Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00044 * 2 1 4 4 C 1.53005 * 109.46757 * 90.00190 * 3 2 1 5 5 C 1.52998 * 109.47174 * 59.99959 * 4 3 2 6 6 O 1.42898 * 109.47168 * 299.99789 * 4 3 2 7 7 C 1.50706 * 109.46728 * 179.97438 * 4 3 2 8 8 C 1.38233 * 120.00109 * 329.72369 * 7 4 3 9 9 C 1.38238 * 119.99749 * 179.78525 * 8 7 4 10 10 C 1.38234 * 120.00078 * 0.44989 * 9 8 7 11 11 C 1.38238 * 120.00032 * 359.80374 * 10 9 8 12 12 C 1.38235 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.34780 * 119.99610 * 180.02562 * 2 1 3 14 14 O 1.21287 * 119.99756 * 180.02562 * 13 2 1 15 15 C 1.50696 * 120.00183 * 359.97438 * 13 2 1 16 16 C 1.53008 * 109.47105 * 180.02562 * 15 13 2 17 17 C 1.50696 * 109.47105 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99909 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00024 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00061 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99906 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47127 * 89.99806 * 21 19 17 23 23 H 1.48499 * 109.47256 * 209.99807 * 21 19 17 24 24 H 1.48504 * 109.47191 * 329.99765 * 21 19 17 25 25 H 1.09008 * 109.47309 * 89.99895 * 1 2 3 26 26 H 1.09002 * 109.47236 * 209.99428 * 1 2 3 27 27 H 1.08999 * 109.47125 * 330.00180 * 1 2 3 28 28 H 1.09001 * 109.47408 * 330.00147 * 3 2 1 29 29 H 1.09001 * 109.46922 * 209.99818 * 3 2 1 30 30 H 1.08997 * 109.46785 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.47171 * 299.99740 * 5 4 3 32 32 H 1.09004 * 109.47223 * 60.00243 * 5 4 3 33 33 H 0.96705 * 113.99611 * 300.00224 * 6 4 3 34 34 H 1.08004 * 119.99934 * 0.02562 * 8 7 4 35 35 H 1.07999 * 119.99925 * 180.27297 * 9 8 7 36 36 H 1.08002 * 120.00276 * 179.83134 * 10 9 8 37 37 H 1.08000 * 120.00524 * 180.02562 * 11 10 9 38 38 H 1.07999 * 120.00181 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.47421 * 300.00175 * 15 13 2 40 40 H 1.09004 * 109.47053 * 60.00903 * 15 13 2 41 41 H 1.08999 * 109.46519 * 300.00597 * 16 15 13 42 42 H 1.09004 * 109.46786 * 60.00301 * 16 15 13 43 43 H 0.97000 * 119.99566 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 6 3.2793 0.6439 2.1638 6 8 1.2039 1.8811 2.1162 7 6 3.2066 3.0151 1.4426 8 6 4.0751 3.3115 0.4088 9 6 4.7634 4.5103 0.4066 10 6 4.5902 5.4086 1.4429 11 6 3.7256 5.1100 2.4793 12 6 3.0338 3.9132 2.4793 13 6 2.1388 -1.1673 -0.0005 14 8 3.3517 -1.1673 -0.0001 15 6 1.3853 -2.4723 -0.0005 16 6 2.3795 -3.6353 -0.0005 17 6 1.6260 -4.9404 -0.0012 18 1 0.5460 -4.9403 -0.0019 19 6 2.3153 -6.1344 -0.0018 20 7 1.6577 -7.2734 -0.0029 21 14 4.1833 -6.1345 -0.0012 22 1 4.6778 -6.1355 1.3990 23 1 4.6785 -7.3465 -0.7019 24 1 4.6786 -4.9215 -0.7002 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6084 2.0284 -0.5138 29 1 3.1499 1.1383 -0.5138 30 1 3.4613 0.9588 3.1913 31 1 2.7343 -0.3000 2.1637 32 1 4.2318 0.5136 1.6499 33 1 0.6268 2.5439 1.7126 34 1 4.2129 2.6081 -0.3991 35 1 5.4386 4.7438 -0.4033 36 1 5.1300 6.3441 1.4426 37 1 3.5899 5.8119 3.2888 38 1 2.3587 3.6796 3.2892 39 1 0.7589 -2.5303 0.8896 40 1 0.7584 -2.5299 -0.8904 41 1 3.0062 -3.5775 -0.8905 42 1 3.0061 -3.5776 0.8895 43 1 2.1428 -8.1134 -0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819711860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -63.032575 kcal Electronic energy + Delta-G solvation = -23517.923883 eV Core-core repulsion = 20142.034625 eV Total energy + Delta-G solvation = -3375.889258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50744 -39.22832 -37.29629 -34.92299 -33.54960 -32.74503 -31.27151 -31.09322 -29.56324 -27.67656 -26.57397 -25.25695 -23.30747 -22.64539 -21.10705 -20.25327 -18.78091 -17.79188 -17.11959 -16.76479 -16.09199 -15.95623 -15.51422 -15.15242 -14.73916 -14.45465 -14.06992 -14.03511 -13.61111 -13.18247 -13.00448 -12.90915 -12.54808 -12.50752 -12.37449 -12.17722 -12.02462 -11.89888 -11.58819 -11.38879 -11.24074 -11.00795 -10.90455 -10.41392 -10.11839 -10.00048 -9.76466 -9.21177 -9.16072 -9.13066 -9.01843 -8.49614 -8.37813 -6.01460 -3.99948 1.07082 1.16152 3.07478 3.20933 3.39052 3.45516 3.52514 3.56276 4.06788 4.41848 4.52323 4.61431 4.75389 4.76696 4.84577 4.92489 5.19593 5.23344 5.30086 5.34141 5.35980 5.48105 5.60202 5.65042 5.71229 5.78974 5.80474 5.91409 5.98429 6.09182 6.13741 6.21549 6.26922 6.30952 6.41824 6.63810 6.72219 6.75092 7.38302 7.45312 7.45690 7.62613 7.81308 8.51045 8.63821 9.01786 9.61758 11.11451 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.003466 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.475779 B = 8076.637806 C = 8573.509288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.618 5.618 3 C 0.093 3.907 4 C 0.160 3.840 5 C -0.126 4.126 6 O -0.545 6.545 7 C -0.111 4.111 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.123 4.123 12 C -0.103 4.103 13 C 0.511 3.489 14 O -0.537 6.537 15 C -0.120 4.120 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.370 0.630 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 27.166 1.895 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.353 5.353 3 C -0.031 4.031 4 C 0.118 3.882 5 C -0.183 4.183 6 O -0.351 6.351 7 C -0.112 4.112 8 C -0.130 4.130 9 C -0.138 4.138 10 C -0.140 4.140 11 C -0.141 4.141 12 C -0.121 4.121 13 C 0.302 3.698 14 O -0.413 6.413 15 C -0.160 4.160 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.217 0.783 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.089 26.476 2.270 26.595 hybrid contribution 0.644 0.435 -0.337 0.846 sum 1.732 26.911 1.933 27.035 Atomic orbital electron populations 1.21769 0.79398 1.03541 1.01227 1.47846 1.06944 1.05289 1.75219 1.22089 0.98883 0.86281 0.95848 1.20505 0.83724 0.91383 0.92631 1.21726 0.99469 0.97407 0.99668 1.86637 1.28415 1.63259 1.56740 1.20531 0.98875 0.96346 0.95421 1.21186 0.96361 0.97079 0.98347 1.21161 0.99677 0.94238 0.98761 1.21184 0.98699 0.99528 0.94591 1.21162 0.97165 0.97112 0.98652 1.21023 0.99530 0.93502 0.98022 1.21526 0.88421 0.85641 0.74215 1.90639 1.14336 1.87370 1.49002 1.21689 1.00231 0.90995 1.03102 1.19370 0.94432 0.92187 0.97572 1.21117 0.94962 0.88889 1.51216 0.90969 1.24971 0.98461 0.95457 0.94364 1.69915 1.35810 0.97416 1.51161 0.86798 0.86260 0.77767 0.78738 1.20247 1.21479 1.18537 0.93087 0.90392 0.91369 0.90677 0.88880 0.92648 0.91190 0.90430 0.78336 0.85590 0.85988 0.86219 0.86112 0.85416 0.89655 0.89737 0.95897 0.96321 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.98 59.85 0.60 1.48 16 2 N -0.62 -8.48 2.60 -181.57 -0.47 -8.96 16 3 C 0.09 1.09 4.06 -4.04 -0.02 1.07 16 4 C 0.16 1.85 0.99 -91.77 -0.09 1.75 16 5 C -0.13 -1.83 7.49 37.16 0.28 -1.55 16 6 O -0.55 -5.78 10.69 -35.23 -0.38 -6.16 16 7 C -0.11 -1.16 4.80 -104.62 -0.50 -1.67 16 8 C -0.11 -1.13 9.14 -39.58 -0.36 -1.49 16 9 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 10 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 11 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 12 C -0.10 -0.99 9.35 -39.58 -0.37 -1.36 16 13 C 0.51 9.30 6.08 -10.99 -0.07 9.24 16 14 O -0.54 -11.40 13.75 5.55 0.08 -11.32 16 15 C -0.12 -2.37 4.19 -27.88 -0.12 -2.49 16 16 C 0.00 0.06 3.33 -27.88 -0.09 -0.04 16 17 C -0.52 -15.08 9.66 -34.44 -0.33 -15.42 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 21 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 25 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16 27 H 0.07 0.56 6.88 -51.93 -0.36 0.20 16 28 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.09 1.22 5.79 -51.93 -0.30 0.92 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.19 6.15 -51.93 -0.32 0.87 16 32 H 0.08 1.20 7.73 -51.93 -0.40 0.80 16 33 H 0.37 2.56 8.78 45.56 0.40 2.97 16 34 H 0.13 1.23 6.17 -52.48 -0.32 0.91 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 1.17 7.48 -52.49 -0.39 0.78 16 39 H 0.09 1.58 7.40 -51.93 -0.38 1.20 16 40 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 41 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 42 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -34.33 344.36 -7.56 -41.89 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.72 Total: 1.55 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.37 Total: -12.85 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.30 Total: -36.37 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.30 Total: -17.48 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.33 -7.56 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819711860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.144 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds