Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46887 * 2 1 4 4 H 1.09002 * 109.47021 * 306.76076 * 3 2 1 5 5 C 1.53000 * 109.46800 * 186.76265 * 3 2 1 6 6 O 1.42894 * 109.47056 * 63.08470 * 5 3 2 7 7 C 1.50696 * 109.47015 * 66.76295 * 3 2 1 8 8 O 1.21281 * 120.00547 * 0.02562 * 7 3 2 9 9 N 1.34779 * 119.99820 * 179.97438 * 7 3 2 10 10 C 1.46497 * 119.99944 * 180.02562 * 9 7 3 11 11 H 1.09004 * 109.47408 * 324.99555 * 10 9 7 12 12 C 1.53001 * 109.47369 * 204.99930 * 10 9 7 13 13 C 1.50702 * 109.47101 * 64.99617 * 12 10 9 14 14 H 1.08001 * 119.99744 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00080 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00034 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99817 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47528 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47347 * 120.00229 * 17 15 13 20 20 H 1.48503 * 109.47195 * 240.00210 * 17 15 13 21 21 C 1.50699 * 109.47586 * 84.99691 * 10 9 7 22 22 C 1.38232 * 120.00608 * 220.00106 * 21 10 9 23 23 C 1.38235 * 120.00432 * 179.97438 * 22 21 10 24 24 C 1.38234 * 119.99588 * 359.96065 * 23 22 21 25 25 C 1.38231 * 120.00340 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00166 * 0.07648 * 25 24 23 27 27 H 1.09000 * 109.47645 * 64.78442 * 1 2 3 28 28 H 1.08997 * 109.46982 * 184.78949 * 1 2 3 29 29 H 1.09004 * 109.46821 * 304.78527 * 1 2 3 30 30 H 1.09002 * 109.46652 * 240.00346 * 2 1 3 31 31 H 1.08991 * 109.47482 * 120.00196 * 2 1 3 32 32 H 1.09005 * 109.46754 * 183.08327 * 5 3 2 33 33 H 1.08997 * 109.47212 * 303.08350 * 5 3 2 34 34 H 0.96706 * 114.00476 * 179.97438 * 6 5 3 35 35 H 0.96998 * 120.00252 * 359.97438 * 9 7 3 36 36 H 1.08999 * 109.47531 * 184.99835 * 12 10 9 37 37 H 1.09002 * 109.46868 * 305.00285 * 12 10 9 38 38 H 0.96997 * 119.99846 * 180.02562 * 16 15 13 39 39 H 1.08004 * 119.99723 * 359.97438 * 22 21 10 40 40 H 1.07997 * 120.00354 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00186 * 179.72602 * 24 23 22 42 42 H 1.08004 * 120.00083 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00451 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5812 1.9901 -0.8233 5 6 3.5605 1.4459 -0.1699 6 8 3.8992 0.8847 -1.4396 7 6 1.6789 2.1030 1.3055 8 8 1.0737 1.4810 2.1528 9 7 2.0294 3.3845 1.5320 10 6 1.6789 4.0264 2.8014 11 1 0.7122 3.6550 3.1416 12 6 1.6019 5.5415 2.6027 13 6 0.4687 5.8681 1.6644 14 1 -0.1363 5.0744 1.2515 15 6 0.2044 7.1801 1.3331 16 7 0.9414 8.1465 1.8355 17 14 -1.2007 7.5849 0.1707 18 1 -1.8715 6.3292 -0.2514 19 1 -2.1802 8.4598 0.8638 20 1 -0.6679 8.2878 -1.0240 21 6 2.7305 3.7078 3.8327 22 6 2.3597 3.4293 5.1349 23 6 3.3243 3.1366 6.0808 24 6 4.6598 3.1217 5.7242 25 6 5.0306 3.3989 4.4217 26 6 4.0661 3.6926 3.4761 27 1 -0.3634 0.4378 -0.9297 28 1 -0.3633 -1.0241 0.0858 29 1 -0.3633 0.5863 0.8441 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.9300 2.4699 -0.1150 33 1 4.0160 0.8524 0.6228 34 1 4.8496 0.8552 -1.6159 35 1 2.5144 3.8816 0.8549 36 1 1.4289 6.0257 3.5638 37 1 2.5397 5.9004 2.1785 38 1 0.7552 9.0695 1.6028 39 1 1.3162 3.4403 5.4133 40 1 3.0347 2.9193 7.0982 41 1 5.4139 2.8973 6.4641 42 1 6.0741 3.3876 4.1432 43 1 4.3557 3.9096 2.4586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779815320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = -85.502314 kcal Electronic energy + Delta-G solvation = -23789.407102 eV Core-core repulsion = 20412.543483 eV Total energy + Delta-G solvation = -3376.863619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.94813 -38.69677 -36.99641 -35.36606 -33.78808 -32.78343 -31.29214 -30.50409 -29.28881 -28.49804 -25.03354 -23.70305 -22.41244 -22.22827 -21.89964 -19.92135 -19.45271 -17.90694 -16.85447 -16.38411 -16.17194 -15.43839 -15.29021 -14.87800 -14.63915 -14.54063 -14.16912 -13.72762 -13.53820 -13.05429 -12.82742 -12.77855 -12.58266 -12.46488 -12.13581 -11.94760 -11.56482 -11.15768 -11.11341 -10.93059 -10.77761 -10.73198 -10.70113 -10.58460 -10.46212 -10.03591 -9.80093 -9.37831 -9.22358 -8.57819 -8.48832 -8.42304 -8.21103 -6.11528 -4.15031 1.74931 1.76994 3.02111 3.24879 3.33663 3.38087 3.65521 4.17539 4.31259 4.38466 4.78912 4.99029 5.12622 5.23336 5.23847 5.25387 5.33333 5.36187 5.48756 5.50620 5.57917 5.75193 5.87394 5.90808 5.93929 6.04926 6.14063 6.21745 6.32766 6.40664 6.41776 6.55488 6.61852 6.81102 6.82559 6.90563 7.08359 7.37287 7.46702 7.48104 7.59708 7.85352 8.09829 8.23537 8.73965 8.91234 9.50407 10.99027 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008985 B = 0.006816 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.675077 B = 4107.267864 C = 6105.795494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.110 4.110 4 H 0.103 0.897 5 C 0.087 3.913 6 O -0.569 6.569 7 C 0.518 3.482 8 O -0.540 6.540 9 N -0.700 5.700 10 C 0.183 3.817 11 H 0.087 0.913 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.070 4.070 22 C -0.108 4.108 23 C -0.122 4.122 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.109 4.109 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.379 0.621 35 H 0.400 0.600 36 H 0.034 0.966 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.275 -12.011 -0.473 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.134 4.134 3 C -0.132 4.132 4 H 0.121 0.879 5 C 0.009 3.991 6 O -0.375 6.375 7 C 0.303 3.697 8 O -0.418 6.418 9 N -0.349 5.349 10 C 0.079 3.921 11 H 0.105 0.895 12 C -0.014 4.014 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.071 4.071 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.127 4.127 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.226 0.774 35 H 0.235 0.765 36 H 0.052 0.948 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.191 -12.298 0.097 14.246 hybrid contribution 0.133 0.847 -0.873 1.224 sum 7.325 -11.451 -0.775 13.615 Atomic orbital electron populations 1.21875 0.95512 1.01671 1.02391 1.21238 0.96418 0.93622 1.02090 1.21404 0.95658 0.99072 0.97054 0.87907 1.22048 0.94269 0.97438 0.85371 1.86461 1.29073 1.85390 1.36541 1.20251 0.79363 0.82139 0.87976 1.90636 1.40935 1.63866 1.46313 1.46058 1.57729 1.11942 1.19180 1.20250 0.94699 0.96795 0.80357 0.89487 1.19395 0.97908 0.85821 0.98249 1.21175 1.14922 0.92226 1.27510 0.92312 1.24988 0.96422 0.96467 0.96267 1.69966 1.39228 0.99766 1.44108 0.86548 0.82355 0.78482 0.80734 1.19691 1.20966 1.20996 1.20555 0.95088 0.96265 0.95226 1.21023 0.99561 0.99138 0.92917 1.21046 0.93169 1.00748 0.99044 1.20993 0.95977 1.02087 0.96260 1.21034 0.98857 1.00802 0.93640 1.20888 0.92541 1.00064 0.99242 0.93455 0.93199 0.90803 0.91168 0.91637 0.92985 0.93146 0.77376 0.76544 0.94773 0.95777 0.92907 0.86177 0.86598 0.86843 0.86768 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.71 37.16 0.36 -1.87 16 2 C -0.10 -1.32 5.00 -26.73 -0.13 -1.45 16 3 C -0.11 -1.55 2.43 -91.77 -0.22 -1.77 16 4 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 5 C 0.09 1.00 6.37 37.16 0.24 1.24 16 6 O -0.57 -6.08 13.00 -35.23 -0.46 -6.54 16 7 C 0.52 8.91 6.79 -10.99 -0.07 8.84 16 8 O -0.54 -10.89 13.76 5.56 0.08 -10.81 16 9 N -0.70 -12.28 3.90 -54.93 -0.21 -12.50 16 10 C 0.18 3.66 2.11 -69.08 -0.15 3.51 16 11 H 0.09 1.91 7.44 -51.93 -0.39 1.53 16 12 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 13 C -0.52 -13.66 8.84 -34.44 -0.30 -13.96 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.07 -1.27 4.91 -104.62 -0.51 -1.79 16 22 C -0.11 -1.85 9.67 -39.58 -0.38 -2.23 16 23 C -0.12 -1.81 10.05 -39.58 -0.40 -2.20 16 24 C -0.14 -1.87 10.05 -39.59 -0.40 -2.27 16 25 C -0.13 -1.80 10.05 -39.59 -0.40 -2.19 16 26 C -0.11 -1.77 9.32 -39.58 -0.37 -2.14 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.24 6.04 -51.93 -0.31 0.92 16 30 H 0.07 0.89 7.59 -51.93 -0.39 0.50 16 31 H 0.06 0.95 7.89 -51.93 -0.41 0.54 16 32 H 0.05 0.55 7.48 -51.93 -0.39 0.16 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.38 2.27 9.12 45.56 0.42 2.68 16 35 H 0.40 6.49 7.98 -40.82 -0.33 6.16 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.12 1.98 8.04 -52.48 -0.42 1.56 16 40 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.12 1.72 7.72 -52.49 -0.40 1.32 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -31.35 358.44 -8.42 -39.77 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.98 Total: 9.74 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.97 Total: -16.32 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.52 Total: -37.20 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.38 Total: -17.35 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.35 -8.42 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779815320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.732 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds