Wall clock time and date at job start Tue Mar 31 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47085 * 2 1 4 4 H 1.09004 * 109.46881 * 304.99377 * 3 2 1 5 5 C 1.52997 * 109.47504 * 64.99737 * 3 2 1 6 6 O 1.42898 * 109.47319 * 185.00258 * 5 3 2 7 7 C 1.50705 * 109.47056 * 185.00259 * 3 2 1 8 8 O 1.21281 * 119.99661 * 359.97438 * 7 3 2 9 9 N 1.34780 * 119.99956 * 180.02562 * 7 3 2 10 10 C 1.46493 * 119.99866 * 179.97438 * 9 7 3 11 11 H 1.09008 * 109.47314 * 35.00005 * 10 9 7 12 12 C 1.52999 * 109.46952 * 154.99666 * 10 9 7 13 13 C 1.50703 * 109.47395 * 294.99901 * 12 10 9 14 14 H 1.08004 * 119.99565 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99872 * 179.97438 * 13 12 10 16 16 N 1.31523 * 119.99567 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00445 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47184 * 89.99787 * 17 15 13 19 19 H 1.48499 * 109.47381 * 210.00201 * 17 15 13 20 20 H 1.48509 * 109.46823 * 329.99930 * 17 15 13 21 21 C 1.50695 * 109.47626 * 274.99587 * 10 9 7 22 22 C 1.38235 * 119.99980 * 319.73695 * 21 10 9 23 23 C 1.38235 * 120.00049 * 179.80644 * 22 21 10 24 24 C 1.38240 * 119.99759 * 0.39143 * 23 22 21 25 25 C 1.38236 * 120.00249 * 359.85637 * 24 23 22 26 26 C 1.38230 * 119.99723 * 359.95775 * 25 24 23 27 27 H 1.08995 * 109.47246 * 300.00573 * 1 2 3 28 28 H 1.08999 * 109.46571 * 60.00468 * 1 2 3 29 29 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47246 * 239.99427 * 2 1 3 31 31 H 1.08997 * 109.47091 * 119.99525 * 2 1 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 5 3 2 33 33 H 1.09001 * 109.46832 * 305.00142 * 5 3 2 34 34 H 0.96701 * 113.99881 * 180.02562 * 6 5 3 35 35 H 0.96995 * 119.99518 * 359.97438 * 9 7 3 36 36 H 1.09005 * 109.47104 * 55.00385 * 12 10 9 37 37 H 1.09004 * 109.47083 * 174.99940 * 12 10 9 38 38 H 0.96999 * 119.99179 * 180.02562 * 16 15 13 39 39 H 1.07994 * 119.99896 * 359.97438 * 22 21 10 40 40 H 1.08001 * 119.99965 * 180.21941 * 23 22 21 41 41 H 1.08005 * 119.99529 * 179.83091 * 24 23 22 42 42 H 1.07999 * 119.99877 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.99860 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 8 2.0089 3.5050 1.2591 7 6 3.5420 1.4443 -0.1239 8 8 4.1450 0.3951 -0.2038 9 7 4.2150 2.6118 -0.1449 10 6 5.6750 2.6135 -0.2647 11 1 5.9879 1.7897 -0.9064 12 6 6.1350 3.9387 -0.8756 13 6 5.6190 4.0471 -2.2873 14 1 5.0222 3.2506 -2.7068 15 6 5.9078 5.1636 -3.0430 16 7 5.4570 5.2584 -4.2750 17 14 6.9394 6.5415 -2.3174 18 1 8.3749 6.2857 -2.5981 19 1 6.5383 7.8344 -2.9279 20 1 6.7248 6.5998 -0.8490 21 6 6.2915 2.4490 1.1005 22 6 5.7471 3.1056 2.1884 23 6 6.3101 2.9515 3.4414 24 6 7.4224 2.1472 3.6052 25 6 7.9699 1.4946 2.5164 26 6 7.4046 1.6457 1.2641 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.1408 1.6421 2.1426 33 1 0.5563 2.0471 1.4400 34 1 1.7825 4.0020 2.0572 35 1 3.7326 3.4508 -0.0806 36 1 5.7467 4.7665 -0.2821 37 1 7.2244 3.9767 -0.8830 38 1 5.6606 6.0437 -4.8067 39 1 4.8803 3.7368 2.0597 40 1 5.8826 3.4617 4.2919 41 1 7.8639 2.0290 4.5838 42 1 8.8392 0.8666 2.6444 43 1 7.8320 1.1356 0.4136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779815318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:38 Heat of formation + Delta-G solvation = -105.162853 kcal Electronic energy + Delta-G solvation = -23982.349946 eV Core-core repulsion = 20604.633782 eV Total energy + Delta-G solvation = -3377.716164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25660 -39.91290 -37.91482 -36.89455 -35.33552 -34.66467 -32.64020 -31.70193 -30.98416 -29.69097 -26.78122 -25.46564 -23.59896 -23.36320 -22.86121 -21.24397 -20.75015 -19.08195 -18.36893 -18.21260 -17.63737 -16.94626 -16.62388 -16.35024 -16.01762 -15.64941 -15.25017 -14.84497 -14.82936 -14.58259 -14.24993 -14.14521 -14.03063 -13.82186 -13.62923 -13.56903 -13.03301 -12.71065 -12.53951 -12.50044 -12.40487 -12.02119 -11.93178 -11.74177 -11.71941 -11.56210 -11.43703 -11.05412 -10.79953 -10.53854 -9.90487 -9.75204 -9.53367 -8.29307 -6.34153 0.49880 0.56014 1.36322 1.36639 1.48834 1.75237 2.34864 2.40481 2.96619 3.06197 3.26682 3.76386 3.91207 3.97798 4.03509 4.15203 4.21484 4.31426 4.33484 4.42071 4.42232 4.53168 4.58565 4.68530 4.73710 4.77005 4.84203 4.94333 5.02107 5.14119 5.17035 5.18843 5.23989 5.28666 5.44367 5.54186 5.62965 5.64197 5.66331 5.90881 6.18282 6.24618 6.70847 6.80052 6.96452 7.29455 7.45449 8.87295 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.006803 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.126111 B = 4114.649661 C = 5833.137978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.108 4.108 4 H 0.099 0.901 5 C 0.095 3.905 6 O -0.588 6.588 7 C 0.507 3.493 8 O -0.596 6.596 9 N -0.686 5.686 10 C 0.199 3.801 11 H 0.049 0.951 12 C -0.002 4.002 13 C -0.521 4.521 14 H 0.028 0.972 15 C 0.011 3.989 16 N -0.947 5.947 17 Si 0.948 3.052 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.243 1.243 21 C -0.100 4.100 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.124 4.124 26 C -0.134 4.134 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.402 0.598 35 H 0.413 0.587 36 H 0.035 0.965 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 -4.305 19.571 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.129 4.129 4 H 0.117 0.883 5 C 0.017 3.983 6 O -0.397 6.397 7 C 0.295 3.705 8 O -0.478 6.478 9 N -0.336 5.336 10 C 0.094 3.906 11 H 0.067 0.933 12 C -0.040 4.040 13 C -0.559 4.559 14 H 0.046 0.954 15 C -0.187 4.187 16 N -0.588 5.588 17 Si 0.771 3.229 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.167 1.167 21 C -0.101 4.101 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.152 4.152 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.253 0.747 35 H 0.251 0.749 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.160 0.840 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.886 -5.068 18.775 20.318 hybrid contribution 0.220 0.947 -0.444 1.069 sum -5.666 -4.121 18.330 19.624 Atomic orbital electron populations 1.21839 0.92737 1.02964 1.02874 1.21216 0.97376 0.92392 1.02531 1.21493 0.90179 0.99818 1.01450 0.88312 1.22075 1.00380 0.81803 0.94048 1.86379 1.85547 1.21658 1.46127 1.21207 0.91173 0.83175 0.74975 1.90606 1.71570 1.32882 1.52749 1.45958 1.06609 1.09313 1.71695 1.19562 0.80479 0.98582 0.91990 0.93277 1.19703 0.96645 0.93048 0.94615 1.21185 1.32833 1.04116 0.97750 0.95402 1.25926 0.96851 1.00999 0.94891 1.70072 1.47677 1.30580 1.10452 0.85701 0.78955 0.78016 0.80227 1.19642 1.20781 1.16674 1.20393 0.96501 0.97658 0.95588 1.21110 1.00349 0.99386 0.92580 1.21449 0.96546 0.99033 0.96956 1.21487 0.96435 0.97028 0.99528 1.21368 1.00546 1.00222 0.92033 1.21172 0.96516 0.98989 0.98552 0.90600 0.92464 0.91278 0.93033 0.91569 0.93223 0.89174 0.74695 0.74887 0.94724 0.95438 0.92482 0.85680 0.83273 0.83067 0.83985 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.67 71.98 0.70 -1.82 16 2 C -0.10 -2.44 4.75 30.59 0.15 -2.30 16 3 C -0.11 -3.07 2.49 -11.54 -0.03 -3.10 16 4 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 5 C 0.09 1.91 6.28 71.98 0.45 2.36 16 6 O -0.59 -12.26 11.43 -148.98 -1.70 -13.96 16 7 C 0.51 19.85 7.11 87.66 0.62 20.47 16 8 O -0.60 -27.56 15.58 -3.03 -0.05 -27.61 16 9 N -0.69 -27.48 3.78 -446.10 -1.69 -29.16 16 10 C 0.20 8.74 2.11 44.24 0.09 8.83 16 11 H 0.05 2.49 7.44 -2.38 -0.02 2.47 16 12 C 0.00 -0.12 3.56 29.85 0.11 -0.01 16 13 C -0.52 -30.24 9.39 25.60 0.24 -29.99 16 14 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 15 C 0.01 0.61 5.47 84.65 0.46 1.08 16 16 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 17 Si 0.95 44.14 27.47 68.60 1.88 46.02 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 21 C -0.10 -3.74 4.91 -19.87 -0.10 -3.84 16 22 C -0.12 -3.61 9.32 22.27 0.21 -3.40 16 23 C -0.12 -3.00 10.05 22.27 0.22 -2.78 16 24 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 25 C -0.12 -3.36 10.05 22.27 0.22 -3.13 16 26 C -0.13 -4.64 9.67 22.27 0.22 -4.42 16 27 H 0.08 0.98 6.46 -2.39 -0.02 0.97 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.54 7.95 -2.39 -0.02 1.52 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.24 6.34 -2.39 -0.02 1.23 16 34 H 0.40 4.26 9.12 -74.06 -0.68 3.58 16 35 H 0.41 15.85 6.67 -92.71 -0.62 15.23 16 36 H 0.03 1.58 7.20 -2.38 -0.02 1.56 16 37 H 0.03 1.31 7.57 -2.38 -0.02 1.29 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.13 3.67 7.73 -2.91 -0.02 3.64 16 40 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 41 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 43 H 0.11 3.87 8.04 -2.91 -0.02 3.85 16 Total: -1.00 -77.07 353.56 2.20 -74.87 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.34 Total: 33.96 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 3.79 Total: -24.79 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -1.39 Total: -88.49 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.75 Total: -41.57 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -77.07 2.20 -74.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779815318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.291 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds