Wall clock time and date at job start Tue Mar 31 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 120.00053 * 2 1 4 4 C 1.52997 * 109.47127 * 89.99427 * 3 2 1 5 5 C 1.53001 * 109.47353 * 304.99645 * 4 3 2 6 6 O 1.42894 * 109.47499 * 65.00086 * 4 3 2 7 7 C 1.50706 * 109.46831 * 185.00335 * 4 3 2 8 8 C 1.38237 * 119.99744 * 210.00383 * 7 4 3 9 9 C 1.38235 * 119.99712 * 180.02562 * 8 7 4 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00223 * 30.01594 * 7 4 3 13 13 C 1.34779 * 119.99924 * 179.97438 * 2 1 3 14 14 O 1.21281 * 119.99984 * 180.02562 * 13 2 1 15 15 C 1.50698 * 119.99912 * 0.02562 * 13 2 1 16 16 C 1.53001 * 109.47001 * 179.97438 * 15 13 2 17 17 C 1.50698 * 109.47322 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99595 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00310 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00102 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99866 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47009 * 90.00484 * 21 19 17 23 23 H 1.48500 * 109.46881 * 210.00470 * 21 19 17 24 24 H 1.48494 * 109.47145 * 329.99981 * 21 19 17 25 25 H 1.08997 * 109.46627 * 90.00363 * 1 2 3 26 26 H 1.09001 * 109.47223 * 210.00162 * 1 2 3 27 27 H 1.08996 * 109.47484 * 330.00689 * 1 2 3 28 28 H 1.09007 * 109.46653 * 329.99521 * 3 2 1 29 29 H 1.08997 * 109.46689 * 209.99488 * 3 2 1 30 30 H 1.08993 * 109.47154 * 300.00362 * 5 4 3 31 31 H 1.09001 * 109.46664 * 60.00290 * 5 4 3 32 32 H 1.08998 * 109.47218 * 179.97438 * 5 4 3 33 33 H 0.96705 * 113.99982 * 59.99764 * 6 4 3 34 34 H 1.08005 * 120.00088 * 359.97438 * 8 7 4 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07998 * 119.99975 * 0.02562 * 12 7 4 39 39 H 1.09004 * 109.47506 * 299.99697 * 15 13 2 40 40 H 1.08997 * 109.47133 * 59.99924 * 15 13 2 41 41 H 1.09001 * 109.47218 * 299.99844 * 16 15 13 42 42 H 1.08997 * 109.47050 * 60.00104 * 16 15 13 43 43 H 0.97001 * 119.99994 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 6 1.1240 1.7731 2.1990 6 8 3.3208 0.7727 2.0815 7 6 3.0961 3.0732 1.4442 8 6 3.9591 3.4286 2.4640 9 6 4.5490 4.6787 2.4658 10 6 4.2770 5.5730 1.4474 11 6 3.4103 5.2193 0.4302 12 6 2.8234 3.9677 0.4262 13 6 2.1389 -1.1672 0.0005 14 8 3.3517 -1.1672 0.0010 15 6 1.3854 -2.4723 0.0005 16 6 2.3796 -3.6352 0.0005 17 6 1.6262 -4.9403 -0.0001 18 1 0.5461 -4.9403 -0.0001 19 6 2.3155 -6.1344 0.0003 20 7 1.6579 -7.2733 0.0003 21 14 4.1836 -6.1344 0.0009 22 1 4.6781 -6.1343 1.4012 23 1 4.6788 -7.3469 -0.6988 24 1 4.6788 -4.9220 -0.6991 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6084 2.0284 -0.5140 29 1 3.1500 1.1383 -0.5138 30 1 0.4617 2.4885 1.7116 31 1 0.6585 0.7875 2.1977 32 1 1.3057 2.0874 3.2268 33 1 4.1836 0.6812 1.6544 34 1 4.1716 2.7299 3.2597 35 1 5.2229 4.9566 3.2627 36 1 4.7383 6.5495 1.4487 37 1 3.1943 5.9195 -0.3631 38 1 2.1488 3.6902 -0.3702 39 1 0.7584 -2.5299 0.8903 40 1 0.7591 -2.5302 -0.8897 41 1 3.0063 -3.5775 -0.8895 42 1 3.0063 -3.5775 0.8905 43 1 2.1429 -8.1134 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819711862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:39 Heat of formation + Delta-G solvation = -61.563960 kcal Electronic energy + Delta-G solvation = -23492.773451 eV Core-core repulsion = 20116.947876 eV Total energy + Delta-G solvation = -3375.825574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.44878 -39.18378 -37.18014 -35.07290 -33.47286 -32.53239 -31.26284 -31.09687 -29.52286 -28.16005 -26.50138 -25.02888 -23.40690 -22.61880 -21.10631 -20.21993 -18.66665 -17.79396 -17.16130 -16.71957 -16.09221 -15.89995 -15.55387 -15.01622 -14.64169 -14.50210 -14.11539 -13.98464 -13.63999 -13.32858 -12.98705 -12.88698 -12.69850 -12.50854 -12.39737 -12.28083 -11.97043 -11.89897 -11.59759 -11.34462 -11.29117 -10.96875 -10.90638 -10.26741 -10.09178 -9.97938 -9.74564 -9.18509 -9.16748 -9.09742 -9.03479 -8.48019 -8.36896 -6.00051 -3.98372 1.06624 1.15241 3.13536 3.24661 3.40693 3.46865 3.52292 3.57999 4.16662 4.42424 4.53950 4.62996 4.71383 4.75320 4.84572 4.91977 5.13809 5.20337 5.23263 5.33825 5.35666 5.40199 5.47584 5.63579 5.66500 5.70486 5.74214 5.80466 5.83826 6.05823 6.11679 6.15935 6.19904 6.26384 6.34108 6.64250 6.73568 6.75549 7.41706 7.48493 7.64398 7.72964 7.83487 8.53293 8.69651 9.03177 9.63351 11.12861 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027986 B = 0.003434 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.274287 B = 8151.632763 C = 8652.962255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.621 5.621 3 C 0.092 3.908 4 C 0.157 3.843 5 C -0.135 4.135 6 O -0.541 6.541 7 C -0.110 4.110 8 C -0.101 4.101 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.116 4.116 13 C 0.518 3.482 14 O -0.536 6.536 15 C -0.119 4.119 16 C 0.002 3.998 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.905 5.905 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.382 0.618 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.022 0.978 42 H 0.019 0.981 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 27.425 2.066 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.356 5.356 3 C -0.031 4.031 4 C 0.114 3.886 5 C -0.192 4.192 6 O -0.347 6.347 7 C -0.111 4.111 8 C -0.119 4.119 9 C -0.139 4.139 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.134 4.134 13 C 0.308 3.692 14 O -0.412 6.412 15 C -0.159 4.159 16 C -0.035 4.035 17 C -0.561 4.561 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.544 5.544 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.186 1.186 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.194 27.137 2.452 27.248 hybrid contribution 1.311 0.110 -0.370 1.366 sum 1.117 27.247 2.082 27.349 Atomic orbital electron populations 1.21921 0.79766 1.03428 1.01771 1.47851 1.06633 1.05462 1.75646 1.22114 0.98819 0.86209 0.95998 1.20398 0.90843 0.84395 0.92933 1.21819 0.94144 1.02868 1.00333 1.86547 1.29654 1.62174 1.56311 1.20583 0.98334 0.96731 0.95467 1.21067 0.96169 0.96406 0.98268 1.21183 0.99989 0.93999 0.98741 1.21179 0.98467 0.99574 0.94837 1.21136 0.97552 0.96489 0.98748 1.21123 1.00301 0.93789 0.98152 1.21440 0.88331 0.85451 0.73944 1.90589 1.14477 1.87278 1.48819 1.21669 1.00204 0.91131 1.02917 1.19360 0.94450 0.92154 0.97577 1.21123 0.94941 0.88923 1.51144 0.91005 1.24971 0.98474 0.95453 0.94370 1.69917 1.35803 0.97407 1.51248 0.86788 0.86253 0.77715 0.78742 1.20239 1.21514 1.18559 0.92809 0.90261 0.91281 0.90114 0.89624 0.91437 0.90713 0.91983 0.76991 0.85314 0.86068 0.86226 0.86061 0.85810 0.89753 0.89882 0.95970 0.96233 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.02 59.85 0.54 1.30 16 2 N -0.62 -8.52 2.46 -181.57 -0.45 -8.97 16 3 C 0.09 1.09 4.19 -4.04 -0.02 1.07 16 4 C 0.16 1.80 1.01 -91.77 -0.09 1.71 16 5 C -0.13 -1.40 7.45 37.16 0.28 -1.13 16 6 O -0.54 -7.79 10.83 -43.02 -0.47 -8.25 16 7 C -0.11 -1.14 4.81 -104.62 -0.50 -1.64 16 8 C -0.10 -1.04 9.35 -39.58 -0.37 -1.41 16 9 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 10 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 11 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 12 C -0.12 -1.04 9.14 -39.58 -0.36 -1.41 16 13 C 0.52 9.57 7.30 -10.99 -0.08 9.49 16 14 O -0.54 -11.58 14.54 -2.23 -0.03 -11.61 16 15 C -0.12 -2.38 4.19 -27.88 -0.12 -2.49 16 16 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 17 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 18 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 21 Si 0.88 22.90 27.47 -169.99 -4.67 18.23 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 27 H 0.07 0.54 6.03 -51.93 -0.31 0.23 16 28 H 0.08 0.72 6.14 -51.93 -0.32 0.40 16 29 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 30 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 31 H 0.07 0.85 6.12 -51.93 -0.32 0.53 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.38 5.25 8.74 45.56 0.40 5.65 16 34 H 0.13 1.34 7.49 -52.48 -0.39 0.95 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.92 6.05 -52.49 -0.32 0.60 16 39 H 0.08 1.58 7.40 -51.93 -0.38 1.19 16 40 H 0.08 1.54 8.11 -51.93 -0.42 1.11 16 41 H 0.02 0.58 7.16 -51.93 -0.37 0.21 16 42 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -34.74 344.28 -7.75 -42.49 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.66 Total: 2.82 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.44 Total: -12.36 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.33 Total: -36.51 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.50 Total: -19.86 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.74 -7.75 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819711862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.073 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds