Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 H 1.09006 * 109.47216 * 306.26858 * 3 2 1 5 5 C 1.53006 * 109.47064 * 186.27076 * 3 2 1 6 6 N 1.46505 * 109.46815 * 179.97438 * 5 3 2 7 7 C 1.34776 * 119.99604 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00214 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00208 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47238 * 180.02562 * 9 7 6 11 11 C 1.37638 * 120.12519 * 264.99566 * 10 9 7 12 12 C 1.38613 * 120.24858 * 179.97438 * 11 10 9 13 13 C 1.38654 * 120.49940 * 0.02713 * 12 11 10 14 14 C 1.37599 * 120.24840 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.12847 * 84.72679 * 10 9 7 16 16 C 1.41401 * 120.24686 * 359.97438 * 15 10 9 17 17 H 1.07997 * 119.99699 * 334.86271 * 16 15 10 18 18 C 1.39942 * 120.00085 * 154.86403 * 16 15 10 19 19 N 1.30823 * 119.99773 * 343.55585 * 18 16 15 20 20 Si 1.86798 * 120.00047 * 163.55562 * 18 16 15 21 21 H 1.48503 * 109.46955 * 59.99705 * 20 18 16 22 22 H 1.48496 * 109.47621 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47227 * 300.00333 * 20 18 16 24 24 O 1.42901 * 109.47432 * 66.26752 * 3 2 1 25 25 C 1.42897 * 113.99960 * 253.57927 * 24 3 2 26 26 H 1.08999 * 109.47205 * 61.19131 * 1 2 3 27 27 H 1.09001 * 109.46771 * 181.19312 * 1 2 3 28 28 H 1.08997 * 109.47053 * 301.19256 * 1 2 3 29 29 H 1.09002 * 109.47317 * 240.00150 * 2 1 3 30 30 H 1.08998 * 109.47344 * 120.00027 * 2 1 3 31 31 H 1.08994 * 109.47089 * 299.99601 * 5 3 2 32 32 H 1.09001 * 109.46987 * 59.99681 * 5 3 2 33 33 H 0.97001 * 120.00407 * 0.02562 * 6 5 3 34 34 H 1.09003 * 109.46593 * 300.00241 * 9 7 6 35 35 H 1.08999 * 109.46846 * 59.99413 * 9 7 6 36 36 H 1.08001 * 119.87727 * 0.02562 * 11 10 9 37 37 H 1.07995 * 119.74955 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.87408 * 180.02562 * 13 12 11 39 39 H 1.08008 * 120.12325 * 179.97438 * 14 13 12 40 40 H 0.97007 * 119.99324 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.46388 * 175.02108 * 25 24 3 42 42 H 1.08999 * 109.47142 * 55.03357 * 25 24 3 43 43 H 1.08993 * 109.47798 * 295.02349 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5879 1.9877 -0.8286 5 6 3.5619 1.4454 -0.1576 6 7 4.0501 2.8267 -0.1582 7 6 5.3686 3.0753 -0.2853 8 8 6.1509 2.1556 -0.3996 9 6 5.8710 4.4961 -0.2853 10 6 7.3700 4.4989 -0.4406 11 6 8.1795 4.5608 0.6708 12 6 9.5586 4.5630 0.5309 13 6 10.1384 4.5036 -0.7272 14 6 9.3485 4.4423 -1.8522 15 6 7.9473 4.4326 -1.7219 16 6 7.1257 4.3624 -2.8706 17 1 6.1261 3.9606 -2.7957 18 6 7.6079 4.8135 -4.1044 19 7 8.6654 5.5823 -4.1519 20 14 6.7417 4.3180 -5.6835 21 1 5.3372 4.7991 -5.6496 22 1 7.4436 4.9227 -6.8440 23 1 6.7552 2.8386 -5.8122 24 8 1.6876 2.0724 1.2333 25 6 0.6261 3.0222 1.1184 26 1 -0.3633 0.4952 -0.9005 27 1 -0.3633 -1.0275 0.0214 28 1 -0.3633 0.5322 0.8791 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0140 0.9003 0.6710 32 1 3.8307 0.9649 -1.0983 33 1 3.4245 3.5623 -0.0664 34 1 5.4191 5.0411 -1.1141 35 1 5.6018 4.9767 0.6553 36 1 7.7386 4.6070 1.6556 37 1 10.1861 4.6123 1.4084 38 1 11.2140 4.5055 -0.8244 39 1 9.8023 4.3965 -2.8313 40 1 8.9998 5.8947 -5.0073 41 1 0.3591 3.3901 2.1090 42 1 -0.2410 2.5445 0.6623 43 1 0.9506 3.8562 0.4963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810971310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -81.201136 kcal Electronic energy + Delta-G solvation = -23187.854495 eV Core-core repulsion = 19811.177389 eV Total energy + Delta-G solvation = -3376.677106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.45449 -38.48148 -37.18796 -34.37499 -33.57635 -33.26229 -31.64833 -29.43384 -29.15907 -26.97523 -26.11015 -24.93390 -23.30251 -21.41838 -20.87226 -20.37242 -19.21378 -17.16976 -17.12378 -16.53966 -15.89945 -15.45798 -15.35134 -14.72630 -14.59517 -14.33827 -13.95875 -13.59657 -13.48818 -13.33044 -12.99659 -12.59077 -12.48271 -12.39438 -11.99383 -11.64728 -11.55186 -11.51367 -11.26532 -11.10956 -10.97363 -10.93299 -10.84914 -10.64297 -10.36117 -9.77323 -9.43130 -9.31836 -9.11415 -9.06030 -8.62263 -7.25015 -7.23483 -6.68673 -4.28991 2.84161 3.03383 3.08037 3.11362 3.32477 3.42688 3.55401 3.70920 3.96532 4.59809 4.70680 4.75782 4.79714 5.04078 5.07826 5.17251 5.33471 5.44373 5.49397 5.58153 5.69732 5.70479 5.83607 5.84816 5.94061 6.03459 6.10334 6.24059 6.35617 6.49300 6.57763 6.84393 6.87133 6.99946 7.13305 7.36498 7.48976 7.70063 7.95657 8.03602 8.13925 8.19609 8.37478 8.70582 8.95138 8.97395 9.07744 10.24940 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.004344 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.488071 B = 6443.552109 C = 7694.220853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C 0.078 3.922 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.741 5.741 7 C 0.514 3.486 8 O -0.522 6.522 9 C -0.071 4.071 10 C -0.180 4.180 11 C -0.081 4.081 12 C -0.240 4.240 13 C -0.108 4.108 14 C -0.161 4.161 15 C 0.128 3.872 16 C -0.456 4.456 17 H 0.073 0.927 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.903 3.097 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.264 1.264 24 O -0.378 6.378 25 C 0.026 3.974 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.394 0.606 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.279 0.721 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 -4.273 4.825 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.020 3.980 4 H 0.087 0.913 5 C -0.006 4.006 6 N -0.395 5.395 7 C 0.302 3.698 8 O -0.396 6.396 9 C -0.110 4.110 10 C -0.182 4.182 11 C -0.100 4.100 12 C -0.259 4.259 13 C -0.126 4.126 14 C -0.180 4.180 15 C 0.126 3.874 16 C -0.486 4.486 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.421 5.421 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.189 1.189 24 O -0.296 6.296 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.227 0.773 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.974 -4.862 4.732 16.440 hybrid contribution -0.842 0.232 -0.948 1.289 sum -15.816 -4.630 3.784 16.908 Atomic orbital electron populations 1.21794 0.95517 1.01955 1.01722 1.21884 0.96419 0.95982 1.03365 1.22478 0.94550 0.94014 0.87007 0.91334 1.21464 0.91650 0.85052 1.02467 1.45995 1.08448 1.07602 1.77478 1.21219 0.80880 0.92793 0.74916 1.90678 1.55129 1.46674 1.47114 1.20261 0.96226 0.92150 1.02404 1.19054 0.91180 1.14085 0.93852 1.20305 0.93612 1.00256 0.95805 1.20302 0.94117 1.15714 0.95786 1.20675 0.97334 1.01203 0.93397 1.21324 0.93749 1.05649 0.97289 1.17328 0.92064 0.86980 0.91018 1.19440 1.00808 1.36324 0.92007 0.90876 1.25873 0.94621 0.92686 1.00858 1.69819 1.20739 1.23762 1.27820 0.86453 0.80094 0.80155 0.80496 1.19167 1.20348 1.18912 1.87973 1.53770 1.56972 1.30929 1.22908 0.89812 0.91676 1.02640 0.92932 0.92452 0.92301 0.90552 0.90665 0.91177 0.90651 0.77272 0.88713 0.90654 0.89768 0.89701 0.89622 0.86395 0.90965 0.89716 0.93882 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.21 37.16 0.34 -0.80 16 2 C -0.14 -1.23 5.63 -26.73 -0.15 -1.38 16 3 C 0.08 0.81 2.32 -26.73 -0.06 0.74 16 4 H 0.07 0.64 7.65 -51.93 -0.40 0.24 16 5 C 0.12 1.62 5.37 -4.04 -0.02 1.60 16 6 N -0.74 -11.40 5.45 -60.29 -0.33 -11.72 16 7 C 0.51 10.40 7.45 -10.99 -0.08 10.32 16 8 O -0.52 -12.93 16.03 5.55 0.09 -12.84 16 9 C -0.07 -1.43 5.18 -29.03 -0.15 -1.58 16 10 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 11 C -0.08 -1.94 9.66 -39.66 -0.38 -2.33 16 12 C -0.24 -5.74 10.05 -39.29 -0.39 -6.14 16 13 C -0.11 -2.69 10.02 -39.66 -0.40 -3.09 16 14 C -0.16 -4.39 8.69 -38.87 -0.34 -4.73 16 15 C 0.13 3.51 5.57 -106.83 -0.60 2.91 16 16 C -0.46 -12.18 8.17 -37.74 -0.31 -12.49 16 17 H 0.07 1.90 6.64 -52.49 -0.35 1.55 16 18 C 0.08 1.95 5.17 -17.34 -0.09 1.86 16 19 N -0.80 -20.77 10.90 55.55 0.61 -20.16 16 20 Si 0.90 19.03 29.59 -169.99 -5.03 14.00 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 24 O -0.38 -4.14 9.78 -35.23 -0.34 -4.48 16 25 C 0.03 0.21 10.35 101.05 1.05 1.25 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.45 6.58 -51.93 -0.34 0.11 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.39 4.96 8.35 -40.82 -0.34 4.62 16 34 H 0.09 1.86 7.06 -51.93 -0.37 1.50 16 35 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 36 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 3.30 6.14 -52.48 -0.32 2.97 16 40 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.04 0.29 6.53 -51.93 -0.34 -0.05 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -31.75 354.95 -8.36 -40.11 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.66 Total: 8.50 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.05 Total: -18.75 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.28 Total: -31.89 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.26 Total: -17.33 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.75 -8.36 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810971310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.091 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds