Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00044 * 2 1 4 4 C 1.53005 * 109.46757 * 90.00190 * 3 2 1 5 5 C 1.52998 * 109.47174 * 59.99959 * 4 3 2 6 6 O 1.42898 * 109.47168 * 299.99789 * 4 3 2 7 7 C 1.50706 * 109.46728 * 179.97438 * 4 3 2 8 8 C 1.38233 * 120.00109 * 329.72369 * 7 4 3 9 9 C 1.38238 * 119.99749 * 179.78525 * 8 7 4 10 10 C 1.38234 * 120.00078 * 0.44989 * 9 8 7 11 11 C 1.38238 * 120.00032 * 359.80374 * 10 9 8 12 12 C 1.38235 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.34780 * 119.99610 * 180.02562 * 2 1 3 14 14 O 1.21287 * 119.99756 * 180.02562 * 13 2 1 15 15 C 1.50696 * 120.00183 * 359.97438 * 13 2 1 16 16 C 1.53008 * 109.47105 * 180.02562 * 15 13 2 17 17 C 1.50696 * 109.47105 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99909 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00024 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00061 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99906 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47127 * 89.99806 * 21 19 17 23 23 H 1.48499 * 109.47256 * 209.99807 * 21 19 17 24 24 H 1.48504 * 109.47191 * 329.99765 * 21 19 17 25 25 H 1.09008 * 109.47309 * 89.99895 * 1 2 3 26 26 H 1.09002 * 109.47236 * 209.99428 * 1 2 3 27 27 H 1.08999 * 109.47125 * 330.00180 * 1 2 3 28 28 H 1.09001 * 109.47408 * 330.00147 * 3 2 1 29 29 H 1.09001 * 109.46922 * 209.99818 * 3 2 1 30 30 H 1.08997 * 109.46785 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.47171 * 299.99740 * 5 4 3 32 32 H 1.09004 * 109.47223 * 60.00243 * 5 4 3 33 33 H 0.96705 * 113.99611 * 300.00224 * 6 4 3 34 34 H 1.08004 * 119.99934 * 0.02562 * 8 7 4 35 35 H 1.07999 * 119.99925 * 180.27297 * 9 8 7 36 36 H 1.08002 * 120.00276 * 179.83134 * 10 9 8 37 37 H 1.08000 * 120.00524 * 180.02562 * 11 10 9 38 38 H 1.07999 * 120.00181 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.47421 * 300.00175 * 15 13 2 40 40 H 1.09004 * 109.47053 * 60.00903 * 15 13 2 41 41 H 1.08999 * 109.46519 * 300.00597 * 16 15 13 42 42 H 1.09004 * 109.46786 * 60.00301 * 16 15 13 43 43 H 0.97000 * 119.99566 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 6 3.2793 0.6439 2.1638 6 8 1.2039 1.8811 2.1162 7 6 3.2066 3.0151 1.4426 8 6 4.0751 3.3115 0.4088 9 6 4.7634 4.5103 0.4066 10 6 4.5902 5.4086 1.4429 11 6 3.7256 5.1100 2.4793 12 6 3.0338 3.9132 2.4793 13 6 2.1388 -1.1673 -0.0005 14 8 3.3517 -1.1673 -0.0001 15 6 1.3853 -2.4723 -0.0005 16 6 2.3795 -3.6353 -0.0005 17 6 1.6260 -4.9404 -0.0012 18 1 0.5460 -4.9403 -0.0019 19 6 2.3153 -6.1344 -0.0018 20 7 1.6577 -7.2734 -0.0029 21 14 4.1833 -6.1345 -0.0012 22 1 4.6778 -6.1355 1.3990 23 1 4.6785 -7.3465 -0.7019 24 1 4.6786 -4.9215 -0.7002 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6084 2.0284 -0.5138 29 1 3.1499 1.1383 -0.5138 30 1 3.4613 0.9588 3.1913 31 1 2.7343 -0.3000 2.1637 32 1 4.2318 0.5136 1.6499 33 1 0.6268 2.5439 1.7126 34 1 4.2129 2.6081 -0.3991 35 1 5.4386 4.7438 -0.4033 36 1 5.1300 6.3441 1.4426 37 1 3.5899 5.8119 3.2888 38 1 2.3587 3.6796 3.2892 39 1 0.7589 -2.5303 0.8896 40 1 0.7584 -2.5299 -0.8904 41 1 3.0062 -3.5775 -0.8905 42 1 3.0061 -3.5776 0.8895 43 1 2.1428 -8.1134 -0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819711860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -85.824689 kcal Electronic energy + Delta-G solvation = -23518.912223 eV Core-core repulsion = 20142.034625 eV Total energy + Delta-G solvation = -3376.877598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51999 -40.27912 -38.21579 -36.07958 -35.57858 -33.77939 -33.11753 -31.78270 -30.45490 -28.98012 -27.90133 -26.65589 -24.22654 -23.49264 -22.71926 -21.22836 -20.11073 -19.16307 -18.56838 -17.70693 -17.55264 -16.93825 -16.63124 -16.26358 -16.01616 -15.71376 -15.36777 -15.07505 -14.76039 -14.38318 -14.34069 -14.13359 -13.91568 -13.62093 -13.43858 -13.38395 -13.17203 -13.06780 -12.88050 -12.69286 -12.53503 -12.12915 -11.99553 -11.96963 -11.78534 -11.73439 -11.39889 -11.28636 -10.78833 -10.64757 -9.83654 -9.77882 -9.44693 -8.32286 -6.35036 0.37486 0.48492 1.32264 1.33809 1.49089 1.68719 2.07245 2.34190 2.83554 3.03363 3.23904 3.55872 3.70506 3.80976 4.03563 4.10865 4.15556 4.28374 4.36437 4.36530 4.47130 4.54782 4.56643 4.64649 4.66084 4.76771 4.83333 4.87202 4.91426 5.06078 5.08699 5.15369 5.19973 5.32690 5.43915 5.52904 5.59816 5.60388 5.61552 5.67958 6.08882 6.22795 6.39118 6.71088 6.80831 7.26478 7.30262 8.83511 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.003466 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.475779 B = 8076.637806 C = 8573.509288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.607 5.607 3 C 0.092 3.908 4 C 0.173 3.827 5 C -0.122 4.122 6 O -0.553 6.553 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.127 4.127 10 C -0.123 4.123 11 C -0.126 4.126 12 C -0.110 4.110 13 C 0.511 3.489 14 O -0.576 6.576 15 C -0.114 4.114 16 C 0.008 3.992 17 C -0.529 4.529 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.943 5.943 21 Si 0.938 3.062 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.261 1.261 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.389 0.611 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.010 0.990 42 H 0.006 0.994 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 30.106 1.896 30.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C -0.031 4.031 4 C 0.131 3.869 5 C -0.180 4.180 6 O -0.360 6.360 7 C -0.122 4.122 8 C -0.143 4.143 9 C -0.145 4.145 10 C -0.141 4.141 11 C -0.144 4.144 12 C -0.128 4.128 13 C 0.301 3.699 14 O -0.456 6.456 15 C -0.154 4.154 16 C -0.030 4.030 17 C -0.567 4.567 18 H 0.067 0.933 19 C -0.184 4.184 20 N -0.584 5.584 21 Si 0.763 3.237 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.185 1.185 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.238 0.762 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.028 0.972 42 H 0.025 0.975 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.094 29.463 2.267 29.570 hybrid contribution 0.529 -0.398 -0.312 0.732 sum 1.624 29.065 1.955 29.176 Atomic orbital electron populations 1.22054 0.77109 1.04713 1.02809 1.47785 1.08355 1.04674 1.73113 1.22263 0.98704 0.85765 0.96386 1.20151 0.83994 0.91097 0.91705 1.21623 0.98988 0.97278 1.00076 1.86593 1.28260 1.64197 1.56981 1.20394 0.99540 0.95955 0.96269 1.21276 0.96843 0.97741 0.98455 1.21426 0.99633 0.93847 0.99563 1.21524 0.98322 1.00229 0.93977 1.21461 0.96612 0.96996 0.99297 1.21128 0.99945 0.93891 0.97808 1.21120 0.87783 0.86436 0.74585 1.90623 1.15742 1.87980 1.51257 1.21494 0.99192 0.90426 1.04292 1.19198 0.94916 0.92647 0.96205 1.21429 0.94291 0.90660 1.50297 0.93262 1.25798 1.03097 0.95225 0.94259 1.70024 1.37710 0.98145 1.52530 0.85833 0.80797 0.78004 0.79113 1.19475 1.20230 1.18531 0.91237 0.91116 0.88424 0.87174 0.90397 0.92484 0.93991 0.92121 0.76167 0.85955 0.84344 0.83846 0.83992 0.85172 0.88711 0.88388 0.97167 0.97542 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.38 9.98 127.77 1.28 2.65 16 2 N -0.61 -15.79 2.60 -846.74 -2.20 -17.98 16 3 C 0.09 2.01 4.06 86.38 0.35 2.36 16 4 C 0.17 3.78 0.99 -11.54 -0.01 3.77 16 5 C -0.12 -3.62 7.49 71.98 0.54 -3.08 16 6 O -0.55 -10.48 10.69 -148.98 -1.59 -12.07 16 7 C -0.12 -2.35 4.80 -19.86 -0.10 -2.45 16 8 C -0.13 -2.36 9.14 22.27 0.20 -2.16 16 9 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 10 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 11 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 12 C -0.11 -1.90 9.35 22.27 0.21 -1.69 16 13 C 0.51 18.53 6.08 87.66 0.53 19.07 16 14 O -0.58 -24.93 13.75 -3.05 -0.04 -24.97 16 15 C -0.11 -4.51 4.19 29.85 0.13 -4.38 16 16 C 0.01 0.42 3.33 29.85 0.10 0.52 16 17 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 18 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 19 C 0.01 0.84 5.47 84.65 0.46 1.30 16 20 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 21 Si 0.94 47.47 27.47 68.60 1.88 49.36 16 22 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.26 -13.12 6.54 99.48 0.65 -12.47 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.07 1.44 6.44 -2.39 -0.02 1.42 16 27 H 0.10 1.24 6.88 -2.39 -0.02 1.23 16 28 H 0.11 1.65 8.07 -2.39 -0.02 1.63 16 29 H 0.08 2.00 5.79 -2.39 -0.01 1.99 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.45 6.15 -2.39 -0.01 1.44 16 32 H 0.06 1.96 7.73 -2.38 -0.02 1.94 16 33 H 0.39 4.10 8.78 -74.05 -0.65 3.45 16 34 H 0.12 2.33 6.17 -2.91 -0.02 2.31 16 35 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.13 2.13 7.48 -2.91 -0.02 2.11 16 39 H 0.09 3.51 7.40 -2.39 -0.02 3.50 16 40 H 0.10 3.55 8.11 -2.38 -0.02 3.53 16 41 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 42 H 0.01 0.33 7.53 -2.38 -0.02 0.31 16 43 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -75.54 344.36 3.26 -72.28 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.30 Total: 12.56 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.61 Total: -19.72 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -1.90 Total: -77.43 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.63 Total: -37.04 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.88 Total: 49.36 kcal Total: -75.54 3.26 -72.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819711860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.548 kcal (2) G-P(sol) polarization free energy of solvation -75.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds