Wall clock time and date at job start Tue Mar 31 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 H 1.09000 * 109.47255 * 306.49972 * 3 2 1 5 5 C 1.53003 * 109.47022 * 66.49567 * 3 2 1 6 6 O 1.42901 * 109.46965 * 293.57299 * 5 3 2 7 7 C 1.50697 * 109.47230 * 186.49621 * 3 2 1 8 8 O 1.21277 * 120.00102 * 240.00096 * 7 3 2 9 9 N 1.34775 * 119.99917 * 59.99998 * 7 3 2 10 10 C 1.46501 * 120.00171 * 179.97438 * 9 7 3 11 11 H 1.09001 * 109.47111 * 325.00781 * 10 9 7 12 12 C 1.52990 * 109.47462 * 205.00149 * 10 9 7 13 13 C 1.50705 * 109.47403 * 65.00095 * 12 10 9 14 14 H 1.08001 * 119.99454 * 0.02562 * 13 12 10 15 15 C 1.37866 * 120.00214 * 179.97438 * 13 12 10 16 16 N 1.31510 * 120.00361 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46945 * 60.00072 * 17 15 13 19 19 H 1.48498 * 109.47340 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47164 * 300.00492 * 17 15 13 21 21 C 1.50706 * 109.46762 * 84.99873 * 10 9 7 22 22 C 1.38234 * 120.00176 * 220.00102 * 21 10 9 23 23 C 1.38233 * 120.00092 * 180.02562 * 22 21 10 24 24 C 1.38229 * 119.99979 * 359.95363 * 23 22 21 25 25 C 1.38237 * 120.00155 * 0.02562 * 24 23 22 26 26 C 1.38233 * 119.99941 * 0.06534 * 25 24 23 27 27 H 1.09006 * 109.47016 * 171.71777 * 1 2 3 28 28 H 1.09002 * 109.47340 * 291.71560 * 1 2 3 29 29 H 1.09001 * 109.47170 * 51.71872 * 1 2 3 30 30 H 1.09001 * 109.47331 * 240.00222 * 2 1 3 31 31 H 1.08997 * 109.46952 * 119.99729 * 2 1 3 32 32 H 1.09001 * 109.47137 * 53.57559 * 5 3 2 33 33 H 1.09001 * 109.47211 * 173.57602 * 5 3 2 34 34 H 0.96707 * 113.99367 * 179.97438 * 6 5 3 35 35 H 0.96999 * 119.99946 * 0.02562 * 9 7 3 36 36 H 1.09007 * 109.47290 * 185.00141 * 12 10 9 37 37 H 1.09003 * 109.47317 * 305.00265 * 12 10 9 38 38 H 0.97001 * 120.00324 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99691 * 359.97438 * 22 21 10 40 40 H 1.08002 * 119.99755 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00510 * 179.72768 * 24 23 22 42 42 H 1.07999 * 120.00434 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00234 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5848 1.9888 -0.8261 5 6 1.6676 2.1151 1.3229 6 8 0.2471 2.2469 1.4069 7 6 3.5384 1.4456 -0.1607 8 8 4.2394 1.9373 0.6981 9 7 4.0994 0.9019 -1.2590 10 6 5.5560 0.9054 -1.4156 11 1 5.9652 1.8206 -0.9878 12 6 5.9093 0.8349 -2.9024 13 6 5.4313 2.0865 -3.5923 14 1 4.9263 2.8556 -3.0266 15 6 5.6394 2.2503 -4.9453 16 7 6.2547 1.3141 -5.6341 17 14 5.0462 3.8015 -5.8006 18 1 5.7035 4.9853 -5.1906 19 1 5.3893 3.7331 -7.2438 20 1 3.5738 3.9191 -5.6473 21 6 6.1406 -0.2871 -0.7031 22 6 7.3181 -0.1578 0.0093 23 6 7.8546 -1.2517 0.6623 24 6 7.2130 -2.4746 0.6037 25 6 6.0352 -2.6039 -0.1084 26 6 5.4997 -1.5105 -0.7629 27 1 -0.3633 -1.0170 -0.1480 28 1 -0.3634 0.3802 0.9547 29 1 -0.3633 0.6367 -0.8067 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0258 1.5067 2.1533 33 1 2.1274 3.1022 1.3707 34 1 -0.0614 2.6659 2.2220 35 1 3.5387 0.5090 -1.9461 36 1 6.9900 0.7479 -3.0154 37 1 5.4262 -0.0337 -3.3499 38 1 6.4009 1.4292 -6.5861 39 1 7.8194 0.7978 0.0549 40 1 8.7749 -1.1507 1.2185 41 1 7.6344 -3.3304 1.1102 42 1 5.5342 -3.5595 -0.1545 43 1 4.5798 -1.6115 -1.3196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779815317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:36 Heat of formation + Delta-G solvation = -84.973442 kcal Electronic energy + Delta-G solvation = -23692.299475 eV Core-core repulsion = 20315.458789 eV Total energy + Delta-G solvation = -3376.840686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90540 -38.67538 -37.06903 -35.19142 -34.14810 -32.70502 -31.03034 -30.45925 -29.14013 -28.67088 -25.18708 -23.91293 -22.34027 -22.02256 -21.74092 -19.96259 -19.47907 -17.85382 -16.88361 -16.25006 -16.13080 -15.74527 -15.37901 -14.87448 -14.55952 -14.29264 -14.05466 -13.91228 -13.22554 -13.04955 -12.93844 -12.77404 -12.53336 -12.42577 -12.11309 -11.82679 -11.76379 -11.55470 -11.14553 -10.94533 -10.93561 -10.72836 -10.63490 -10.50900 -10.45909 -9.79036 -9.76462 -9.38131 -9.25690 -8.55549 -8.46815 -8.42797 -8.18950 -6.10034 -4.13818 1.77259 1.79713 3.07857 3.28127 3.33236 3.36083 3.54736 4.20289 4.38682 4.46041 4.85868 4.88681 5.14404 5.25826 5.26500 5.26589 5.36149 5.46874 5.49232 5.54430 5.62262 5.67143 5.87953 5.90438 5.93343 6.02511 6.07614 6.17137 6.26660 6.35224 6.43293 6.50283 6.57100 6.84111 6.84626 6.90171 7.10400 7.39807 7.47811 7.56345 7.61022 7.86245 8.10530 8.24656 8.73109 8.91699 9.51361 11.00400 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.006662 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.726266 B = 4201.635885 C = 6446.341106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.110 4.110 4 H 0.104 0.896 5 C 0.098 3.902 6 O -0.568 6.568 7 C 0.519 3.481 8 O -0.554 6.554 9 N -0.696 5.696 10 C 0.184 3.816 11 H 0.087 0.913 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.071 4.071 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.107 4.107 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.375 0.625 35 H 0.402 0.598 36 H 0.034 0.966 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -5.034 12.537 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.131 4.131 4 H 0.122 0.878 5 C 0.020 3.980 6 O -0.374 6.374 7 C 0.304 3.696 8 O -0.432 6.432 9 N -0.345 5.345 10 C 0.079 3.921 11 H 0.105 0.895 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.072 4.072 22 C -0.127 4.127 23 C -0.141 4.141 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.126 4.126 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.221 0.779 35 H 0.237 0.763 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.492 -5.016 12.348 14.825 hybrid contribution -0.427 0.896 -0.488 1.106 sum -6.919 -4.120 11.860 14.335 Atomic orbital electron populations 1.21842 0.94532 1.00451 1.03625 1.21453 0.97176 0.93738 1.02332 1.21306 0.93087 0.98864 0.99844 0.87815 1.21832 0.80496 0.99690 0.96023 1.86511 1.21961 1.83785 1.45116 1.20242 0.89451 0.77828 0.82054 1.90654 1.64194 1.46437 1.41946 1.45949 1.08283 1.59096 1.21139 1.20257 0.78470 0.94363 0.98965 0.89540 1.19386 0.98069 0.97919 0.85939 1.21092 1.38104 1.03491 0.93313 0.92465 1.24979 0.95092 0.96440 0.97566 1.69945 1.41684 1.33360 1.08042 0.86657 0.79255 0.83671 0.78437 1.20215 1.21279 1.20222 1.20550 0.94935 0.95872 0.95854 1.21017 0.95943 0.98764 0.96961 1.21037 0.99768 0.93155 1.00122 1.20992 0.96314 0.97307 1.00702 1.21041 0.96511 0.98309 0.98440 1.20904 0.99978 0.92365 0.99322 0.93638 0.90605 0.92814 0.91584 0.91841 0.93148 0.92755 0.77862 0.76350 0.94756 0.95721 0.92789 0.86211 0.86623 0.86854 0.86736 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.03 37.16 0.34 -1.29 16 2 C -0.11 -1.33 5.35 -26.73 -0.14 -1.47 16 3 C -0.11 -1.53 2.54 -91.77 -0.23 -1.76 16 4 H 0.10 1.45 8.11 -51.93 -0.42 1.03 16 5 C 0.10 1.24 5.77 37.16 0.21 1.46 16 6 O -0.57 -6.07 10.50 -35.23 -0.37 -6.44 16 7 C 0.52 9.08 7.11 -10.99 -0.08 9.01 16 8 O -0.55 -11.40 15.55 5.56 0.09 -11.31 16 9 N -0.70 -12.48 3.88 -54.94 -0.21 -12.70 16 10 C 0.18 3.73 2.11 -69.08 -0.15 3.58 16 11 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 12 C 0.02 0.58 4.49 -27.89 -0.13 0.45 16 13 C -0.52 -13.78 8.84 -34.44 -0.30 -14.09 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.67 5.46 -17.83 -0.10 1.57 16 16 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 17 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.07 -1.31 4.91 -104.62 -0.51 -1.83 16 22 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 16 23 C -0.12 -1.85 10.05 -39.59 -0.40 -2.24 16 24 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 16 25 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 26 C -0.11 -1.80 9.32 -39.58 -0.37 -2.17 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.84 5.91 -51.93 -0.31 0.54 16 29 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.07 0.78 7.39 -51.93 -0.38 0.39 16 31 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 34 H 0.37 2.36 9.12 45.56 0.42 2.78 16 35 H 0.40 6.69 7.95 -40.82 -0.32 6.37 16 36 H 0.03 0.90 8.14 -51.92 -0.42 0.47 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 43 H 0.12 1.81 7.72 -52.49 -0.41 1.41 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -31.28 357.42 -8.42 -39.70 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.99 Total: 9.73 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -3.04 Total: -15.60 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.52 Total: -37.49 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.28 Total: -17.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.28 -8.42 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779815317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.274 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds