Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 H 1.09006 * 109.47216 * 306.26858 * 3 2 1 5 5 C 1.53006 * 109.47064 * 186.27076 * 3 2 1 6 6 N 1.46505 * 109.46815 * 179.97438 * 5 3 2 7 7 C 1.34776 * 119.99604 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00214 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00208 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47238 * 180.02562 * 9 7 6 11 11 C 1.37638 * 120.12519 * 264.99566 * 10 9 7 12 12 C 1.38613 * 120.24858 * 179.97438 * 11 10 9 13 13 C 1.38654 * 120.49940 * 0.02713 * 12 11 10 14 14 C 1.37599 * 120.24840 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.12847 * 84.72679 * 10 9 7 16 16 C 1.41401 * 120.24686 * 359.97438 * 15 10 9 17 17 H 1.07997 * 119.99699 * 334.86271 * 16 15 10 18 18 C 1.39942 * 120.00085 * 154.86403 * 16 15 10 19 19 N 1.30823 * 119.99773 * 343.55585 * 18 16 15 20 20 Si 1.86798 * 120.00047 * 163.55562 * 18 16 15 21 21 H 1.48503 * 109.46955 * 59.99705 * 20 18 16 22 22 H 1.48496 * 109.47621 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47227 * 300.00333 * 20 18 16 24 24 O 1.42901 * 109.47432 * 66.26752 * 3 2 1 25 25 C 1.42897 * 113.99960 * 253.57927 * 24 3 2 26 26 H 1.08999 * 109.47205 * 61.19131 * 1 2 3 27 27 H 1.09001 * 109.46771 * 181.19312 * 1 2 3 28 28 H 1.08997 * 109.47053 * 301.19256 * 1 2 3 29 29 H 1.09002 * 109.47317 * 240.00150 * 2 1 3 30 30 H 1.08998 * 109.47344 * 120.00027 * 2 1 3 31 31 H 1.08994 * 109.47089 * 299.99601 * 5 3 2 32 32 H 1.09001 * 109.46987 * 59.99681 * 5 3 2 33 33 H 0.97001 * 120.00407 * 0.02562 * 6 5 3 34 34 H 1.09003 * 109.46593 * 300.00241 * 9 7 6 35 35 H 1.08999 * 109.46846 * 59.99413 * 9 7 6 36 36 H 1.08001 * 119.87727 * 0.02562 * 11 10 9 37 37 H 1.07995 * 119.74955 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.87408 * 180.02562 * 13 12 11 39 39 H 1.08008 * 120.12325 * 179.97438 * 14 13 12 40 40 H 0.97007 * 119.99324 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.46388 * 175.02108 * 25 24 3 42 42 H 1.08999 * 109.47142 * 55.03357 * 25 24 3 43 43 H 1.08993 * 109.47798 * 295.02349 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5879 1.9877 -0.8286 5 6 3.5619 1.4454 -0.1576 6 7 4.0501 2.8267 -0.1582 7 6 5.3686 3.0753 -0.2853 8 8 6.1509 2.1556 -0.3996 9 6 5.8710 4.4961 -0.2853 10 6 7.3700 4.4989 -0.4406 11 6 8.1795 4.5608 0.6708 12 6 9.5586 4.5630 0.5309 13 6 10.1384 4.5036 -0.7272 14 6 9.3485 4.4423 -1.8522 15 6 7.9473 4.4326 -1.7219 16 6 7.1257 4.3624 -2.8706 17 1 6.1261 3.9606 -2.7957 18 6 7.6079 4.8135 -4.1044 19 7 8.6654 5.5823 -4.1519 20 14 6.7417 4.3180 -5.6835 21 1 5.3372 4.7991 -5.6496 22 1 7.4436 4.9227 -6.8440 23 1 6.7552 2.8386 -5.8122 24 8 1.6876 2.0724 1.2333 25 6 0.6261 3.0222 1.1184 26 1 -0.3633 0.4952 -0.9005 27 1 -0.3633 -1.0275 0.0214 28 1 -0.3633 0.5322 0.8791 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0140 0.9003 0.6710 32 1 3.8307 0.9649 -1.0983 33 1 3.4245 3.5623 -0.0664 34 1 5.4191 5.0411 -1.1141 35 1 5.6018 4.9767 0.6553 36 1 7.7386 4.6070 1.6556 37 1 10.1861 4.6123 1.4084 38 1 11.2140 4.5055 -0.8244 39 1 9.8023 4.3965 -2.8313 40 1 8.9998 5.8947 -5.0073 41 1 0.3591 3.3901 2.1090 42 1 -0.2410 2.5445 0.6623 43 1 0.9506 3.8562 0.4963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810971310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -100.949111 kcal Electronic energy + Delta-G solvation = -23188.710832 eV Core-core repulsion = 19811.177389 eV Total energy + Delta-G solvation = -3377.533443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86376 -39.62955 -38.91529 -35.59586 -35.49109 -34.17902 -33.39100 -31.33792 -30.27375 -28.38924 -27.17713 -26.66575 -24.28370 -22.80994 -22.30553 -21.97867 -20.85312 -19.06574 -18.04295 -17.85134 -17.36389 -17.02482 -16.35194 -16.22488 -16.15926 -15.52844 -15.26317 -15.19181 -14.73882 -14.42144 -14.34972 -14.08205 -13.83842 -13.52632 -13.35523 -13.12287 -12.90229 -12.74704 -12.68132 -12.60178 -12.47438 -12.20889 -12.10809 -11.99568 -11.62187 -11.31975 -11.20268 -11.01447 -10.83767 -10.43180 -10.01073 -9.22240 -9.15411 -8.58156 -6.28203 1.00920 1.14678 1.35973 1.46563 1.55353 1.85300 2.20467 2.36290 2.79279 2.80398 3.75051 3.76821 3.97075 4.05674 4.16804 4.36879 4.40849 4.45564 4.50286 4.56200 4.61458 4.65040 4.67707 4.73291 4.78770 4.81751 4.89609 4.97008 5.07875 5.11113 5.19754 5.20598 5.38656 5.39429 5.54547 5.56607 5.78414 6.05125 6.17976 6.22658 6.26776 6.43148 6.66139 6.75970 7.00364 7.12622 7.45300 8.37721 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.004344 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.488071 B = 6443.552109 C = 7694.220853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.088 3.912 4 H 0.085 0.915 5 C 0.115 3.885 6 N -0.720 5.720 7 C 0.516 3.484 8 O -0.576 6.576 9 C -0.069 4.069 10 C -0.188 4.188 11 C -0.093 4.093 12 C -0.244 4.244 13 C -0.118 4.118 14 C -0.196 4.196 15 C 0.096 3.904 16 C -0.483 4.483 17 H 0.072 0.928 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.972 3.028 21 H -0.252 1.252 22 H -0.267 1.267 23 H -0.271 1.271 24 O -0.398 6.398 25 C 0.019 3.981 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.411 0.589 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.286 0.714 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.201 -4.055 5.190 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.029 3.971 4 H 0.102 0.898 5 C -0.009 4.009 6 N -0.374 5.374 7 C 0.304 3.696 8 O -0.455 6.455 9 C -0.109 4.109 10 C -0.190 4.190 11 C -0.111 4.111 12 C -0.263 4.263 13 C -0.136 4.136 14 C -0.215 4.215 15 C 0.094 3.906 16 C -0.512 4.512 17 H 0.090 0.910 18 C -0.179 4.179 19 N -0.452 5.452 20 Si 0.793 3.207 21 H -0.176 1.176 22 H -0.191 1.191 23 H -0.196 1.196 24 O -0.317 6.317 25 C -0.077 4.077 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.417 -4.613 5.120 18.731 hybrid contribution -0.096 0.182 -0.936 0.959 sum -17.513 -4.431 4.184 18.543 Atomic orbital electron populations 1.21763 0.94045 1.02643 1.02119 1.21884 0.97635 0.94875 1.03217 1.22378 0.91826 0.95271 0.87581 0.89753 1.21593 0.94233 0.83597 1.01472 1.45777 1.07156 1.09126 1.75292 1.21156 0.81974 0.92094 0.74425 1.90659 1.56825 1.47956 1.50028 1.20275 0.93588 0.92657 1.04335 1.19537 0.93832 1.12384 0.93239 1.20740 0.93809 0.99508 0.97031 1.20708 0.94878 1.14447 0.96274 1.20951 0.98375 1.00821 0.93437 1.21349 0.94552 1.08333 0.97310 1.17733 0.92363 0.87925 0.92614 1.19614 1.01028 1.37557 0.93038 0.90991 1.26687 0.95297 0.92104 1.03781 1.69884 1.21968 1.24402 1.28960 0.85405 0.79673 0.79152 0.76434 1.17581 1.19112 1.19594 1.87949 1.54921 1.57725 1.31101 1.23110 0.89498 0.91425 1.03675 0.92035 0.91678 0.92359 0.90100 0.91542 0.92783 0.91394 0.75333 0.88368 0.87162 0.86727 0.86746 0.87674 0.88293 0.90346 0.88767 0.92501 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.21 71.98 0.66 -1.19 16 2 C -0.14 -2.23 5.63 30.59 0.17 -2.06 16 3 C 0.09 1.65 2.32 30.60 0.07 1.72 16 4 H 0.08 1.34 7.65 -2.38 -0.02 1.32 16 5 C 0.12 3.09 5.37 86.38 0.46 3.55 16 6 N -0.72 -21.20 5.45 -463.04 -2.52 -23.72 16 7 C 0.52 20.58 7.45 87.66 0.65 21.24 16 8 O -0.58 -29.00 16.03 -3.04 -0.05 -29.05 16 9 C -0.07 -2.71 5.18 29.10 0.15 -2.56 16 10 C -0.19 -9.29 4.43 -19.41 -0.09 -9.38 16 11 C -0.09 -4.32 9.66 22.22 0.21 -4.10 16 12 C -0.24 -11.45 10.05 22.46 0.23 -11.22 16 13 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 14 C -0.20 -11.08 8.69 22.73 0.20 -10.88 16 15 C 0.10 5.37 5.57 -21.29 -0.12 5.25 16 16 C -0.48 -26.39 8.17 23.46 0.19 -26.19 16 17 H 0.07 3.80 6.64 -2.91 -0.02 3.78 16 18 C 0.04 1.84 5.17 85.26 0.44 2.28 16 19 N -0.83 -44.20 10.90 21.83 0.24 -43.96 16 20 Si 0.97 39.16 29.59 68.60 2.03 41.19 16 21 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 22 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 O -0.40 -7.86 9.78 -148.98 -1.46 -9.32 16 25 C 0.02 0.24 10.35 113.37 1.17 1.42 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.74 6.58 -2.39 -0.02 0.73 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.41 9.38 8.35 -92.71 -0.77 8.61 16 34 H 0.10 3.78 7.06 -2.39 -0.02 3.76 16 35 H 0.11 3.49 8.05 -2.39 -0.02 3.47 16 36 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 37 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.10 5.83 6.14 -2.91 -0.02 5.81 16 40 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 0.58 6.53 -2.39 -0.02 0.57 16 43 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -70.63 354.95 3.10 -67.52 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.23 Total: 35.21 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 4.63 Total: -37.87 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -2.28 Total: -67.68 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.51 Total: -38.37 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -70.63 3.10 -67.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810971310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.426 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds