Wall clock time and date at job start Tue Mar 31 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 120.00053 * 2 1 4 4 C 1.52997 * 109.47127 * 89.99427 * 3 2 1 5 5 C 1.53001 * 109.47353 * 304.99645 * 4 3 2 6 6 O 1.42894 * 109.47499 * 65.00086 * 4 3 2 7 7 C 1.50706 * 109.46831 * 185.00335 * 4 3 2 8 8 C 1.38237 * 119.99744 * 210.00383 * 7 4 3 9 9 C 1.38235 * 119.99712 * 180.02562 * 8 7 4 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00223 * 30.01594 * 7 4 3 13 13 C 1.34779 * 119.99924 * 179.97438 * 2 1 3 14 14 O 1.21281 * 119.99984 * 180.02562 * 13 2 1 15 15 C 1.50698 * 119.99912 * 0.02562 * 13 2 1 16 16 C 1.53001 * 109.47001 * 179.97438 * 15 13 2 17 17 C 1.50698 * 109.47322 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99595 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00310 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00102 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99866 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47009 * 90.00484 * 21 19 17 23 23 H 1.48500 * 109.46881 * 210.00470 * 21 19 17 24 24 H 1.48494 * 109.47145 * 329.99981 * 21 19 17 25 25 H 1.08997 * 109.46627 * 90.00363 * 1 2 3 26 26 H 1.09001 * 109.47223 * 210.00162 * 1 2 3 27 27 H 1.08996 * 109.47484 * 330.00689 * 1 2 3 28 28 H 1.09007 * 109.46653 * 329.99521 * 3 2 1 29 29 H 1.08997 * 109.46689 * 209.99488 * 3 2 1 30 30 H 1.08993 * 109.47154 * 300.00362 * 5 4 3 31 31 H 1.09001 * 109.46664 * 60.00290 * 5 4 3 32 32 H 1.08998 * 109.47218 * 179.97438 * 5 4 3 33 33 H 0.96705 * 113.99982 * 59.99764 * 6 4 3 34 34 H 1.08005 * 120.00088 * 359.97438 * 8 7 4 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07998 * 119.99975 * 0.02562 * 12 7 4 39 39 H 1.09004 * 109.47506 * 299.99697 * 15 13 2 40 40 H 1.08997 * 109.47133 * 59.99924 * 15 13 2 41 41 H 1.09001 * 109.47218 * 299.99844 * 16 15 13 42 42 H 1.08997 * 109.47050 * 60.00104 * 16 15 13 43 43 H 0.97001 * 119.99994 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 6 1.1240 1.7731 2.1990 6 8 3.3208 0.7727 2.0815 7 6 3.0961 3.0732 1.4442 8 6 3.9591 3.4286 2.4640 9 6 4.5490 4.6787 2.4658 10 6 4.2770 5.5730 1.4474 11 6 3.4103 5.2193 0.4302 12 6 2.8234 3.9677 0.4262 13 6 2.1389 -1.1672 0.0005 14 8 3.3517 -1.1672 0.0010 15 6 1.3854 -2.4723 0.0005 16 6 2.3796 -3.6352 0.0005 17 6 1.6262 -4.9403 -0.0001 18 1 0.5461 -4.9403 -0.0001 19 6 2.3155 -6.1344 0.0003 20 7 1.6579 -7.2733 0.0003 21 14 4.1836 -6.1344 0.0009 22 1 4.6781 -6.1343 1.4012 23 1 4.6788 -7.3469 -0.6988 24 1 4.6788 -4.9220 -0.6991 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6084 2.0284 -0.5140 29 1 3.1500 1.1383 -0.5138 30 1 0.4617 2.4885 1.7116 31 1 0.6585 0.7875 2.1977 32 1 1.3057 2.0874 3.2268 33 1 4.1836 0.6812 1.6544 34 1 4.1716 2.7299 3.2597 35 1 5.2229 4.9566 3.2627 36 1 4.7383 6.5495 1.4487 37 1 3.1943 5.9195 -0.3631 38 1 2.1488 3.6902 -0.3702 39 1 0.7584 -2.5299 0.8903 40 1 0.7591 -2.5302 -0.8897 41 1 3.0063 -3.5775 -0.8895 42 1 3.0063 -3.5775 0.8905 43 1 2.1429 -8.1134 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819711862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:38 Heat of formation + Delta-G solvation = -84.277253 kcal Electronic energy + Delta-G solvation = -23493.758373 eV Core-core repulsion = 20116.947876 eV Total energy + Delta-G solvation = -3376.810497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43226 -40.25111 -38.16140 -36.24335 -35.55158 -33.59682 -33.09609 -31.77864 -30.34177 -29.20630 -28.05928 -26.31037 -24.26351 -23.46115 -22.70649 -21.21457 -20.03669 -19.10762 -18.62197 -17.74703 -17.54831 -16.86609 -16.59148 -16.24479 -15.96635 -15.73206 -15.36390 -15.02674 -14.75650 -14.45077 -14.34265 -14.10450 -13.93734 -13.63556 -13.50468 -13.30540 -13.17406 -12.92352 -12.75875 -12.69068 -12.51366 -12.11093 -11.98834 -11.96095 -11.77567 -11.71616 -11.38942 -11.21372 -10.78300 -10.61129 -9.83144 -9.76890 -9.43606 -8.31882 -6.34483 0.39187 0.48940 1.32800 1.34061 1.49590 1.75455 2.09786 2.34733 2.85194 3.03816 3.26287 3.63686 3.74870 3.82868 4.03311 4.13228 4.16919 4.27562 4.34031 4.37821 4.47514 4.47704 4.59572 4.66295 4.69740 4.81483 4.87376 4.87584 4.93352 5.03069 5.08591 5.15480 5.24923 5.33755 5.45274 5.53569 5.59026 5.60788 5.61933 5.69313 6.09630 6.23360 6.41820 6.71010 6.71983 7.30866 7.31836 8.83861 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027986 B = 0.003434 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.274287 B = 8151.632763 C = 8652.962255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.609 5.609 3 C 0.093 3.907 4 C 0.156 3.844 5 C -0.133 4.133 6 O -0.563 6.563 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.129 4.129 10 C -0.126 4.126 11 C -0.124 4.124 12 C -0.121 4.121 13 C 0.516 3.484 14 O -0.576 6.576 15 C -0.114 4.114 16 C 0.009 3.991 17 C -0.528 4.528 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.944 5.944 21 Si 0.938 3.062 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.379 0.621 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.009 0.991 42 H 0.005 0.995 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 30.265 1.408 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.341 5.341 3 C -0.030 4.030 4 C 0.114 3.886 5 C -0.190 4.190 6 O -0.370 6.370 7 C -0.122 4.122 8 C -0.138 4.138 9 C -0.147 4.147 10 C -0.143 4.143 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.306 3.694 14 O -0.456 6.456 15 C -0.153 4.153 16 C -0.029 4.029 17 C -0.566 4.566 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.584 5.584 21 Si 0.763 3.237 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.027 0.973 42 H 0.023 0.977 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.555 30.017 1.796 30.075 hybrid contribution 1.314 -0.686 -0.156 1.490 sum 0.758 29.330 1.641 29.386 Atomic orbital electron populations 1.22230 0.77296 1.04781 1.03434 1.47772 1.08147 1.04745 1.73480 1.22282 0.98476 0.85786 0.96478 1.20519 0.90933 0.84610 0.92561 1.21859 0.93934 1.02984 1.00244 1.86525 1.29925 1.63379 1.57157 1.20482 0.98997 0.96349 0.96333 1.21096 0.97175 0.97063 0.98457 1.21408 1.00083 0.93620 0.99601 1.21521 0.98171 1.00342 0.94311 1.21488 0.96858 0.96573 0.99214 1.21340 1.00623 0.93875 0.97992 1.21066 0.87704 0.86338 0.74337 1.90574 1.15940 1.87936 1.51132 1.21480 0.99155 0.90491 1.04206 1.19186 0.94936 0.92706 0.96098 1.21436 0.94301 0.90658 1.50243 0.93217 1.25796 1.03076 0.95237 0.94270 1.70023 1.37688 0.98130 1.52574 0.85826 0.80834 0.77951 0.79077 1.19533 1.20211 1.18612 0.90898 0.90783 0.88236 0.86370 0.91540 0.88572 0.91767 0.92719 0.77299 0.86586 0.84721 0.83942 0.83591 0.84041 0.88725 0.88413 0.97283 0.97655 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 9.02 127.77 1.15 2.27 16 2 N -0.61 -15.61 2.46 -846.75 -2.08 -17.69 16 3 C 0.09 2.00 4.19 86.38 0.36 2.36 16 4 C 0.16 3.41 1.01 -11.54 -0.01 3.39 16 5 C -0.13 -2.53 7.45 71.98 0.54 -1.99 16 6 O -0.56 -16.59 10.83 -141.53 -1.53 -18.12 16 7 C -0.12 -2.34 4.81 -19.86 -0.10 -2.44 16 8 C -0.12 -2.42 9.35 22.27 0.21 -2.21 16 9 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 10 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 11 C -0.12 -1.65 10.05 22.27 0.22 -1.42 16 12 C -0.12 -1.84 9.14 22.27 0.20 -1.64 16 13 C 0.52 18.82 7.30 87.66 0.64 19.46 16 14 O -0.58 -25.21 14.54 4.41 0.06 -25.15 16 15 C -0.11 -4.49 4.19 29.85 0.13 -4.36 16 16 C 0.01 0.45 3.33 29.85 0.10 0.55 16 17 C -0.53 -31.14 9.66 25.60 0.25 -30.89 16 18 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 19 C 0.01 0.84 5.47 84.65 0.46 1.30 16 20 N -0.94 -59.85 13.96 21.45 0.30 -59.55 16 21 Si 0.94 47.75 27.47 68.60 1.88 49.63 16 22 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.26 -13.25 6.54 99.48 0.65 -12.60 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.41 6.44 -2.39 -0.02 1.40 16 27 H 0.10 1.16 6.03 -2.39 -0.01 1.15 16 28 H 0.12 1.65 6.14 -2.38 -0.01 1.64 16 29 H 0.07 1.74 7.42 -2.39 -0.02 1.72 16 30 H 0.10 1.24 7.83 -2.39 -0.02 1.22 16 31 H 0.06 1.35 6.12 -2.39 -0.01 1.33 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.38 11.04 8.74 -74.05 -0.65 10.40 16 34 H 0.12 2.53 7.49 -2.91 -0.02 2.51 16 35 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.14 1.54 6.05 -2.91 -0.02 1.52 16 39 H 0.09 3.50 7.40 -2.38 -0.02 3.48 16 40 H 0.10 3.52 8.11 -2.39 -0.02 3.51 16 41 H 0.01 0.47 7.16 -2.39 -0.02 0.46 16 42 H 0.01 0.27 7.53 -2.39 -0.02 0.25 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -76.49 344.28 3.54 -72.95 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.31 Total: 16.95 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.60 Total: -19.03 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.78 Total: -77.24 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.47 Total: -43.27 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.88 Total: 49.63 kcal Total: -76.49 3.54 -72.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819711862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.327 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds