Wall clock time and date at job start Tue Mar 31 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47216 * 2 1 4 4 H 1.09005 * 109.46725 * 54.99552 * 3 2 1 5 5 C 1.52993 * 109.47236 * 174.99830 * 3 2 1 6 6 O 1.42901 * 109.46977 * 55.00545 * 5 3 2 7 7 N 1.46503 * 109.46952 * 295.00179 * 3 2 1 8 8 C 1.46492 * 119.99937 * 299.99718 * 7 3 2 9 9 C 1.34772 * 119.99665 * 119.99791 * 7 3 2 10 10 O 1.21282 * 120.00806 * 359.97438 * 9 7 3 11 11 C 1.50709 * 119.99728 * 179.97438 * 9 7 3 12 12 C 1.50705 * 109.46896 * 179.97438 * 11 9 7 13 13 C 1.37629 * 120.12861 * 264.99898 * 12 11 9 14 14 C 1.38617 * 120.24501 * 179.97438 * 13 12 11 15 15 C 1.38651 * 120.50530 * 0.02562 * 14 13 12 16 16 C 1.37596 * 120.24684 * 0.02861 * 15 14 13 17 17 C 1.40698 * 120.12155 * 84.73317 * 12 11 9 18 18 C 1.41396 * 120.24812 * 359.97438 * 17 12 11 19 19 H 1.07998 * 120.00195 * 333.90478 * 18 17 12 20 20 C 1.39947 * 120.00212 * 153.89621 * 18 17 12 21 21 N 1.30830 * 119.99432 * 343.72507 * 20 18 17 22 22 Si 1.86798 * 120.00307 * 163.72331 * 20 18 17 23 23 H 1.48496 * 109.47215 * 59.99777 * 22 20 18 24 24 H 1.48495 * 109.47044 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46478 * 300.00089 * 22 20 18 26 26 H 1.09000 * 109.46889 * 299.99885 * 1 2 3 27 27 H 1.08994 * 109.47159 * 60.00288 * 1 2 3 28 28 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47368 * 240.00346 * 2 1 3 30 30 H 1.09006 * 109.47290 * 120.00109 * 2 1 3 31 31 H 1.09006 * 109.46872 * 174.99851 * 5 3 2 32 32 H 1.08994 * 109.47651 * 294.99790 * 5 3 2 33 33 H 0.96701 * 114.00060 * 180.02562 * 6 5 3 34 34 H 1.08993 * 109.47049 * 270.00050 * 8 7 3 35 35 H 1.09000 * 109.47309 * 149.99879 * 8 7 3 36 36 H 1.09005 * 109.47381 * 30.00200 * 8 7 3 37 37 H 1.08988 * 109.47149 * 299.99938 * 11 9 7 38 38 H 1.09003 * 109.46455 * 60.00319 * 11 9 7 39 39 H 1.08003 * 119.87970 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.74707 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.88213 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.12895 * 179.97438 * 16 15 14 43 43 H 0.97001 * 119.99292 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 8 4.1293 0.6405 -0.9121 7 7 1.6524 2.0975 -1.2518 8 6 2.1139 1.5590 -2.5336 9 6 0.8713 3.1954 -1.2241 10 8 0.4889 3.6411 -0.1629 11 6 0.4731 3.8696 -2.5118 12 6 -0.3943 5.0636 -2.2063 13 6 -1.7653 4.9452 -2.2282 14 6 -2.5654 6.0417 -1.9471 15 6 -1.9961 7.2685 -1.6417 16 6 -0.6277 7.4102 -1.6150 17 6 0.1946 6.3022 -1.8922 18 6 1.6020 6.4341 -1.8606 19 1 2.2207 5.5729 -1.6560 20 6 2.1934 7.6807 -2.0947 21 7 1.4980 8.6410 -2.6478 22 14 3.9755 7.9736 -1.6174 23 1 4.8471 7.0199 -2.3494 24 1 4.3594 9.3647 -1.9673 25 1 4.1362 7.7690 -0.1553 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9355 2.4656 0.0366 32 1 3.8499 1.0378 1.0960 33 1 5.0951 0.5957 -0.8937 34 1 3.0652 2.0195 -2.7998 35 1 1.3761 1.7767 -3.3059 36 1 2.2436 0.4800 -2.4490 37 1 1.3672 4.1959 -3.0427 38 1 -0.0823 3.1669 -3.1330 39 1 -2.2195 3.9942 -2.4645 40 1 -3.6404 5.9396 -1.9662 41 1 -2.6290 8.1163 -1.4247 42 1 -0.1863 8.3668 -1.3773 43 1 1.9078 9.5052 -2.8097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833336370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:48 Heat of formation + Delta-G solvation = -74.243516 kcal Electronic energy + Delta-G solvation = -24158.100008 eV Core-core repulsion = 20781.724607 eV Total energy + Delta-G solvation = -3376.375401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.73026 -37.77297 -36.87042 -35.10385 -33.57017 -32.93411 -31.39882 -29.41185 -28.97538 -26.74326 -26.14951 -24.93175 -23.47153 -21.24146 -20.85692 -19.58249 -18.53139 -17.50972 -17.09355 -16.34515 -15.68298 -15.62276 -15.21580 -14.51955 -14.30861 -14.18609 -13.84833 -13.40815 -13.20061 -12.81794 -12.57708 -12.51414 -12.38992 -12.27180 -11.87239 -11.62267 -11.52130 -11.15671 -11.13552 -11.06046 -10.92767 -10.84660 -10.72968 -10.63084 -10.36509 -10.02833 -9.42759 -9.30865 -9.11445 -9.00763 -8.19656 -7.25316 -7.23064 -6.68779 -4.28991 2.83668 3.01789 3.07557 3.10719 3.31570 3.38516 3.52329 3.96541 4.26578 4.70343 4.76120 5.07464 5.19779 5.31139 5.39662 5.45865 5.55470 5.66865 5.75501 5.80843 5.90698 5.99737 5.99944 6.07844 6.12919 6.21096 6.26378 6.34452 6.42024 6.50695 6.56584 6.85270 6.98918 7.13734 7.35271 7.48011 7.52220 7.69516 7.90415 7.99925 8.13221 8.18509 8.37302 8.70110 8.91991 8.97232 9.07319 10.25443 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.006111 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.966650 B = 4580.551524 C = 6091.724836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.141 3.859 4 H 0.109 0.891 5 C 0.067 3.933 6 O -0.567 6.567 7 N -0.618 5.618 8 C 0.093 3.907 9 C 0.517 3.483 10 O -0.524 6.524 11 C -0.068 4.068 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.239 4.239 15 C -0.108 4.108 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.456 4.456 19 H 0.072 0.928 20 C 0.077 3.923 21 N -0.796 5.796 22 Si 0.902 3.098 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.265 1.265 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.374 0.626 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -13.570 1.330 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.127 0.873 5 C -0.012 4.012 6 O -0.372 6.372 7 N -0.354 5.354 8 C -0.050 4.050 9 C 0.306 3.694 10 O -0.398 6.398 11 C -0.107 4.107 12 C -0.181 4.181 13 C -0.100 4.100 14 C -0.258 4.258 15 C -0.126 4.126 16 C -0.178 4.178 17 C 0.126 3.874 18 C -0.485 4.485 19 H 0.091 0.909 20 C -0.140 4.140 21 N -0.422 5.422 22 Si 0.727 3.273 23 H -0.191 1.191 24 H -0.203 1.203 25 H -0.190 1.190 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.220 0.780 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.413 -13.133 1.655 13.953 hybrid contribution 1.502 0.309 0.324 1.567 sum 5.915 -12.824 1.979 14.261 Atomic orbital electron populations 1.21717 0.95580 1.00859 1.02459 1.21748 0.96153 0.95997 1.02448 1.21125 0.91880 0.93921 0.89406 0.87305 1.22601 0.94299 0.94450 0.89859 1.86507 1.24929 1.72308 1.53407 1.47926 1.52113 1.29019 1.06345 1.21622 0.99254 0.99560 0.84567 1.21257 0.76846 0.78702 0.92565 1.90653 1.53745 1.62957 1.32494 1.20282 1.00845 0.95718 0.93886 1.19099 0.92118 0.94527 1.12354 1.20291 0.93268 0.96242 1.00217 1.20295 0.96838 0.94258 1.14438 1.20666 0.95295 0.95697 1.00973 1.21287 0.91833 0.99839 1.04882 1.17330 0.93100 0.90072 0.86861 1.19420 0.91912 0.94542 1.42674 0.90946 1.25864 1.00024 0.95646 0.92468 1.69819 1.38187 1.04043 1.30154 0.86468 0.82581 0.77977 0.80274 1.19142 1.20333 1.18967 0.92732 0.92597 0.93165 0.90921 0.91670 0.93096 0.93127 0.77993 0.92965 0.91842 0.91088 0.88721 0.90786 0.89850 0.89728 0.89637 0.86566 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.80 37.16 0.36 -1.50 16 2 C -0.13 -1.47 5.07 -26.73 -0.14 -1.60 16 3 C 0.14 1.97 2.56 -67.93 -0.17 1.80 16 4 H 0.11 1.76 6.90 -51.93 -0.36 1.40 16 5 C 0.07 0.78 6.79 37.15 0.25 1.03 16 6 O -0.57 -5.75 10.61 -35.23 -0.37 -6.12 16 7 N -0.62 -9.79 2.21 -173.94 -0.39 -10.18 16 8 C 0.09 1.21 8.53 59.84 0.51 1.72 16 9 C 0.52 10.45 7.29 -10.98 -0.08 10.37 16 10 O -0.52 -12.71 15.36 5.56 0.09 -12.63 16 11 C -0.07 -1.38 3.73 -29.03 -0.11 -1.49 16 12 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 13 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 14 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 15 C -0.11 -2.69 10.02 -39.66 -0.40 -3.08 16 16 C -0.16 -4.33 8.69 -38.87 -0.34 -4.67 16 17 C 0.13 3.51 5.56 -106.82 -0.59 2.92 16 18 C -0.46 -12.21 8.14 -37.74 -0.31 -12.52 16 19 H 0.07 1.90 6.67 -52.49 -0.35 1.55 16 20 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 21 N -0.80 -20.84 10.96 55.55 0.61 -20.24 16 22 Si 0.90 19.13 29.59 -169.99 -5.03 14.10 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.79 7.75 -51.93 -0.40 0.38 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.84 6.06 -51.93 -0.31 0.53 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.37 2.28 9.12 45.56 0.42 2.70 16 34 H 0.05 0.68 7.97 -51.93 -0.41 0.26 16 35 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 36 H 0.07 0.82 5.78 -51.93 -0.30 0.52 16 37 H 0.09 1.94 7.05 -51.94 -0.37 1.57 16 38 H 0.07 1.30 7.31 -51.93 -0.38 0.92 16 39 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 40 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.12 3.24 6.21 -52.49 -0.33 2.92 16 43 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -31.45 345.98 -7.86 -39.31 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.65 Total: 8.99 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -2.34 Total: -18.45 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 0.22 Total: -30.41 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.29 Total: -18.75 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.45 -7.86 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833336370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.934 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds