Wall clock time and date at job start Tue Mar 31 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46887 * 2 1 4 4 H 1.09002 * 109.47021 * 306.76076 * 3 2 1 5 5 C 1.53000 * 109.46800 * 186.76265 * 3 2 1 6 6 O 1.42894 * 109.47056 * 63.08470 * 5 3 2 7 7 C 1.50696 * 109.47015 * 66.76295 * 3 2 1 8 8 O 1.21281 * 120.00547 * 0.02562 * 7 3 2 9 9 N 1.34779 * 119.99820 * 179.97438 * 7 3 2 10 10 C 1.46497 * 119.99944 * 180.02562 * 9 7 3 11 11 H 1.09004 * 109.47408 * 324.99555 * 10 9 7 12 12 C 1.53001 * 109.47369 * 204.99930 * 10 9 7 13 13 C 1.50702 * 109.47101 * 64.99617 * 12 10 9 14 14 H 1.08001 * 119.99744 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00080 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00034 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99817 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47528 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47347 * 120.00229 * 17 15 13 20 20 H 1.48503 * 109.47195 * 240.00210 * 17 15 13 21 21 C 1.50699 * 109.47586 * 84.99691 * 10 9 7 22 22 C 1.38232 * 120.00608 * 220.00106 * 21 10 9 23 23 C 1.38235 * 120.00432 * 179.97438 * 22 21 10 24 24 C 1.38234 * 119.99588 * 359.96065 * 23 22 21 25 25 C 1.38231 * 120.00340 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00166 * 0.07648 * 25 24 23 27 27 H 1.09000 * 109.47645 * 64.78442 * 1 2 3 28 28 H 1.08997 * 109.46982 * 184.78949 * 1 2 3 29 29 H 1.09004 * 109.46821 * 304.78527 * 1 2 3 30 30 H 1.09002 * 109.46652 * 240.00346 * 2 1 3 31 31 H 1.08991 * 109.47482 * 120.00196 * 2 1 3 32 32 H 1.09005 * 109.46754 * 183.08327 * 5 3 2 33 33 H 1.08997 * 109.47212 * 303.08350 * 5 3 2 34 34 H 0.96706 * 114.00476 * 179.97438 * 6 5 3 35 35 H 0.96998 * 120.00252 * 359.97438 * 9 7 3 36 36 H 1.08999 * 109.47531 * 184.99835 * 12 10 9 37 37 H 1.09002 * 109.46868 * 305.00285 * 12 10 9 38 38 H 0.96997 * 119.99846 * 180.02562 * 16 15 13 39 39 H 1.08004 * 119.99723 * 359.97438 * 22 21 10 40 40 H 1.07997 * 120.00354 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00186 * 179.72602 * 24 23 22 42 42 H 1.08004 * 120.00083 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00451 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5812 1.9901 -0.8233 5 6 3.5605 1.4459 -0.1699 6 8 3.8992 0.8847 -1.4396 7 6 1.6789 2.1030 1.3055 8 8 1.0737 1.4810 2.1528 9 7 2.0294 3.3845 1.5320 10 6 1.6789 4.0264 2.8014 11 1 0.7122 3.6550 3.1416 12 6 1.6019 5.5415 2.6027 13 6 0.4687 5.8681 1.6644 14 1 -0.1363 5.0744 1.2515 15 6 0.2044 7.1801 1.3331 16 7 0.9414 8.1465 1.8355 17 14 -1.2007 7.5849 0.1707 18 1 -1.8715 6.3292 -0.2514 19 1 -2.1802 8.4598 0.8638 20 1 -0.6679 8.2878 -1.0240 21 6 2.7305 3.7078 3.8327 22 6 2.3597 3.4293 5.1349 23 6 3.3243 3.1366 6.0808 24 6 4.6598 3.1217 5.7242 25 6 5.0306 3.3989 4.4217 26 6 4.0661 3.6926 3.4761 27 1 -0.3634 0.4378 -0.9297 28 1 -0.3633 -1.0241 0.0858 29 1 -0.3633 0.5863 0.8441 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.9300 2.4699 -0.1150 33 1 4.0160 0.8524 0.6228 34 1 4.8496 0.8552 -1.6159 35 1 2.5144 3.8816 0.8549 36 1 1.4289 6.0257 3.5638 37 1 2.5397 5.9004 2.1785 38 1 0.7552 9.0695 1.6028 39 1 1.3162 3.4403 5.4133 40 1 3.0347 2.9193 7.0982 41 1 5.4139 2.8973 6.4641 42 1 6.0741 3.3876 4.1432 43 1 4.3557 3.9096 2.4586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779815320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:43 Heat of formation + Delta-G solvation = -105.779678 kcal Electronic energy + Delta-G solvation = -23790.286394 eV Core-core repulsion = 20412.543483 eV Total energy + Delta-G solvation = -3377.742912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32304 -39.92987 -37.97003 -36.88122 -34.94850 -34.74310 -32.68748 -31.70140 -30.66975 -29.95619 -26.76292 -24.77522 -23.87268 -23.63046 -23.15407 -21.35270 -20.78974 -19.00156 -18.56829 -17.70070 -17.55367 -16.90092 -16.46894 -16.41254 -16.05229 -15.65293 -15.45362 -15.05461 -14.78507 -14.47680 -14.20052 -14.05600 -14.01279 -13.66017 -13.63307 -13.38747 -13.05492 -12.93558 -12.63578 -12.49750 -12.24960 -12.09400 -11.88753 -11.81312 -11.73422 -11.59546 -11.32200 -10.89806 -10.75110 -10.56607 -9.95472 -9.74987 -9.51657 -8.21954 -6.31906 0.51540 0.56394 1.36985 1.39982 1.51155 1.67379 2.29892 2.38632 2.97396 3.12319 3.33065 3.73852 3.88248 4.00009 4.03607 4.10676 4.21492 4.32445 4.33491 4.43592 4.50368 4.51615 4.64842 4.65960 4.76613 4.79099 4.87045 4.96583 5.11229 5.12877 5.20435 5.25523 5.30523 5.41425 5.47761 5.61475 5.62047 5.64846 5.77128 5.91189 6.15492 6.20304 6.68961 6.81177 6.90537 7.34502 7.37631 8.88940 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008985 B = 0.006816 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.675077 B = 4107.267864 C = 6105.795494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.107 4.107 4 H 0.105 0.895 5 C 0.095 3.905 6 O -0.579 6.579 7 C 0.517 3.483 8 O -0.573 6.573 9 N -0.696 5.696 10 C 0.200 3.800 11 H 0.056 0.944 12 C 0.038 3.962 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.275 1.275 21 C -0.097 4.097 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.120 4.120 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.401 0.599 35 H 0.407 0.593 36 H 0.003 0.997 37 H 0.013 0.987 38 H 0.264 0.736 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 -13.030 -1.190 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.129 4.129 3 C -0.128 4.128 4 H 0.123 0.877 5 C 0.017 3.983 6 O -0.388 6.388 7 C 0.304 3.696 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.095 3.905 11 H 0.075 0.925 12 C 0.000 4.000 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.780 3.220 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.099 4.099 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.138 4.138 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.243 0.757 36 H 0.021 0.979 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.932 -13.324 -0.641 16.053 hybrid contribution -0.362 1.131 -0.596 1.329 sum 8.570 -12.193 -1.237 14.954 Atomic orbital electron populations 1.21847 0.96061 1.02068 1.01357 1.21217 0.95921 0.93373 1.02352 1.21384 0.97952 0.98798 0.94659 0.87704 1.21878 0.92089 0.98272 0.86073 1.86397 1.31389 1.85244 1.35724 1.20818 0.78373 0.81599 0.88794 1.90622 1.42300 1.64492 1.47828 1.45953 1.57775 1.12265 1.18552 1.19707 0.94520 0.94123 0.82173 0.92547 1.19134 0.96496 0.88441 0.95898 1.21433 1.15397 0.92232 1.27636 0.92912 1.25760 0.98753 0.96403 0.97805 1.70070 1.40846 1.00149 1.45470 0.85553 0.79343 0.78187 0.78895 1.19405 1.20783 1.20002 1.20437 0.95525 0.98806 0.95098 1.21165 1.00027 1.00614 0.93448 1.21375 0.93338 0.99775 0.99695 1.21469 0.96216 1.00130 0.96910 1.21444 1.00037 0.99234 0.93388 1.21066 0.92044 1.00352 1.00375 0.92667 0.91763 0.93919 0.89478 0.92540 0.91991 0.92737 0.74807 0.75747 0.97908 0.96849 0.92702 0.87170 0.84027 0.83164 0.83424 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 9.71 71.98 0.70 -3.66 16 2 C -0.09 -2.40 5.00 30.60 0.15 -2.25 16 3 C -0.11 -2.90 2.43 -11.54 -0.03 -2.93 16 4 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 5 C 0.10 2.01 6.37 71.98 0.46 2.46 16 6 O -0.58 -10.75 13.00 -148.98 -1.94 -12.68 16 7 C 0.52 18.12 6.79 87.66 0.60 18.72 16 8 O -0.57 -23.98 13.76 -3.03 -0.04 -24.02 16 9 N -0.70 -25.09 3.90 -446.10 -1.74 -26.83 16 10 C 0.20 8.41 2.11 44.25 0.09 8.51 16 11 H 0.06 2.68 7.44 -2.38 -0.02 2.66 16 12 C 0.04 1.88 4.49 29.85 0.13 2.01 16 13 C -0.53 -28.65 8.84 25.60 0.23 -28.43 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 15 C 0.01 0.63 5.46 84.65 0.46 1.10 16 16 N -0.93 -53.80 13.29 21.45 0.28 -53.51 16 17 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 C -0.10 -3.65 4.91 -19.86 -0.10 -3.75 16 22 C -0.13 -4.73 9.67 22.27 0.22 -4.52 16 23 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 24 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 25 C -0.12 -3.20 10.05 22.27 0.22 -2.98 16 26 C -0.12 -3.82 9.32 22.27 0.21 -3.61 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.46 6.04 -2.38 -0.01 1.45 16 30 H 0.09 2.03 7.59 -2.39 -0.02 2.01 16 31 H 0.06 1.59 7.89 -2.39 -0.02 1.57 16 32 H 0.06 1.18 7.48 -2.38 -0.02 1.17 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.40 3.55 9.12 -74.05 -0.68 2.87 16 35 H 0.41 13.35 7.98 -92.71 -0.74 12.61 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.11 3.93 8.04 -2.91 -0.02 3.91 16 40 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 42 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 43 H 0.12 3.58 7.72 -2.91 -0.02 3.55 16 Total: -1.00 -69.25 358.44 1.97 -67.27 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.41 Total: 29.85 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 3.79 Total: -25.57 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.46 Total: -80.34 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.98 Total: -36.70 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.25 1.97 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779815320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.506 kcal (2) G-P(sol) polarization free energy of solvation -69.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds