Wall clock time and date at job start Tue Mar 31 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53004 * 109.47320 * 2 1 4 4 H 1.09005 * 109.46836 * 54.99780 * 3 2 1 5 5 C 1.53000 * 109.47369 * 174.99552 * 3 2 1 6 6 O 1.42897 * 109.47438 * 185.00131 * 5 3 2 7 7 C 1.50699 * 109.47222 * 295.00070 * 3 2 1 8 8 O 1.21291 * 119.99585 * 288.74347 * 7 3 2 9 9 N 1.34777 * 120.00065 * 108.74260 * 7 3 2 10 10 C 1.46498 * 120.00055 * 4.52234 * 9 7 3 11 11 C 1.50696 * 109.46789 * 84.70311 * 10 9 7 12 12 H 1.08005 * 120.00394 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99996 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00096 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00287 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47237 * 59.99382 * 15 13 11 17 17 H 1.48499 * 109.47413 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47056 * 299.99664 * 15 13 11 19 19 C 1.39925 * 119.99740 * 184.52843 * 9 7 3 20 20 C 1.38871 * 120.06838 * 292.05963 * 19 9 7 21 21 C 1.38120 * 119.92796 * 179.72504 * 20 19 9 22 22 C 1.38281 * 120.06776 * 0.57306 * 21 20 19 23 23 C 1.50703 * 119.92728 * 179.70282 * 22 21 20 24 24 C 1.38286 * 120.14322 * 359.67875 * 22 21 20 25 25 C 1.38111 * 120.06843 * 0.04027 * 24 22 21 26 26 H 1.09008 * 109.47087 * 59.99886 * 1 2 3 27 27 H 1.08999 * 109.47735 * 300.00208 * 1 2 3 28 28 H 1.08999 * 109.47589 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47007 * 119.99868 * 2 1 3 30 30 H 1.08999 * 109.47735 * 239.99792 * 2 1 3 31 31 H 1.09001 * 109.47630 * 305.00718 * 5 3 2 32 32 H 1.09004 * 109.46795 * 65.00249 * 5 3 2 33 33 H 0.96694 * 114.00413 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.47314 * 204.70140 * 10 9 7 35 35 H 1.08998 * 109.47172 * 324.70012 * 10 9 7 36 36 H 0.97000 * 120.00168 * 180.02562 * 14 13 11 37 37 H 1.08002 * 120.03650 * 359.97282 * 20 19 9 38 38 H 1.07994 * 119.96271 * 180.24864 * 21 20 19 39 39 H 1.08997 * 109.46731 * 269.97502 * 23 22 21 40 40 H 1.09000 * 109.46927 * 29.97798 * 23 22 21 41 41 H 1.08999 * 109.46710 * 149.97588 * 23 22 21 42 42 H 1.07992 * 119.96402 * 180.02562 * 24 22 21 43 43 H 1.08003 * 120.03306 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 8 4.0315 2.7899 0.2430 7 6 1.6413 2.1163 -1.2877 8 8 2.1799 1.8027 -2.3282 9 7 0.6863 3.0673 -1.2831 10 6 0.1060 3.5165 -0.0151 11 6 0.9803 4.5865 0.5863 12 1 1.8786 4.9002 0.0754 13 6 0.6339 5.1642 1.7893 14 7 -0.4597 4.7818 2.4117 15 14 1.7180 6.4900 2.5352 16 1 1.8103 7.6390 1.5988 17 1 1.1298 6.9455 3.8204 18 1 3.0758 5.9401 2.7791 19 6 0.2490 3.6255 -2.4893 20 6 1.1036 4.4263 -3.2357 21 6 0.6708 4.9711 -4.4288 22 6 -0.6158 4.7296 -4.8745 23 6 -1.0868 5.3312 -6.1734 24 6 -1.4709 3.9369 -4.1310 25 6 -1.0423 3.3845 -2.9400 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.8570 0.8800 1.0114 32 1 4.0029 0.9836 -0.7596 33 1 4.9917 2.8673 0.3263 34 1 -0.8906 3.9199 -0.1943 35 1 0.0384 2.6734 0.6724 36 1 -0.7036 5.1885 3.2579 37 1 2.1068 4.6195 -2.8855 38 1 1.3362 5.5907 -5.0116 39 1 -1.5318 6.3075 -5.9814 40 1 -0.2395 5.4447 -6.8496 41 1 -1.8298 4.6764 -6.6287 42 1 -2.4749 3.7499 -4.4820 43 1 -1.7107 2.7658 -2.3596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779754794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:26 Heat of formation + Delta-G solvation = -91.915017 kcal Electronic energy + Delta-G solvation = -24350.628111 eV Core-core repulsion = 20973.486416 eV Total energy + Delta-G solvation = -3377.141695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.63164 -39.83738 -37.75777 -36.83933 -35.52136 -34.68152 -32.67955 -31.89574 -30.19244 -29.30992 -27.34588 -25.20948 -24.53004 -23.72558 -23.54810 -21.84537 -19.82903 -18.68496 -18.61734 -18.20918 -17.79401 -16.62586 -16.43900 -16.31376 -15.84926 -15.40963 -15.31602 -14.95730 -14.58415 -14.48460 -14.37758 -14.25121 -14.11070 -13.64622 -13.46293 -13.09816 -12.97576 -12.93427 -12.78324 -12.69716 -12.46446 -12.18180 -12.11632 -12.07459 -11.95014 -11.71132 -11.59114 -10.95421 -10.72538 -10.50673 -9.97581 -9.87312 -9.11322 -8.19883 -6.31975 0.34901 0.47070 1.39069 1.40612 1.48626 1.72459 2.23821 2.43334 2.80222 3.10094 3.26492 3.71046 3.93390 4.02556 4.04570 4.07651 4.22525 4.28896 4.43167 4.45958 4.49219 4.52750 4.58138 4.62085 4.82541 4.84060 4.91412 4.93200 4.95151 5.01258 5.08395 5.13752 5.19199 5.21943 5.36512 5.39946 5.58177 5.66321 5.71072 5.84701 6.05190 6.18403 6.50209 6.79327 6.95498 7.30458 7.41037 8.85662 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.006939 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.253613 B = 4034.432856 C = 5210.255283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.118 4.118 4 H 0.094 0.906 5 C 0.095 3.905 6 O -0.588 6.588 7 C 0.538 3.462 8 O -0.591 6.591 9 N -0.561 5.561 10 C 0.259 3.741 11 C -0.532 4.532 12 H 0.043 0.957 13 C 0.024 3.976 14 N -0.920 5.920 15 Si 0.954 3.046 16 H -0.279 1.279 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.125 3.875 20 C -0.126 4.126 21 C -0.115 4.115 22 C -0.098 4.098 23 C -0.104 4.104 24 C -0.109 4.109 25 C -0.137 4.137 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.391 0.609 34 H 0.015 0.985 35 H 0.041 0.959 36 H 0.268 0.732 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.156 0.844 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.085 -5.430 -8.609 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.139 4.139 4 H 0.112 0.888 5 C 0.017 3.983 6 O -0.395 6.395 7 C 0.330 3.670 8 O -0.472 6.472 9 N -0.287 5.287 10 C 0.140 3.860 11 C -0.571 4.571 12 H 0.062 0.938 13 C -0.176 4.176 14 N -0.560 5.560 15 Si 0.780 3.220 16 H -0.204 1.204 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.034 3.966 20 C -0.146 4.146 21 C -0.134 4.134 22 C -0.098 4.098 23 C -0.160 4.160 24 C -0.127 4.127 25 C -0.157 4.157 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.240 0.760 34 H 0.033 0.967 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.162 0.838 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.173 0.827 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.605 -5.441 -8.984 10.521 hybrid contribution 1.167 0.823 0.987 1.736 sum 1.772 -4.618 -7.997 9.403 Atomic orbital electron populations 1.21796 0.95280 1.02797 1.01010 1.21395 0.96478 0.91714 1.04113 1.21577 0.97644 0.98818 0.95887 0.88799 1.22066 0.91485 0.83725 1.00985 1.86673 1.28359 1.27559 1.96932 1.20808 0.77103 0.78240 0.90871 1.90547 1.54912 1.66475 1.35316 1.45865 1.38984 1.37248 1.06561 1.19183 0.92942 0.94850 0.79059 1.21493 1.08521 1.21274 1.05782 0.93821 1.25554 0.96336 0.98803 0.96915 1.69992 1.24912 1.43888 1.17190 0.85667 0.79412 0.79328 0.77621 1.20420 1.20178 1.19546 1.18022 0.94460 0.96343 0.87750 1.21251 0.99191 0.97375 0.96756 1.21149 0.96912 1.00192 0.95132 1.20322 0.93219 0.97824 0.98425 1.20795 1.02306 1.01119 0.91826 1.21197 1.00733 0.97341 0.93469 1.21357 0.94934 1.01554 0.97807 0.95176 0.92823 0.89609 0.87740 0.91154 0.89845 0.93058 0.76047 0.96712 0.94153 0.92313 0.88754 0.83830 0.90150 0.90540 0.89954 0.82677 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.30 71.98 0.67 -3.93 16 2 C -0.10 -2.97 5.39 30.59 0.16 -2.80 16 3 C -0.12 -4.56 2.01 -11.54 -0.02 -4.59 16 4 H 0.09 4.18 5.40 -2.38 -0.01 4.16 16 5 C 0.10 3.18 6.32 71.98 0.45 3.63 16 6 O -0.59 -22.30 13.41 -148.98 -2.00 -24.30 16 7 C 0.54 24.60 5.09 87.66 0.45 25.05 16 8 O -0.59 -29.12 16.11 -3.06 -0.05 -29.17 16 9 N -0.56 -26.63 2.52 -635.32 -1.60 -28.24 16 10 C 0.26 13.40 4.73 85.63 0.40 13.80 16 11 C -0.53 -29.98 9.02 25.60 0.23 -29.75 16 12 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 13 C 0.02 1.32 5.46 84.65 0.46 1.78 16 14 N -0.92 -52.33 13.29 21.45 0.28 -52.04 16 15 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 C 0.12 5.60 4.80 38.15 0.18 5.78 16 20 C -0.13 -5.38 9.37 22.39 0.21 -5.17 16 21 C -0.12 -3.86 9.69 22.25 0.22 -3.64 16 22 C -0.10 -2.80 5.88 -19.84 -0.12 -2.92 16 23 C -0.10 -1.95 10.01 71.24 0.71 -1.24 16 24 C -0.11 -3.31 9.69 22.25 0.22 -3.10 16 25 C -0.14 -5.24 9.69 22.39 0.22 -5.02 16 26 H 0.03 1.03 7.38 -2.38 -0.02 1.02 16 27 H 0.05 1.74 7.54 -2.39 -0.02 1.72 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.67 7.79 -2.38 -0.02 1.65 16 33 H 0.39 10.19 9.12 -74.06 -0.68 9.51 16 34 H 0.01 0.82 7.83 -2.39 -0.02 0.80 16 35 H 0.04 2.10 5.20 -2.39 -0.01 2.08 16 36 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 41 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 42 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 43 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -72.62 358.14 3.44 -69.18 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.32 Total: 30.16 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 4.45 Total: -12.11 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -1.32 Total: -80.28 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -2.05 Total: -53.46 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.62 3.44 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779754794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.735 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds