Wall clock time and date at job start Tue Mar 31 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47216 * 2 1 4 4 H 1.09005 * 109.46725 * 54.99552 * 3 2 1 5 5 C 1.52993 * 109.47236 * 174.99830 * 3 2 1 6 6 O 1.42901 * 109.46977 * 55.00545 * 5 3 2 7 7 N 1.46503 * 109.46952 * 295.00179 * 3 2 1 8 8 C 1.46492 * 119.99937 * 299.99718 * 7 3 2 9 9 C 1.34772 * 119.99665 * 119.99791 * 7 3 2 10 10 O 1.21282 * 120.00806 * 359.97438 * 9 7 3 11 11 C 1.50709 * 119.99728 * 179.97438 * 9 7 3 12 12 C 1.50705 * 109.46896 * 179.97438 * 11 9 7 13 13 C 1.37629 * 120.12861 * 264.99898 * 12 11 9 14 14 C 1.38617 * 120.24501 * 179.97438 * 13 12 11 15 15 C 1.38651 * 120.50530 * 0.02562 * 14 13 12 16 16 C 1.37596 * 120.24684 * 0.02861 * 15 14 13 17 17 C 1.40698 * 120.12155 * 84.73317 * 12 11 9 18 18 C 1.41396 * 120.24812 * 359.97438 * 17 12 11 19 19 H 1.07998 * 120.00195 * 333.90478 * 18 17 12 20 20 C 1.39947 * 120.00212 * 153.89621 * 18 17 12 21 21 N 1.30830 * 119.99432 * 343.72507 * 20 18 17 22 22 Si 1.86798 * 120.00307 * 163.72331 * 20 18 17 23 23 H 1.48496 * 109.47215 * 59.99777 * 22 20 18 24 24 H 1.48495 * 109.47044 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46478 * 300.00089 * 22 20 18 26 26 H 1.09000 * 109.46889 * 299.99885 * 1 2 3 27 27 H 1.08994 * 109.47159 * 60.00288 * 1 2 3 28 28 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47368 * 240.00346 * 2 1 3 30 30 H 1.09006 * 109.47290 * 120.00109 * 2 1 3 31 31 H 1.09006 * 109.46872 * 174.99851 * 5 3 2 32 32 H 1.08994 * 109.47651 * 294.99790 * 5 3 2 33 33 H 0.96701 * 114.00060 * 180.02562 * 6 5 3 34 34 H 1.08993 * 109.47049 * 270.00050 * 8 7 3 35 35 H 1.09000 * 109.47309 * 149.99879 * 8 7 3 36 36 H 1.09005 * 109.47381 * 30.00200 * 8 7 3 37 37 H 1.08988 * 109.47149 * 299.99938 * 11 9 7 38 38 H 1.09003 * 109.46455 * 60.00319 * 11 9 7 39 39 H 1.08003 * 119.87970 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.74707 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.88213 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.12895 * 179.97438 * 16 15 14 43 43 H 0.97001 * 119.99292 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 8 4.1293 0.6405 -0.9121 7 7 1.6524 2.0975 -1.2518 8 6 2.1139 1.5590 -2.5336 9 6 0.8713 3.1954 -1.2241 10 8 0.4889 3.6411 -0.1629 11 6 0.4731 3.8696 -2.5118 12 6 -0.3943 5.0636 -2.2063 13 6 -1.7653 4.9452 -2.2282 14 6 -2.5654 6.0417 -1.9471 15 6 -1.9961 7.2685 -1.6417 16 6 -0.6277 7.4102 -1.6150 17 6 0.1946 6.3022 -1.8922 18 6 1.6020 6.4341 -1.8606 19 1 2.2207 5.5729 -1.6560 20 6 2.1934 7.6807 -2.0947 21 7 1.4980 8.6410 -2.6478 22 14 3.9755 7.9736 -1.6174 23 1 4.8471 7.0199 -2.3494 24 1 4.3594 9.3647 -1.9673 25 1 4.1362 7.7690 -0.1553 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9355 2.4656 0.0366 32 1 3.8499 1.0378 1.0960 33 1 5.0951 0.5957 -0.8937 34 1 3.0652 2.0195 -2.7998 35 1 1.3761 1.7767 -3.3059 36 1 2.2436 0.4800 -2.4490 37 1 1.3672 4.1959 -3.0427 38 1 -0.0823 3.1669 -3.1330 39 1 -2.2195 3.9942 -2.4645 40 1 -3.6404 5.9396 -1.9662 41 1 -2.6290 8.1163 -1.4247 42 1 -0.1863 8.3668 -1.3773 43 1 1.9078 9.5052 -2.8097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833336370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:47 Heat of formation + Delta-G solvation = -93.733948 kcal Electronic energy + Delta-G solvation = -24158.945176 eV Core-core repulsion = 20781.724607 eV Total energy + Delta-G solvation = -3377.220570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15115 -39.40614 -38.22051 -36.22217 -35.50168 -34.21279 -33.04349 -31.34476 -30.06710 -28.40913 -27.40082 -26.80072 -24.47232 -22.85334 -22.60889 -21.14274 -19.87061 -19.04496 -18.58845 -17.58534 -17.32523 -16.93425 -16.70052 -16.24428 -15.63960 -15.49486 -15.24901 -14.94821 -14.67261 -14.37834 -14.11910 -13.68759 -13.61305 -13.40711 -13.36547 -13.30183 -12.98491 -12.83892 -12.75402 -12.64040 -12.48589 -12.17062 -12.12658 -11.92144 -11.72224 -11.32321 -11.20051 -11.03296 -10.91752 -10.58303 -9.48220 -9.22632 -9.15477 -8.59555 -6.29397 0.99748 1.13430 1.33297 1.44035 1.52780 1.84056 2.18656 2.20904 2.78016 3.43674 3.65025 3.80548 4.05527 4.13820 4.23293 4.35455 4.37575 4.42644 4.48584 4.54446 4.59113 4.70364 4.72107 4.75517 4.79888 4.82661 5.01951 5.05253 5.06128 5.14392 5.19320 5.22733 5.36836 5.42526 5.54835 5.76333 5.79352 6.03909 6.16466 6.21292 6.42357 6.54662 6.73683 6.92426 6.99332 7.11203 7.41926 8.36837 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.006111 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.966650 B = 4580.551524 C = 6091.724836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.130 3.870 4 H 0.080 0.920 5 C 0.077 3.923 6 O -0.570 6.570 7 N -0.607 5.607 8 C 0.090 3.910 9 C 0.516 3.484 10 O -0.576 6.576 11 C -0.065 4.065 12 C -0.187 4.187 13 C -0.093 4.093 14 C -0.241 4.241 15 C -0.117 4.117 16 C -0.193 4.193 17 C 0.095 3.905 18 C -0.482 4.482 19 H 0.067 0.933 20 C 0.036 3.964 21 N -0.826 5.826 22 Si 0.970 3.030 23 H -0.254 1.254 24 H -0.265 1.265 25 H -0.271 1.271 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.394 0.606 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -15.938 0.846 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.027 3.973 4 H 0.098 0.902 5 C -0.002 4.002 6 O -0.378 6.378 7 N -0.341 5.341 8 C -0.052 4.052 9 C 0.306 3.694 10 O -0.455 6.455 11 C -0.104 4.104 12 C -0.188 4.188 13 C -0.111 4.111 14 C -0.260 4.260 15 C -0.136 4.136 16 C -0.212 4.212 17 C 0.093 3.907 18 C -0.512 4.512 19 H 0.085 0.915 20 C -0.178 4.178 21 N -0.452 5.452 22 Si 0.791 3.209 23 H -0.178 1.178 24 H -0.189 1.189 25 H -0.196 1.196 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.244 0.756 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.502 -15.548 1.137 16.532 hybrid contribution 1.108 0.950 0.450 1.527 sum 6.609 -14.598 1.587 16.103 Atomic orbital electron populations 1.21703 0.96310 1.01727 1.00712 1.21685 0.95362 0.94246 1.03869 1.21323 0.93742 0.94783 0.87480 0.90167 1.22357 0.92421 0.93882 0.91536 1.86438 1.26928 1.71597 1.52848 1.47916 1.50325 1.27573 1.08296 1.21822 0.99495 1.00652 0.83255 1.21117 0.77250 0.79559 0.91500 1.90629 1.56202 1.64809 1.33892 1.20259 1.00480 0.95038 0.94620 1.19569 0.93371 0.95099 1.10807 1.20713 0.93117 0.97610 0.99625 1.20704 0.98561 0.93695 1.13047 1.20945 0.94744 0.97193 1.00681 1.21297 0.93132 0.99504 1.07275 1.17730 0.93784 0.91306 0.87853 1.19544 0.92070 0.95285 1.44254 0.91483 1.26659 1.04325 0.94969 0.91855 1.69879 1.40089 1.04570 1.30703 0.85440 0.77366 0.78670 0.79406 1.17773 1.18917 1.19571 0.94378 0.94468 0.90925 0.89955 0.89570 0.95222 0.90556 0.75616 0.92736 0.90955 0.89019 0.89066 0.87614 0.86818 0.86670 0.87605 0.88486 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.80 71.98 0.71 -2.74 16 2 C -0.11 -2.38 5.07 30.60 0.16 -2.23 16 3 C 0.13 3.51 2.56 44.99 0.11 3.62 16 4 H 0.08 2.65 6.90 -2.38 -0.02 2.64 16 5 C 0.08 1.64 6.79 71.98 0.49 2.13 16 6 O -0.57 -9.74 10.61 -148.98 -1.58 -11.32 16 7 N -0.61 -18.68 2.21 -822.60 -1.82 -20.50 16 8 C 0.09 2.12 8.53 127.77 1.09 3.21 16 9 C 0.52 20.99 7.29 87.66 0.64 21.63 16 10 O -0.58 -28.89 15.36 -3.04 -0.05 -28.94 16 11 C -0.06 -2.62 3.73 29.11 0.11 -2.51 16 12 C -0.19 -9.32 4.43 -19.41 -0.09 -9.41 16 13 C -0.09 -4.32 9.66 22.22 0.21 -4.10 16 14 C -0.24 -11.28 10.05 22.46 0.23 -11.05 16 15 C -0.12 -5.92 10.02 22.22 0.22 -5.70 16 16 C -0.19 -10.91 8.69 22.73 0.20 -10.72 16 17 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 18 C -0.48 -26.74 8.14 23.46 0.19 -26.55 16 19 H 0.07 3.66 6.67 -2.91 -0.02 3.64 16 20 C 0.04 1.89 5.16 85.26 0.44 2.33 16 21 N -0.83 -44.58 10.96 21.83 0.24 -44.34 16 22 Si 0.97 39.75 29.59 68.60 2.03 41.78 16 23 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.04 0.99 7.75 -2.39 -0.02 0.98 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.61 6.06 -2.39 -0.01 1.59 16 30 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.39 3.45 9.12 -74.06 -0.68 2.77 16 34 H 0.05 1.29 7.97 -2.39 -0.02 1.27 16 35 H 0.07 1.58 6.44 -2.39 -0.02 1.57 16 36 H 0.09 1.81 5.78 -2.38 -0.01 1.80 16 37 H 0.09 3.75 7.05 -2.39 -0.02 3.73 16 38 H 0.11 3.51 7.31 -2.39 -0.02 3.50 16 39 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 42 H 0.10 5.73 6.21 -2.91 -0.02 5.71 16 43 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 Total: -1.00 -71.00 345.98 3.75 -67.25 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.34 Total: 32.90 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 4.59 Total: -36.82 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -1.58 Total: -64.85 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.63 Total: -40.26 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -71.00 3.75 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833336370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.485 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds