Wall clock time and date at job start Tue Mar 31 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 H 1.09000 * 109.47255 * 306.49972 * 3 2 1 5 5 C 1.53003 * 109.47022 * 66.49567 * 3 2 1 6 6 O 1.42901 * 109.46965 * 293.57299 * 5 3 2 7 7 C 1.50697 * 109.47230 * 186.49621 * 3 2 1 8 8 O 1.21277 * 120.00102 * 240.00096 * 7 3 2 9 9 N 1.34775 * 119.99917 * 59.99998 * 7 3 2 10 10 C 1.46501 * 120.00171 * 179.97438 * 9 7 3 11 11 H 1.09001 * 109.47111 * 325.00781 * 10 9 7 12 12 C 1.52990 * 109.47462 * 205.00149 * 10 9 7 13 13 C 1.50705 * 109.47403 * 65.00095 * 12 10 9 14 14 H 1.08001 * 119.99454 * 0.02562 * 13 12 10 15 15 C 1.37866 * 120.00214 * 179.97438 * 13 12 10 16 16 N 1.31510 * 120.00361 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46945 * 60.00072 * 17 15 13 19 19 H 1.48498 * 109.47340 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47164 * 300.00492 * 17 15 13 21 21 C 1.50706 * 109.46762 * 84.99873 * 10 9 7 22 22 C 1.38234 * 120.00176 * 220.00102 * 21 10 9 23 23 C 1.38233 * 120.00092 * 180.02562 * 22 21 10 24 24 C 1.38229 * 119.99979 * 359.95363 * 23 22 21 25 25 C 1.38237 * 120.00155 * 0.02562 * 24 23 22 26 26 C 1.38233 * 119.99941 * 0.06534 * 25 24 23 27 27 H 1.09006 * 109.47016 * 171.71777 * 1 2 3 28 28 H 1.09002 * 109.47340 * 291.71560 * 1 2 3 29 29 H 1.09001 * 109.47170 * 51.71872 * 1 2 3 30 30 H 1.09001 * 109.47331 * 240.00222 * 2 1 3 31 31 H 1.08997 * 109.46952 * 119.99729 * 2 1 3 32 32 H 1.09001 * 109.47137 * 53.57559 * 5 3 2 33 33 H 1.09001 * 109.47211 * 173.57602 * 5 3 2 34 34 H 0.96707 * 113.99367 * 179.97438 * 6 5 3 35 35 H 0.96999 * 119.99946 * 0.02562 * 9 7 3 36 36 H 1.09007 * 109.47290 * 185.00141 * 12 10 9 37 37 H 1.09003 * 109.47317 * 305.00265 * 12 10 9 38 38 H 0.97001 * 120.00324 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99691 * 359.97438 * 22 21 10 40 40 H 1.08002 * 119.99755 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00510 * 179.72768 * 24 23 22 42 42 H 1.07999 * 120.00434 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00234 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5848 1.9888 -0.8261 5 6 1.6676 2.1151 1.3229 6 8 0.2471 2.2469 1.4069 7 6 3.5384 1.4456 -0.1607 8 8 4.2394 1.9373 0.6981 9 7 4.0994 0.9019 -1.2590 10 6 5.5560 0.9054 -1.4156 11 1 5.9652 1.8206 -0.9878 12 6 5.9093 0.8349 -2.9024 13 6 5.4313 2.0865 -3.5923 14 1 4.9263 2.8556 -3.0266 15 6 5.6394 2.2503 -4.9453 16 7 6.2547 1.3141 -5.6341 17 14 5.0462 3.8015 -5.8006 18 1 5.7035 4.9853 -5.1906 19 1 5.3893 3.7331 -7.2438 20 1 3.5738 3.9191 -5.6473 21 6 6.1406 -0.2871 -0.7031 22 6 7.3181 -0.1578 0.0093 23 6 7.8546 -1.2517 0.6623 24 6 7.2130 -2.4746 0.6037 25 6 6.0352 -2.6039 -0.1084 26 6 5.4997 -1.5105 -0.7629 27 1 -0.3633 -1.0170 -0.1480 28 1 -0.3634 0.3802 0.9547 29 1 -0.3633 0.6367 -0.8067 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0258 1.5067 2.1533 33 1 2.1274 3.1022 1.3707 34 1 -0.0614 2.6659 2.2220 35 1 3.5387 0.5090 -1.9461 36 1 6.9900 0.7479 -3.0154 37 1 5.4262 -0.0337 -3.3499 38 1 6.4009 1.4292 -6.5861 39 1 7.8194 0.7978 0.0549 40 1 8.7749 -1.1507 1.2185 41 1 7.6344 -3.3304 1.1102 42 1 5.5342 -3.5595 -0.1545 43 1 4.5798 -1.6115 -1.3196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779815317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:35 Heat of formation + Delta-G solvation = -104.786316 kcal Electronic energy + Delta-G solvation = -23693.158626 eV Core-core repulsion = 20315.458789 eV Total energy + Delta-G solvation = -3377.699836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30686 -39.92860 -38.11895 -36.78171 -35.22247 -34.65967 -32.41861 -31.69153 -30.57548 -30.01293 -26.88071 -25.09664 -23.79734 -23.45797 -22.90010 -21.39674 -20.81313 -18.99624 -18.60520 -17.71203 -17.44209 -16.98985 -16.72838 -16.39747 -16.18375 -15.47877 -15.32388 -15.12247 -14.67929 -14.40147 -14.18504 -14.10451 -13.87039 -13.66457 -13.47849 -13.42787 -12.96658 -12.84997 -12.76035 -12.64908 -12.45222 -12.15351 -11.92094 -11.86193 -11.61257 -11.48075 -11.35614 -10.78699 -10.69361 -10.56554 -9.99558 -9.75479 -9.52231 -8.21336 -6.31827 0.50952 0.56046 1.39455 1.40621 1.48688 1.67198 2.21911 2.38879 2.96595 3.12507 3.43058 3.67719 3.83106 3.99498 4.03016 4.13107 4.21037 4.32302 4.37012 4.47412 4.50003 4.61938 4.65243 4.68900 4.75775 4.79047 4.88808 5.04034 5.12424 5.17440 5.20392 5.26889 5.33209 5.41646 5.60057 5.61176 5.62873 5.64355 5.76542 5.89771 6.15100 6.19865 6.65248 6.80516 6.90716 7.30145 7.37322 8.89106 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.006662 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.726266 B = 4201.635885 C = 6446.341106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.104 4.104 4 H 0.106 0.894 5 C 0.107 3.893 6 O -0.569 6.569 7 C 0.517 3.483 8 O -0.587 6.587 9 N -0.693 5.693 10 C 0.200 3.800 11 H 0.057 0.943 12 C 0.038 3.962 13 C -0.532 4.532 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.120 4.120 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.396 0.604 35 H 0.408 0.592 36 H 0.003 0.997 37 H 0.012 0.988 38 H 0.264 0.736 39 H 0.111 0.889 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -6.170 13.486 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.125 4.125 4 H 0.124 0.876 5 C 0.028 3.972 6 O -0.378 6.378 7 C 0.305 3.695 8 O -0.468 6.468 9 N -0.342 5.342 10 C 0.094 3.906 11 H 0.076 0.924 12 C 0.001 3.999 13 C -0.570 4.570 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.099 4.099 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.138 4.138 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.246 0.754 35 H 0.244 0.756 36 H 0.022 0.978 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.784 -6.148 13.312 16.602 hybrid contribution -0.003 1.211 -0.723 1.410 sum -7.787 -4.938 12.589 15.605 Atomic orbital electron populations 1.21784 0.93256 1.01253 1.03519 1.21447 0.98121 0.92188 1.02495 1.21295 0.89933 1.00543 1.00734 0.87628 1.21598 0.81621 0.98762 0.95173 1.86459 1.20338 1.84135 1.46829 1.20872 0.90973 0.76607 0.81080 1.90631 1.65409 1.47778 1.42996 1.45858 1.07341 1.59264 1.21692 1.19733 0.79984 0.94451 0.96383 0.92439 1.19125 0.95780 0.96521 0.88489 1.21369 1.37789 1.04117 0.93697 0.92879 1.25767 0.95208 0.99400 0.98325 1.70058 1.42851 1.35225 1.08334 0.85656 0.79198 0.79800 0.77327 1.20083 1.20783 1.19077 1.20437 0.96124 0.95863 0.97525 1.21170 0.96125 0.99707 0.98209 1.21379 1.00629 0.92720 0.99409 1.21469 0.95626 0.97955 0.99608 1.21440 0.96688 0.98797 0.97242 1.21061 1.00355 0.92392 1.00021 0.92262 0.90476 0.93241 0.91338 0.91806 0.93116 0.94098 0.75419 0.75644 0.97844 0.96934 0.92685 0.87042 0.83890 0.83106 0.83549 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.03 71.98 0.65 -2.16 16 2 C -0.10 -2.39 5.35 30.59 0.16 -2.23 16 3 C -0.10 -2.84 2.54 -11.54 -0.03 -2.87 16 4 H 0.11 2.87 8.11 -2.39 -0.02 2.85 16 5 C 0.11 2.63 5.77 71.98 0.42 3.05 16 6 O -0.57 -11.04 10.50 -148.98 -1.56 -12.61 16 7 C 0.52 18.46 7.11 87.66 0.62 19.08 16 8 O -0.59 -24.93 15.55 -3.02 -0.05 -24.98 16 9 N -0.69 -25.62 3.88 -446.11 -1.73 -27.35 16 10 C 0.20 8.53 2.11 44.24 0.09 8.63 16 11 H 0.06 2.75 7.44 -2.39 -0.02 2.73 16 12 C 0.04 1.93 4.49 29.85 0.13 2.06 16 13 C -0.53 -28.97 8.84 25.60 0.23 -28.74 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 15 C 0.01 0.66 5.46 84.65 0.46 1.12 16 16 N -0.92 -54.06 13.29 21.44 0.28 -53.78 16 17 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 C -0.10 -3.76 4.91 -19.86 -0.10 -3.85 16 22 C -0.13 -4.77 9.67 22.27 0.22 -4.55 16 23 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 24 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 25 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 26 C -0.12 -3.97 9.32 22.27 0.21 -3.76 16 27 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.08 1.52 5.91 -2.39 -0.01 1.51 16 29 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 30 H 0.07 1.52 7.39 -2.39 -0.02 1.51 16 31 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 32 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 33 H 0.04 1.11 7.90 -2.39 -0.02 1.09 16 34 H 0.40 4.08 9.12 -74.05 -0.68 3.41 16 35 H 0.41 13.90 7.95 -92.71 -0.74 13.16 16 36 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 37 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.26 14.65 8.31 -92.71 -0.77 13.87 16 39 H 0.11 3.99 8.04 -2.91 -0.02 3.97 16 40 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 42 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 43 H 0.12 3.74 7.72 -2.91 -0.02 3.72 16 Total: -1.00 -68.69 357.42 2.30 -66.40 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.40 Total: 30.49 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 3.73 Total: -23.69 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.45 Total: -81.13 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.61 Total: -37.59 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.69 2.30 -66.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779815317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.390 kcal (2) G-P(sol) polarization free energy of solvation -68.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds