Wall clock time and date at job start Tue Mar 31 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 H 1.09007 * 109.47043 * 305.00308 * 3 2 1 5 5 C 1.52998 * 109.47681 * 185.00279 * 3 2 1 6 6 O 1.42900 * 109.47090 * 174.99761 * 5 3 2 7 7 C 1.50699 * 109.46764 * 65.00004 * 3 2 1 8 8 O 1.21280 * 120.00298 * 52.34011 * 7 3 2 9 9 N 1.34785 * 119.99992 * 232.33794 * 7 3 2 10 10 C 1.46500 * 119.99586 * 2.84369 * 9 7 3 11 11 C 1.50704 * 109.46822 * 91.73370 * 10 9 7 12 12 H 1.07994 * 120.00189 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99656 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99889 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00494 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47257 * 89.99804 * 15 13 11 17 17 H 1.48493 * 109.47383 * 210.00132 * 15 13 11 18 18 H 1.48507 * 109.46667 * 329.99741 * 15 13 11 19 19 C 1.39925 * 119.99825 * 182.84843 * 9 7 3 20 20 C 1.38866 * 120.07075 * 352.49736 * 19 9 7 21 21 C 1.38115 * 119.92545 * 179.79381 * 20 19 9 22 22 C 1.38276 * 120.07332 * 0.48973 * 21 20 19 23 23 C 1.50705 * 119.93112 * 179.76966 * 22 21 20 24 24 C 1.38288 * 120.13935 * 359.74022 * 22 21 20 25 25 C 1.38107 * 120.06811 * 0.02635 * 24 22 21 26 26 H 1.09001 * 109.47096 * 299.99416 * 1 2 3 27 27 H 1.09007 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47392 * 60.00094 * 1 2 3 29 29 H 1.09002 * 109.47866 * 120.00417 * 2 1 3 30 30 H 1.09009 * 109.46970 * 240.00289 * 2 1 3 31 31 H 1.09000 * 109.46999 * 295.00231 * 5 3 2 32 32 H 1.08999 * 109.46788 * 54.99733 * 5 3 2 33 33 H 0.96703 * 113.99388 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.46950 * 211.72811 * 10 9 7 35 35 H 1.08994 * 109.47671 * 331.72715 * 10 9 7 36 36 H 0.96992 * 119.99914 * 180.02562 * 14 13 11 37 37 H 1.07998 * 120.03574 * 0.03123 * 20 19 9 38 38 H 1.08006 * 119.96284 * 180.23535 * 21 20 19 39 39 H 1.09001 * 109.46555 * 269.97241 * 23 22 21 40 40 H 1.08997 * 109.47225 * 29.97161 * 23 22 21 41 41 H 1.08997 * 109.46918 * 149.97975 * 23 22 21 42 42 H 1.07993 * 119.96237 * 180.02562 * 24 22 21 43 43 H 1.08008 * 120.03266 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 4.0314 2.7900 -0.2430 7 6 1.6413 2.1162 1.2877 8 8 1.9044 1.5958 2.3511 9 7 0.9924 3.2971 1.2576 10 6 0.6194 3.8954 -0.0266 11 6 -0.7706 3.4510 -0.4029 12 1 -1.3209 2.7889 0.2490 13 6 -1.3396 3.8899 -1.5796 14 7 -2.5525 3.5017 -1.9083 15 14 -0.3876 5.0346 -2.7077 16 1 0.3995 4.2317 -3.6777 17 1 -1.3373 5.9076 -3.4431 18 1 0.5320 5.8745 -1.8988 19 6 0.6750 3.9516 2.4530 20 6 0.8861 3.3180 3.6705 21 6 0.5757 3.9684 4.8487 22 6 0.0459 5.2453 4.8165 23 6 -0.2964 5.9500 6.1038 24 6 -0.1699 5.8771 3.6055 25 6 0.1428 5.2340 2.4240 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 4.0030 0.9836 0.7595 32 1 3.8570 0.8801 -1.0114 33 1 4.9917 2.8673 -0.3270 34 1 0.6430 4.9818 0.0582 35 1 1.3236 3.5756 -0.7946 36 1 -2.9527 3.8101 -2.7362 37 1 1.2960 2.3192 3.6961 38 1 0.7432 3.4776 5.7961 39 1 -1.3274 5.7259 6.3776 40 1 0.3719 5.6081 6.8941 41 1 -0.1815 7.0257 5.9708 42 1 -0.5834 6.8745 3.5837 43 1 -0.0264 5.7279 1.4785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779754793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:23 Heat of formation + Delta-G solvation = -73.829616 kcal Electronic energy + Delta-G solvation = -24445.683804 eV Core-core repulsion = 21069.326351 eV Total energy + Delta-G solvation = -3376.357453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98231 -39.75600 -37.86565 -37.11781 -35.56649 -34.64606 -32.78139 -31.81601 -30.28063 -29.98319 -27.42217 -25.07675 -24.63976 -23.65048 -23.23930 -21.80233 -20.00611 -19.17447 -18.68640 -18.23463 -18.07483 -16.59749 -16.55896 -16.22335 -15.88727 -15.49724 -15.03210 -14.99676 -14.88571 -14.66754 -14.43775 -14.29641 -14.09847 -13.81621 -13.53191 -13.25875 -12.98341 -12.93048 -12.89067 -12.65176 -12.47543 -12.21403 -12.10128 -12.01069 -11.84648 -11.76613 -11.57263 -11.00665 -10.81760 -10.71636 -10.13866 -9.79803 -8.60990 -8.32232 -6.39532 0.38598 0.55369 1.35099 1.37241 1.46513 1.69182 2.06233 2.30200 2.97243 3.00030 3.17248 3.45835 3.99452 4.01288 4.09104 4.10228 4.22355 4.29453 4.36999 4.46294 4.47218 4.50744 4.58738 4.63254 4.72228 4.78303 4.84201 4.89796 4.91848 4.98916 5.03998 5.18235 5.20042 5.23131 5.35410 5.42412 5.46294 5.54100 5.73761 5.80729 6.12808 6.30846 6.51575 6.64992 6.89844 7.14388 7.25595 8.83501 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.007355 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.021060 B = 3806.025120 C = 5118.629078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.120 4.120 4 H 0.096 0.904 5 C 0.094 3.906 6 O -0.594 6.594 7 C 0.531 3.469 8 O -0.561 6.561 9 N -0.533 5.533 10 C 0.212 3.788 11 C -0.531 4.531 12 H 0.032 0.968 13 C 0.030 3.970 14 N -0.934 5.934 15 Si 0.930 3.070 16 H -0.257 1.257 17 H -0.281 1.281 18 H -0.248 1.248 19 C 0.135 3.865 20 C -0.194 4.194 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.101 4.101 24 C -0.102 4.102 25 C -0.166 4.166 26 H 0.016 0.984 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.400 0.600 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.269 0.731 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.145 0.855 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.796 -0.079 5.984 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.141 4.141 4 H 0.114 0.886 5 C 0.016 3.984 6 O -0.403 6.403 7 C 0.323 3.677 8 O -0.443 6.443 9 N -0.251 5.251 10 C 0.091 3.909 11 C -0.569 4.569 12 H 0.050 0.950 13 C -0.170 4.170 14 N -0.573 5.573 15 Si 0.753 3.247 16 H -0.181 1.181 17 H -0.206 1.206 18 H -0.172 1.172 19 C 0.040 3.960 20 C -0.214 4.214 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.157 4.157 24 C -0.120 4.120 25 C -0.187 4.187 26 H 0.035 0.965 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.250 0.750 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.181 0.819 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.181 -0.234 6.342 12.856 hybrid contribution 0.063 0.393 -0.948 1.028 sum 11.244 0.159 5.394 12.472 Atomic orbital electron populations 1.21675 0.96262 1.01556 1.00578 1.21341 0.95259 0.92087 1.04356 1.21674 0.98058 0.99000 0.95396 0.88634 1.22106 0.90247 0.83940 1.02072 1.86508 1.29374 1.27374 1.97011 1.21020 0.75434 0.79466 0.91772 1.90212 1.57264 1.64864 1.31967 1.45648 1.52110 1.20599 1.06760 1.19842 0.95447 0.94838 0.80749 1.21232 0.99431 1.30143 1.06088 0.95010 1.25609 0.95466 0.97172 0.98779 1.70028 1.16156 1.46065 1.25038 0.85969 0.79224 0.79813 0.79717 1.18118 1.20617 1.17189 1.18394 0.98507 0.92946 0.86184 1.22683 1.03892 1.03751 0.91039 1.21251 0.98613 0.94785 0.97787 1.20261 1.00802 0.95226 0.96342 1.20730 1.02162 1.00205 0.92606 1.21072 0.99505 1.00534 0.90937 1.21077 1.03593 0.94150 0.99861 0.96510 0.90725 0.93505 0.90598 0.87438 0.92432 0.88925 0.74994 0.94115 0.92619 0.92138 0.81863 0.83987 0.90815 0.90494 0.90503 0.83727 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 9.73 71.98 0.70 -4.61 16 2 C -0.09 -2.81 5.32 30.59 0.16 -2.65 16 3 C -0.12 -4.20 2.05 -11.54 -0.02 -4.23 16 4 H 0.10 3.73 5.44 -2.38 -0.01 3.72 16 5 C 0.09 2.48 6.41 71.98 0.46 2.94 16 6 O -0.59 -16.56 13.41 -148.98 -2.00 -18.55 16 7 C 0.53 22.61 5.16 87.66 0.45 23.06 16 8 O -0.56 -24.82 13.00 -3.03 -0.04 -24.86 16 9 N -0.53 -24.50 2.68 -635.31 -1.70 -26.20 16 10 C 0.21 10.01 3.48 85.63 0.30 10.31 16 11 C -0.53 -29.16 9.93 25.60 0.25 -28.90 16 12 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 13 C 0.03 1.62 5.47 84.65 0.46 2.08 16 14 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 15 Si 0.93 40.87 27.47 68.60 1.88 42.75 16 16 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 19 C 0.13 6.05 6.49 38.15 0.25 6.30 16 20 C -0.19 -8.08 9.04 22.39 0.20 -7.88 16 21 C -0.11 -3.59 9.69 22.25 0.22 -3.38 16 22 C -0.13 -3.86 5.88 -19.84 -0.12 -3.98 16 23 C -0.10 -2.12 10.01 71.24 0.71 -1.41 16 24 C -0.10 -3.46 9.69 22.25 0.22 -3.25 16 25 C -0.17 -6.90 9.26 22.39 0.21 -6.70 16 26 H 0.02 0.71 7.38 -2.39 -0.02 0.69 16 27 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.08 2.22 7.84 -2.39 -0.02 2.20 16 30 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.40 6.50 9.12 -74.06 -0.68 5.83 16 34 H 0.04 1.91 5.10 -2.39 -0.01 1.90 16 35 H 0.06 2.52 5.27 -2.39 -0.01 2.50 16 36 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.16 7.22 4.56 -59.76 -0.27 6.95 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 41 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 42 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 43 H 0.12 5.05 6.05 -2.91 -0.02 5.04 16 Total: -1.00 -71.47 347.12 2.92 -68.55 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 0.03 Total: 35.73 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 4.45 Total: -22.28 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.40 Total: -81.34 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -2.04 Total: -43.41 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.88 Total: 42.75 kcal Total: -71.47 2.92 -68.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779754793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.280 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds