Wall clock time and date at job start Tue Mar 31 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 H 1.09000 * 109.47050 * 306.48484 * 3 2 1 5 5 C 1.53003 * 109.47325 * 186.48439 * 3 2 1 6 6 O 1.42899 * 109.47085 * 65.12098 * 5 3 2 7 7 C 1.50697 * 109.46890 * 66.48279 * 3 2 1 8 8 O 1.21281 * 119.99998 * 0.02562 * 7 3 2 9 9 N 1.34776 * 119.99804 * 179.97438 * 7 3 2 10 10 C 1.46503 * 119.99968 * 174.96440 * 9 7 3 11 11 H 1.09004 * 109.47007 * 37.97810 * 10 9 7 12 12 C 1.53006 * 109.47225 * 157.96859 * 10 9 7 13 13 C 1.50699 * 109.47046 * 294.32087 * 12 10 9 14 14 H 1.08001 * 120.00069 * 4.89500 * 13 12 10 15 15 C 1.37880 * 119.99892 * 184.89503 * 13 12 10 16 16 N 1.31517 * 119.99821 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47051 * 89.99824 * 17 15 13 19 19 H 1.48500 * 109.46701 * 209.99968 * 17 15 13 20 20 H 1.48498 * 109.46876 * 329.99423 * 17 15 13 21 21 C 1.50693 * 109.47300 * 277.97138 * 10 9 7 22 22 C 1.38235 * 120.00165 * 319.72418 * 21 10 9 23 23 C 1.38234 * 120.00029 * 179.81021 * 22 21 10 24 24 C 1.38241 * 120.00016 * 0.39696 * 23 22 21 25 25 C 1.38230 * 119.99832 * 359.85904 * 24 23 22 26 26 C 1.38237 * 120.00404 * 359.95075 * 25 24 23 27 27 H 1.08998 * 109.47155 * 174.36867 * 1 2 3 28 28 H 1.08997 * 109.47264 * 54.36412 * 1 2 3 29 29 H 1.09006 * 109.46736 * 294.36422 * 1 2 3 30 30 H 1.09000 * 109.47362 * 120.00611 * 2 1 3 31 31 H 1.09009 * 109.46926 * 240.00535 * 2 1 3 32 32 H 1.08999 * 109.47449 * 185.12196 * 5 3 2 33 33 H 1.09003 * 109.46778 * 305.12672 * 5 3 2 34 34 H 0.96698 * 113.99922 * 180.02562 * 6 5 3 35 35 H 0.96996 * 120.00571 * 354.97269 * 9 7 3 36 36 H 1.09005 * 109.46629 * 54.31786 * 12 10 9 37 37 H 1.09000 * 109.47104 * 174.31959 * 12 10 9 38 38 H 0.97002 * 120.00043 * 180.02562 * 16 15 13 39 39 H 1.08005 * 119.99724 * 0.02562 * 22 21 10 40 40 H 1.07999 * 119.99923 * 180.23045 * 23 22 21 41 41 H 1.07999 * 119.99686 * 179.83078 * 24 23 22 42 42 H 1.07999 * 120.00087 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00201 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5850 1.9887 -0.8263 5 6 3.5613 1.4456 -0.1629 6 8 3.9037 0.9262 -1.4494 7 6 1.6729 2.1050 1.3028 8 8 1.0638 1.4844 2.1482 9 7 2.0224 3.3869 1.5288 10 6 1.5714 4.0653 2.7465 11 1 1.5936 3.3653 3.5818 12 6 2.4979 5.2456 3.0457 13 6 3.8745 4.7316 3.3797 14 1 4.0904 3.6762 3.3019 15 6 4.8585 5.6085 3.7845 16 7 4.5957 6.8938 3.8786 17 14 6.5652 4.9714 4.1978 18 1 7.4068 4.9809 2.9744 19 1 7.1822 5.8428 5.2299 20 1 6.4631 3.5842 4.7178 21 6 0.1646 4.5682 2.5496 22 6 -0.2066 5.1281 1.3414 23 6 -1.4982 5.5859 1.1596 24 6 -2.4164 5.4913 2.1887 25 6 -2.0437 4.9363 3.3986 26 6 -0.7532 4.4749 3.5792 27 1 -0.3633 -1.0227 -0.1008 28 1 -0.3634 0.5987 -0.8352 29 1 -0.3633 0.4240 0.9362 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.9344 2.4657 -0.0719 33 1 4.0109 0.8238 0.6113 34 1 4.8547 0.8983 -1.6219 35 1 2.5724 3.8604 0.8853 36 1 2.5544 5.8939 2.1711 37 1 2.1057 5.8100 3.8916 38 1 5.2880 7.5108 4.1630 39 1 0.5116 5.2046 0.5384 40 1 -1.7892 6.0198 0.2144 41 1 -3.4247 5.8515 2.0474 42 1 -2.7609 4.8628 4.2027 43 1 -0.4619 4.0417 4.5247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779815319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:41 Heat of formation + Delta-G solvation = -105.581631 kcal Electronic energy + Delta-G solvation = -23789.175916 eV Core-core repulsion = 20411.441592 eV Total energy + Delta-G solvation = -3377.734324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32013 -39.93410 -37.96686 -36.88458 -34.95386 -34.73611 -32.68933 -31.70979 -30.64894 -29.96018 -26.75283 -24.77308 -23.86247 -23.61583 -23.19491 -21.34539 -20.78469 -18.93624 -18.61997 -17.69618 -17.55152 -16.93076 -16.48520 -16.34630 -16.02370 -15.69809 -15.51120 -15.06428 -14.79323 -14.39922 -14.20521 -14.06993 -14.02745 -13.64972 -13.60762 -13.40358 -13.03642 -12.92387 -12.61483 -12.45928 -12.21851 -12.14575 -11.87546 -11.86072 -11.74000 -11.59219 -11.32806 -10.91686 -10.72779 -10.54449 -9.96764 -9.75724 -9.51971 -8.20479 -6.30892 0.50824 0.55700 1.38633 1.41407 1.51142 1.66352 2.30130 2.39480 2.96816 3.13673 3.32286 3.71951 3.85765 4.01738 4.03637 4.10690 4.20719 4.31924 4.33922 4.44557 4.50720 4.53426 4.64885 4.65992 4.76095 4.78671 4.86787 4.95975 5.12328 5.13070 5.19812 5.26258 5.31338 5.42312 5.48815 5.61093 5.62323 5.64300 5.77736 5.91278 6.15549 6.20084 6.69175 6.82216 6.86042 7.34641 7.38395 8.90310 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.007094 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.300356 B = 3945.804624 C = 6339.041029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.101 4.101 4 H 0.114 0.886 5 C 0.089 3.911 6 O -0.576 6.576 7 C 0.517 3.483 8 O -0.572 6.572 9 N -0.698 5.698 10 C 0.200 3.800 11 H 0.057 0.943 12 C 0.038 3.962 13 C -0.529 4.529 14 H 0.057 0.943 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.098 4.098 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.133 4.133 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.401 0.599 35 H 0.407 0.593 36 H 0.010 0.990 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 -7.273 -10.246 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.132 4.132 3 C -0.122 4.122 4 H 0.132 0.868 5 C 0.011 3.989 6 O -0.385 6.385 7 C 0.304 3.696 8 O -0.452 6.452 9 N -0.347 5.347 10 C 0.095 3.905 11 H 0.075 0.925 12 C 0.000 4.000 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.100 4.100 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.152 4.152 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.251 0.749 35 H 0.243 0.757 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.435 -7.585 -9.648 14.892 hybrid contribution 1.957 0.377 0.575 2.074 sum -6.478 -7.208 -9.074 13.276 Atomic orbital electron populations 1.21815 0.95519 1.02015 1.01595 1.21245 0.96357 0.93364 1.02194 1.21375 0.97134 0.98873 0.94819 0.86766 1.21930 0.92812 0.98569 0.85616 1.86364 1.31262 1.87051 1.33816 1.20839 0.78529 0.81445 0.88811 1.90620 1.42770 1.64344 1.47421 1.45973 1.52778 1.12616 1.23378 1.19715 0.89738 0.94184 0.86849 0.92483 1.19131 0.92975 0.91856 0.96002 1.21411 0.96161 0.93830 1.45305 0.92526 1.25800 1.02794 0.94958 0.95310 1.70077 1.35046 1.03207 1.48324 0.85580 0.79830 0.78140 0.78300 1.19225 1.21177 1.19615 1.20456 0.95634 0.98663 0.95205 1.21071 0.97317 0.98839 0.96715 1.21442 0.92864 0.99610 1.00297 1.21466 1.00684 0.99567 0.92969 1.21379 0.95495 0.98537 0.98751 1.21171 0.94447 1.00940 0.98619 0.91741 0.92452 0.93727 0.92975 0.89552 0.92328 0.93402 0.74902 0.75697 0.97179 0.97725 0.92754 0.86112 0.83586 0.83147 0.83948 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.60 71.98 0.69 -3.25 16 2 C -0.09 -2.44 5.01 30.59 0.15 -2.29 16 3 C -0.10 -2.70 2.43 -11.54 -0.03 -2.72 16 4 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 5 C 0.09 2.12 6.37 71.98 0.46 2.58 16 6 O -0.58 -11.64 13.10 -148.98 -1.95 -13.59 16 7 C 0.52 17.95 6.82 87.66 0.60 18.55 16 8 O -0.57 -23.84 13.74 -3.03 -0.04 -23.88 16 9 N -0.70 -25.03 3.99 -446.09 -1.78 -26.81 16 10 C 0.20 8.43 2.11 44.24 0.09 8.53 16 11 H 0.06 2.70 7.47 -2.38 -0.02 2.69 16 12 C 0.04 1.87 4.47 29.85 0.13 2.01 16 13 C -0.53 -28.14 8.85 25.60 0.23 -27.92 16 14 H 0.06 2.97 7.75 -2.91 -0.02 2.95 16 15 C 0.01 0.55 5.46 84.65 0.46 1.01 16 16 N -0.93 -53.63 13.29 21.45 0.28 -53.35 16 17 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 C -0.10 -3.75 4.87 -19.87 -0.10 -3.84 16 22 C -0.12 -4.01 9.32 22.27 0.21 -3.80 16 23 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 24 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 25 C -0.12 -3.57 10.05 22.27 0.22 -3.35 16 26 C -0.13 -4.77 9.67 22.27 0.22 -4.56 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.43 6.20 -2.38 -0.01 1.41 16 30 H 0.05 1.51 7.90 -2.39 -0.02 1.49 16 31 H 0.09 1.98 7.66 -2.38 -0.02 1.96 16 32 H 0.06 1.38 7.32 -2.39 -0.02 1.36 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.40 4.58 9.12 -74.06 -0.68 3.90 16 35 H 0.41 13.31 7.79 -92.71 -0.72 12.59 16 36 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.12 3.74 7.73 -2.91 -0.02 3.72 16 40 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.11 4.00 8.04 -2.91 -0.02 3.98 16 Total: -1.00 -67.98 358.41 1.93 -66.04 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.39 Total: 32.34 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 3.79 Total: -25.30 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.50 Total: -80.16 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.99 Total: -37.47 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.98 1.93 -66.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779815319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.537 kcal (2) G-P(sol) polarization free energy of solvation -67.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds