Wall clock time and date at job start Tue Mar 31 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53004 * 109.47320 * 2 1 4 4 H 1.09005 * 109.46836 * 54.99780 * 3 2 1 5 5 C 1.53000 * 109.47369 * 174.99552 * 3 2 1 6 6 O 1.42897 * 109.47438 * 185.00131 * 5 3 2 7 7 C 1.50699 * 109.47222 * 295.00070 * 3 2 1 8 8 O 1.21291 * 119.99585 * 288.74347 * 7 3 2 9 9 N 1.34777 * 120.00065 * 108.74260 * 7 3 2 10 10 C 1.46498 * 120.00055 * 4.52234 * 9 7 3 11 11 C 1.50696 * 109.46789 * 84.70311 * 10 9 7 12 12 H 1.08005 * 120.00394 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99996 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00096 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00287 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47237 * 59.99382 * 15 13 11 17 17 H 1.48499 * 109.47413 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47056 * 299.99664 * 15 13 11 19 19 C 1.39925 * 119.99740 * 184.52843 * 9 7 3 20 20 C 1.38871 * 120.06838 * 292.05963 * 19 9 7 21 21 C 1.38120 * 119.92796 * 179.72504 * 20 19 9 22 22 C 1.38281 * 120.06776 * 0.57306 * 21 20 19 23 23 C 1.50703 * 119.92728 * 179.70282 * 22 21 20 24 24 C 1.38286 * 120.14322 * 359.67875 * 22 21 20 25 25 C 1.38111 * 120.06843 * 0.04027 * 24 22 21 26 26 H 1.09008 * 109.47087 * 59.99886 * 1 2 3 27 27 H 1.08999 * 109.47735 * 300.00208 * 1 2 3 28 28 H 1.08999 * 109.47589 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47007 * 119.99868 * 2 1 3 30 30 H 1.08999 * 109.47735 * 239.99792 * 2 1 3 31 31 H 1.09001 * 109.47630 * 305.00718 * 5 3 2 32 32 H 1.09004 * 109.46795 * 65.00249 * 5 3 2 33 33 H 0.96694 * 114.00413 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.47314 * 204.70140 * 10 9 7 35 35 H 1.08998 * 109.47172 * 324.70012 * 10 9 7 36 36 H 0.97000 * 120.00168 * 180.02562 * 14 13 11 37 37 H 1.08002 * 120.03650 * 359.97282 * 20 19 9 38 38 H 1.07994 * 119.96271 * 180.24864 * 21 20 19 39 39 H 1.08997 * 109.46731 * 269.97502 * 23 22 21 40 40 H 1.09000 * 109.46927 * 29.97798 * 23 22 21 41 41 H 1.08999 * 109.46710 * 149.97588 * 23 22 21 42 42 H 1.07992 * 119.96402 * 180.02562 * 24 22 21 43 43 H 1.08003 * 120.03306 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 8 4.0315 2.7899 0.2430 7 6 1.6413 2.1163 -1.2877 8 8 2.1799 1.8027 -2.3282 9 7 0.6863 3.0673 -1.2831 10 6 0.1060 3.5165 -0.0151 11 6 0.9803 4.5865 0.5863 12 1 1.8786 4.9002 0.0754 13 6 0.6339 5.1642 1.7893 14 7 -0.4597 4.7818 2.4117 15 14 1.7180 6.4900 2.5352 16 1 1.8103 7.6390 1.5988 17 1 1.1298 6.9455 3.8204 18 1 3.0758 5.9401 2.7791 19 6 0.2490 3.6255 -2.4893 20 6 1.1036 4.4263 -3.2357 21 6 0.6708 4.9711 -4.4288 22 6 -0.6158 4.7296 -4.8745 23 6 -1.0868 5.3312 -6.1734 24 6 -1.4709 3.9369 -4.1310 25 6 -1.0423 3.3845 -2.9400 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.8570 0.8800 1.0114 32 1 4.0029 0.9836 -0.7596 33 1 4.9917 2.8673 0.3263 34 1 -0.8906 3.9199 -0.1943 35 1 0.0384 2.6734 0.6724 36 1 -0.7036 5.1885 3.2579 37 1 2.1068 4.6195 -2.8855 38 1 1.3362 5.5907 -5.0116 39 1 -1.5318 6.3075 -5.9814 40 1 -0.2395 5.4447 -6.8496 41 1 -1.8298 4.6764 -6.6287 42 1 -2.4749 3.7499 -4.4820 43 1 -1.7107 2.7658 -2.3596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779754794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:27 Heat of formation + Delta-G solvation = -71.436958 kcal Electronic energy + Delta-G solvation = -24349.740116 eV Core-core repulsion = 20973.486416 eV Total energy + Delta-G solvation = -3376.253700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.02414 -38.41404 -36.32091 -35.08215 -34.14938 -32.70907 -31.26494 -30.49392 -28.84791 -27.42648 -25.97550 -23.48322 -22.95557 -22.38850 -22.06070 -20.46260 -18.24192 -17.08065 -16.87125 -16.54248 -16.04152 -15.07144 -14.96806 -14.56819 -14.36568 -13.95908 -13.86633 -13.64780 -13.43916 -13.00852 -12.99304 -12.73703 -12.31161 -12.04889 -11.96800 -11.69821 -11.64286 -11.51513 -11.21906 -10.99247 -10.84987 -10.77470 -10.68659 -10.62414 -10.28262 -10.03553 -9.71774 -9.54930 -8.98740 -8.48643 -8.45087 -8.34825 -7.51400 -6.10200 -4.14636 1.76588 1.88949 3.32468 3.35003 3.35964 3.43382 3.87045 4.21386 4.43548 4.53863 5.18376 5.19610 5.21304 5.24304 5.36496 5.43348 5.50109 5.56312 5.61596 5.73430 5.74632 5.85128 5.87556 5.92852 5.94752 6.11834 6.12618 6.17718 6.21248 6.30096 6.48545 6.51271 6.61094 6.70050 6.90950 6.98253 7.03965 7.22705 7.33009 7.74687 7.88776 8.07691 8.12415 8.28011 8.89248 9.06659 9.51819 10.97086 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.006939 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.253613 B = 4034.432856 C = 5210.255283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.116 4.116 4 H 0.123 0.877 5 C 0.096 3.904 6 O -0.554 6.554 7 C 0.544 3.456 8 O -0.566 6.566 9 N -0.559 5.559 10 C 0.239 3.761 11 C -0.523 4.523 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.170 3.830 20 C -0.099 4.099 21 C -0.114 4.114 22 C -0.106 4.106 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.369 0.631 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -5.347 -7.649 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.137 4.137 4 H 0.141 0.859 5 C 0.017 3.983 6 O -0.357 6.357 7 C 0.334 3.666 8 O -0.445 6.445 9 N -0.286 5.286 10 C 0.121 3.879 11 C -0.562 4.562 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.199 1.199 19 C 0.078 3.922 20 C -0.118 4.118 21 C -0.133 4.133 22 C -0.107 4.107 23 C -0.164 4.164 24 C -0.133 4.133 25 C -0.143 4.143 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.215 0.785 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.867 -5.359 -8.018 9.683 hybrid contribution 1.116 0.771 0.793 1.571 sum 1.984 -4.588 -7.226 8.786 Atomic orbital electron populations 1.21819 0.95109 1.01399 1.02861 1.21350 0.96661 0.93952 1.02365 1.21451 0.95991 0.97285 0.98972 0.85921 1.21947 0.93113 0.84061 0.99169 1.86729 1.26073 1.26154 1.96779 1.20234 0.77740 0.78611 0.90039 1.90589 1.54111 1.65639 1.34180 1.45936 1.38861 1.37045 1.06737 1.19598 0.94483 0.95723 0.78121 1.21436 1.08934 1.20405 1.05439 0.91718 1.24888 0.95193 0.97023 0.96671 1.69916 1.23898 1.42992 1.16846 0.86544 0.80855 0.81879 0.78133 1.20311 1.21399 1.19921 1.17611 0.92820 0.94372 0.87355 1.21261 1.00103 0.95676 0.94803 1.20816 0.95513 1.00621 0.96325 1.19785 0.94315 0.99377 0.97183 1.20707 1.01128 1.00405 0.94130 1.20742 0.99057 0.98612 0.94877 1.21179 0.95887 1.00831 0.96397 0.92730 0.91592 0.92709 0.91074 0.91560 0.93518 0.93401 0.78527 0.94511 0.93901 0.92644 0.86176 0.86451 0.91613 0.92001 0.92004 0.86353 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.30 37.15 0.35 -2.01 16 2 C -0.11 -1.62 5.39 -26.73 -0.14 -1.76 16 3 C -0.12 -2.20 2.01 -91.77 -0.18 -2.38 16 4 H 0.12 2.63 5.40 -51.93 -0.28 2.35 16 5 C 0.10 1.61 6.32 37.16 0.23 1.85 16 6 O -0.55 -10.35 13.41 -35.23 -0.47 -10.82 16 7 C 0.54 11.89 5.09 -10.99 -0.06 11.83 16 8 O -0.57 -13.39 16.11 5.55 0.09 -13.30 16 9 N -0.56 -12.55 2.52 -114.74 -0.29 -12.84 16 10 C 0.24 5.86 4.73 -5.20 -0.02 5.83 16 11 C -0.52 -14.16 9.02 -34.44 -0.31 -14.47 16 12 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -25.12 13.29 55.43 0.74 -24.38 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.17 3.63 4.80 -83.69 -0.40 3.22 16 20 C -0.10 -2.02 9.37 -39.39 -0.37 -2.39 16 21 C -0.11 -1.94 9.69 -39.61 -0.38 -2.32 16 22 C -0.11 -1.64 5.88 -104.59 -0.62 -2.26 16 23 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 24 C -0.11 -1.83 9.69 -39.61 -0.38 -2.21 16 25 C -0.12 -2.31 9.69 -39.39 -0.38 -2.69 16 26 H 0.05 0.92 7.38 -51.92 -0.38 0.53 16 27 H 0.07 1.05 7.54 -51.93 -0.39 0.66 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 33 H 0.37 4.83 9.12 45.56 0.42 5.24 16 34 H 0.04 0.96 7.83 -51.93 -0.41 0.55 16 35 H 0.04 1.05 5.20 -51.93 -0.27 0.78 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 38 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 41 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -32.19 358.14 -7.88 -40.07 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.91 Total: 8.40 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.41 Total: -8.96 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.45 Total: -37.22 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.38 Total: -24.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.19 -7.88 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779754794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.367 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds