Wall clock time and date at job start Tue Mar 31 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47085 * 2 1 4 4 H 1.09004 * 109.46881 * 304.99377 * 3 2 1 5 5 C 1.52997 * 109.47504 * 64.99737 * 3 2 1 6 6 O 1.42898 * 109.47319 * 185.00258 * 5 3 2 7 7 C 1.50705 * 109.47056 * 185.00259 * 3 2 1 8 8 O 1.21281 * 119.99661 * 359.97438 * 7 3 2 9 9 N 1.34780 * 119.99956 * 180.02562 * 7 3 2 10 10 C 1.46493 * 119.99866 * 179.97438 * 9 7 3 11 11 H 1.09008 * 109.47314 * 35.00005 * 10 9 7 12 12 C 1.52999 * 109.46952 * 154.99666 * 10 9 7 13 13 C 1.50703 * 109.47395 * 294.99901 * 12 10 9 14 14 H 1.08004 * 119.99565 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99872 * 179.97438 * 13 12 10 16 16 N 1.31523 * 119.99567 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00445 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47184 * 89.99787 * 17 15 13 19 19 H 1.48499 * 109.47381 * 210.00201 * 17 15 13 20 20 H 1.48509 * 109.46823 * 329.99930 * 17 15 13 21 21 C 1.50695 * 109.47626 * 274.99587 * 10 9 7 22 22 C 1.38235 * 119.99980 * 319.73695 * 21 10 9 23 23 C 1.38235 * 120.00049 * 179.80644 * 22 21 10 24 24 C 1.38240 * 119.99759 * 0.39143 * 23 22 21 25 25 C 1.38236 * 120.00249 * 359.85637 * 24 23 22 26 26 C 1.38230 * 119.99723 * 359.95775 * 25 24 23 27 27 H 1.08995 * 109.47246 * 300.00573 * 1 2 3 28 28 H 1.08999 * 109.46571 * 60.00468 * 1 2 3 29 29 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47246 * 239.99427 * 2 1 3 31 31 H 1.08997 * 109.47091 * 119.99525 * 2 1 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 5 3 2 33 33 H 1.09001 * 109.46832 * 305.00142 * 5 3 2 34 34 H 0.96701 * 113.99881 * 180.02562 * 6 5 3 35 35 H 0.96995 * 119.99518 * 359.97438 * 9 7 3 36 36 H 1.09005 * 109.47104 * 55.00385 * 12 10 9 37 37 H 1.09004 * 109.47083 * 174.99940 * 12 10 9 38 38 H 0.96999 * 119.99179 * 180.02562 * 16 15 13 39 39 H 1.07994 * 119.99896 * 359.97438 * 22 21 10 40 40 H 1.08001 * 119.99965 * 180.21941 * 23 22 21 41 41 H 1.08005 * 119.99529 * 179.83091 * 24 23 22 42 42 H 1.07999 * 119.99877 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.99860 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 8 2.0089 3.5050 1.2591 7 6 3.5420 1.4443 -0.1239 8 8 4.1450 0.3951 -0.2038 9 7 4.2150 2.6118 -0.1449 10 6 5.6750 2.6135 -0.2647 11 1 5.9879 1.7897 -0.9064 12 6 6.1350 3.9387 -0.8756 13 6 5.6190 4.0471 -2.2873 14 1 5.0222 3.2506 -2.7068 15 6 5.9078 5.1636 -3.0430 16 7 5.4570 5.2584 -4.2750 17 14 6.9394 6.5415 -2.3174 18 1 8.3749 6.2857 -2.5981 19 1 6.5383 7.8344 -2.9279 20 1 6.7248 6.5998 -0.8490 21 6 6.2915 2.4490 1.1005 22 6 5.7471 3.1056 2.1884 23 6 6.3101 2.9515 3.4414 24 6 7.4224 2.1472 3.6052 25 6 7.9699 1.4946 2.5164 26 6 7.4046 1.6457 1.2641 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.1408 1.6421 2.1426 33 1 0.5563 2.0471 1.4400 34 1 1.7825 4.0020 2.0572 35 1 3.7326 3.4508 -0.0806 36 1 5.7467 4.7665 -0.2821 37 1 7.2244 3.9767 -0.8830 38 1 5.6606 6.0437 -4.8067 39 1 4.8803 3.7368 2.0597 40 1 5.8826 3.4617 4.2919 41 1 7.8639 2.0290 4.5838 42 1 8.8392 0.8666 2.6444 43 1 7.8320 1.1356 0.4136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779815318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:38 Heat of formation + Delta-G solvation = -82.050508 kcal Electronic energy + Delta-G solvation = -23981.347719 eV Core-core repulsion = 20604.633782 eV Total energy + Delta-G solvation = -3376.713938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.84008 -38.67922 -36.87454 -35.36483 -34.23239 -32.57799 -31.17926 -30.51473 -29.34195 -28.58976 -25.15276 -24.41526 -22.33714 -21.72234 -21.66630 -19.77572 -19.39184 -17.49464 -17.17387 -16.72726 -16.28978 -15.53746 -15.39893 -14.84975 -14.54608 -14.30068 -14.01845 -13.60869 -13.41284 -13.13284 -13.06610 -12.81527 -12.71614 -12.45136 -12.36291 -11.89445 -11.59301 -11.51904 -11.29061 -11.09605 -11.01062 -10.69168 -10.58729 -10.57689 -10.10777 -10.09435 -9.80204 -9.29667 -9.14189 -8.59698 -8.56021 -8.31736 -8.23290 -6.06673 -4.05623 1.71961 1.74595 3.21215 3.29057 3.36845 3.39770 3.79553 4.15098 4.20060 4.42210 4.88443 5.00347 5.05493 5.20505 5.23092 5.27102 5.29353 5.30779 5.34713 5.37629 5.50609 5.69921 5.78503 5.81971 5.87203 5.88461 6.01472 6.13161 6.20726 6.29770 6.35326 6.36753 6.49528 6.78355 6.79550 6.93838 6.99788 7.14217 7.34964 7.45382 7.55136 7.70448 8.32285 8.49553 8.94202 8.99427 9.54439 11.06296 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.006803 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.126111 B = 4114.649661 C = 5833.137978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 C -0.111 4.111 4 H 0.104 0.896 5 C 0.086 3.914 6 O -0.568 6.568 7 C 0.517 3.483 8 O -0.557 6.557 9 N -0.688 5.688 10 C 0.191 3.809 11 H 0.089 0.911 12 C -0.013 4.013 13 C -0.517 4.517 14 H 0.075 0.925 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.876 3.124 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.074 4.074 22 C -0.107 4.107 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.108 4.108 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.381 0.619 35 H 0.410 0.590 36 H 0.023 0.977 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -5.513 15.630 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.132 4.132 4 H 0.122 0.878 5 C 0.008 3.992 6 O -0.374 6.374 7 C 0.303 3.697 8 O -0.437 6.437 9 N -0.338 5.338 10 C 0.087 3.913 11 H 0.107 0.893 12 C -0.051 4.051 13 C -0.555 4.555 14 H 0.093 0.907 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.703 3.297 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.076 4.076 22 C -0.125 4.125 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.127 4.127 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.228 0.772 35 H 0.248 0.752 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.684 -6.285 14.804 17.058 hybrid contribution 0.158 1.415 0.802 1.634 sum -5.526 -4.869 15.606 17.257 Atomic orbital electron populations 1.21882 0.95694 1.01783 1.01859 1.21247 0.94962 0.93773 1.03889 1.21408 0.94081 0.98263 0.99469 0.87768 1.22136 0.98547 0.82069 0.96441 1.86435 1.85140 1.21459 1.44328 1.20297 0.89121 0.84101 0.76205 1.90640 1.70234 1.31708 1.51080 1.45959 1.07191 1.08854 1.71800 1.19941 0.79185 1.01619 0.90599 0.89298 1.19860 0.96937 0.91141 0.97142 1.21016 1.33576 1.05440 0.95490 0.90677 1.24983 0.95487 0.98041 0.94643 1.69914 1.45788 1.29396 1.08673 0.86846 0.81007 0.81873 0.79975 1.20263 1.21374 1.18969 1.20613 0.95244 0.95138 0.96556 1.20984 1.00003 0.99350 0.92183 1.21045 0.96867 0.99561 0.97059 1.21004 0.97185 0.98754 0.98350 1.21046 1.00000 1.00163 0.92958 1.21056 0.96080 0.98277 0.97278 0.92761 0.92422 0.92465 0.90364 0.91393 0.93439 0.92565 0.77197 0.75189 0.95845 0.95441 0.92709 0.86146 0.86796 0.86863 0.86582 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 37.16 0.36 -1.11 16 2 C -0.10 -1.26 4.75 -26.73 -0.13 -1.39 16 3 C -0.11 -1.56 2.49 -91.77 -0.23 -1.79 16 4 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 5 C 0.09 0.95 6.28 37.16 0.23 1.18 16 6 O -0.57 -6.43 11.43 -35.23 -0.40 -6.83 16 7 C 0.52 9.62 7.11 -10.98 -0.08 9.55 16 8 O -0.56 -12.06 15.58 5.56 0.09 -11.97 16 9 N -0.69 -13.17 3.78 -54.93 -0.21 -13.38 16 10 C 0.19 3.98 2.11 -69.09 -0.15 3.84 16 11 H 0.09 2.05 7.44 -51.92 -0.39 1.66 16 12 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 13 C -0.52 -14.32 9.39 -34.44 -0.32 -14.64 16 14 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 17 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 21 C -0.07 -1.37 4.91 -104.62 -0.51 -1.88 16 22 C -0.11 -1.75 9.32 -39.58 -0.37 -2.12 16 23 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 24 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 25 C -0.12 -1.82 10.05 -39.59 -0.40 -2.21 16 26 C -0.11 -1.86 9.67 -39.58 -0.38 -2.25 16 27 H 0.05 0.44 6.46 -51.93 -0.34 0.11 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.49 6.34 -51.93 -0.33 0.16 16 34 H 0.38 2.53 9.12 45.56 0.42 2.95 16 35 H 0.41 7.66 6.67 -40.82 -0.27 7.39 16 36 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 37 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.12 1.87 7.73 -52.49 -0.41 1.46 16 40 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.11 1.24 8.06 -52.48 -0.42 0.81 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -33.34 353.56 -7.94 -41.28 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.88 Total: 11.21 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -2.97 Total: -15.79 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.57 Total: -39.92 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.32 Total: -18.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.34 -7.94 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779815318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.768 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds