Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47460 * 2 1 4 4 H 1.09001 * 109.46454 * 304.99520 * 3 2 1 5 5 C 1.53002 * 109.47246 * 185.00104 * 3 2 1 6 6 O 1.42901 * 109.46683 * 306.06323 * 5 3 2 7 7 N 1.46493 * 109.47202 * 64.99161 * 3 2 1 8 8 C 1.46507 * 119.99771 * 53.69173 * 7 3 2 9 9 C 1.34773 * 120.00680 * 233.68238 * 7 3 2 10 10 O 1.21284 * 119.99608 * 0.02562 * 9 7 3 11 11 C 1.50691 * 120.00468 * 180.02562 * 9 7 3 12 12 C 1.50703 * 109.47154 * 180.02562 * 11 9 7 13 13 C 1.37641 * 120.12860 * 264.99679 * 12 11 9 14 14 C 1.38615 * 120.24782 * 179.70466 * 13 12 11 15 15 C 1.38653 * 120.50069 * 0.02562 * 14 13 12 16 16 C 1.37596 * 120.25041 * 0.02562 * 15 14 13 17 17 C 1.40698 * 120.12593 * 84.72744 * 12 11 9 18 18 C 1.41399 * 120.24718 * 0.24651 * 17 12 11 19 19 H 1.07992 * 119.99629 * 325.27437 * 18 17 12 20 20 C 1.39947 * 119.99835 * 145.27002 * 18 17 12 21 21 N 1.30824 * 120.00038 * 4.28409 * 20 18 17 22 22 Si 1.86799 * 119.99646 * 184.28242 * 20 18 17 23 23 H 1.48494 * 109.47141 * 89.99996 * 22 20 18 24 24 H 1.48502 * 109.46770 * 210.00338 * 22 20 18 25 25 H 1.48506 * 109.46985 * 329.99919 * 22 20 18 26 26 H 1.08993 * 109.47127 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47425 * 300.00856 * 1 2 3 28 28 H 1.09003 * 109.46915 * 60.00522 * 1 2 3 29 29 H 1.09003 * 109.47733 * 239.99586 * 2 1 3 30 30 H 1.09003 * 109.46915 * 119.99478 * 2 1 3 31 31 H 1.09000 * 109.47221 * 66.06750 * 5 3 2 32 32 H 1.09002 * 109.46611 * 186.07091 * 5 3 2 33 33 H 0.96702 * 113.99542 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.46786 * 275.02272 * 8 7 3 35 35 H 1.08999 * 109.47241 * 35.02107 * 8 7 3 36 36 H 1.09004 * 109.47359 * 155.02078 * 8 7 3 37 37 H 1.08999 * 109.47737 * 60.00369 * 11 9 7 38 38 H 1.09001 * 109.47294 * 300.00152 * 11 9 7 39 39 H 1.08000 * 119.87199 * 359.72456 * 13 12 11 40 40 H 1.07996 * 119.74315 * 180.02562 * 14 13 12 41 41 H 1.08002 * 119.87458 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.12495 * 179.97438 * 16 15 14 43 43 H 0.97000 * 119.99582 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 8 4.1280 0.6204 0.8970 7 7 1.6524 2.0976 1.2517 8 6 1.9962 1.4837 2.5367 9 6 0.9796 3.2650 1.2212 10 8 0.6948 3.7731 0.1574 11 6 0.5814 3.9391 2.5087 12 6 -0.1541 5.2177 2.1998 13 6 0.5248 6.4146 2.1672 14 6 -0.1480 7.5913 1.8774 15 6 -1.5100 7.5776 1.6177 16 6 -2.2091 6.3928 1.6458 17 6 -1.5362 5.1917 1.9380 18 6 -2.2440 3.9680 1.9681 19 1 -1.7649 3.0589 1.6362 20 6 -3.5653 3.9351 2.4283 21 7 -4.1734 5.0475 2.7512 22 14 -4.4605 2.3028 2.5812 23 1 -4.2364 1.7404 3.9371 24 1 -5.9148 2.5139 2.3668 25 1 -3.9421 1.3564 1.5609 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8493 1.0553 -1.1035 32 1 3.9371 2.4631 -0.0176 33 1 5.0938 0.5751 0.8782 34 1 1.2342 0.7518 2.8051 35 1 2.9635 0.9879 2.4553 36 1 2.0465 2.2545 3.3058 37 1 1.4741 4.1649 3.0920 38 1 -0.0679 3.2759 3.0804 39 1 1.5857 6.4369 2.3680 40 1 0.3927 8.5258 1.8536 41 1 -2.0240 8.5003 1.3926 42 1 -3.2700 6.3845 1.4437 43 1 -5.0893 5.0246 3.0698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833336371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = -73.086329 kcal Electronic energy + Delta-G solvation = -24218.415626 eV Core-core repulsion = 20842.090404 eV Total energy + Delta-G solvation = -3376.325222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.74246 -37.80261 -36.90651 -35.13617 -33.48772 -32.89004 -31.39523 -29.36255 -29.01131 -26.75817 -26.10464 -24.91685 -23.43972 -21.23935 -20.80696 -19.60731 -18.53887 -17.59444 -17.06241 -16.36323 -15.79694 -15.53413 -15.24393 -14.46461 -14.25314 -14.16445 -13.86004 -13.42670 -13.12146 -12.83224 -12.61896 -12.53017 -12.36161 -12.19370 -11.81923 -11.65492 -11.46334 -11.18263 -11.08274 -11.02860 -10.91875 -10.80119 -10.74427 -10.56652 -10.28569 -10.06158 -9.47589 -9.37523 -9.07658 -9.00196 -8.18846 -7.24757 -7.10906 -6.53951 -4.31644 2.83699 3.02174 3.11432 3.16056 3.29631 3.36651 3.52307 4.02267 4.18451 4.76225 4.79722 5.04493 5.22305 5.30868 5.38906 5.46300 5.58299 5.66256 5.80410 5.83584 5.90582 6.02268 6.07135 6.09794 6.12272 6.23069 6.32354 6.37061 6.48897 6.52812 6.55651 6.84499 6.98396 7.20195 7.36662 7.45771 7.50913 7.72714 7.90920 7.97898 8.17657 8.18730 8.40273 8.74195 8.91179 9.02142 9.08984 10.36977 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.006150 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.304903 B = 4551.635781 C = 5987.246206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.141 3.859 4 H 0.109 0.891 5 C 0.068 3.932 6 O -0.564 6.564 7 N -0.616 5.616 8 C 0.073 3.927 9 C 0.517 3.483 10 O -0.525 6.525 11 C -0.069 4.069 12 C -0.169 4.169 13 C -0.091 4.091 14 C -0.228 4.228 15 C -0.115 4.115 16 C -0.148 4.148 17 C 0.123 3.877 18 C -0.457 4.457 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.813 5.813 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.263 1.263 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.372 0.628 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.930 -9.564 -1.144 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C 0.037 3.963 4 H 0.127 0.873 5 C -0.011 4.011 6 O -0.370 6.370 7 N -0.352 5.352 8 C -0.070 4.070 9 C 0.306 3.694 10 O -0.400 6.400 11 C -0.109 4.109 12 C -0.170 4.170 13 C -0.109 4.109 14 C -0.247 4.247 15 C -0.133 4.133 16 C -0.167 4.167 17 C 0.120 3.880 18 C -0.488 4.488 19 H 0.090 0.910 20 C -0.143 4.143 21 N -0.441 5.441 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.187 1.187 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.888 -9.276 -1.483 14.380 hybrid contribution 0.133 -0.604 0.025 0.619 sum 11.021 -9.880 -1.457 14.873 Atomic orbital electron populations 1.21748 0.95308 1.01039 1.02838 1.21720 0.96321 0.95638 1.02441 1.21133 0.91605 0.94216 0.89361 0.87344 1.22668 0.94434 0.93843 0.90149 1.86485 1.24924 1.71233 1.54366 1.47913 1.58023 1.23109 1.06159 1.21940 1.01799 0.98514 0.84726 1.21231 0.76012 0.79580 0.92527 1.90655 1.53172 1.63838 1.32327 1.20292 0.99555 0.96932 0.94103 1.19246 0.94996 0.91532 1.11259 1.20307 0.96673 0.92996 1.00941 1.20365 0.94854 0.96164 1.13362 1.20748 0.94050 0.97103 1.01425 1.21576 1.00472 0.91716 1.02934 1.17392 0.89858 0.93431 0.87279 1.19419 0.96306 0.94848 1.38246 0.90997 1.25832 0.97253 0.97657 0.93512 1.69764 1.12444 1.27470 1.34382 0.86332 0.78660 0.82432 0.79398 1.19586 1.20325 1.18745 0.93130 0.92200 0.92694 0.91726 0.90927 0.93066 0.93325 0.78124 0.93549 0.89154 0.91418 0.90774 0.88576 0.89807 0.89663 0.89544 0.85501 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.80 37.15 0.36 -1.80 16 2 C -0.12 -1.53 4.98 -26.73 -0.13 -1.66 16 3 C 0.14 1.97 2.54 -67.93 -0.17 1.80 16 4 H 0.11 1.76 6.93 -51.93 -0.36 1.40 16 5 C 0.07 0.73 6.84 37.16 0.25 0.99 16 6 O -0.56 -5.29 10.02 -35.23 -0.35 -5.64 16 7 N -0.62 -9.77 2.21 -173.93 -0.39 -10.15 16 8 C 0.07 0.95 9.04 59.85 0.54 1.49 16 9 C 0.52 10.46 7.28 -10.99 -0.08 10.38 16 10 O -0.53 -12.76 15.37 5.55 0.09 -12.68 16 11 C -0.07 -1.41 3.69 -29.04 -0.11 -1.52 16 12 C -0.17 -4.15 4.43 -103.91 -0.46 -4.61 16 13 C -0.09 -2.14 9.66 -39.66 -0.38 -2.52 16 14 C -0.23 -5.39 10.05 -39.29 -0.39 -5.79 16 15 C -0.11 -2.85 10.02 -39.66 -0.40 -3.25 16 16 C -0.15 -4.02 8.67 -38.87 -0.34 -4.36 16 17 C 0.12 3.34 5.55 -106.82 -0.59 2.75 16 18 C -0.46 -12.32 7.92 -37.74 -0.30 -12.62 16 19 H 0.07 1.92 6.97 -52.49 -0.37 1.55 16 20 C 0.07 1.86 5.42 -17.34 -0.09 1.76 16 21 N -0.81 -21.55 10.61 55.55 0.59 -20.96 16 22 Si 0.91 19.42 29.56 -169.99 -5.03 14.40 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.89 6.92 -51.93 -0.36 0.53 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.37 1.89 9.12 45.56 0.42 2.30 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.05 5.23 -51.93 -0.27 0.78 16 36 H 0.07 0.83 6.26 -51.93 -0.33 0.51 16 37 H 0.07 1.29 7.33 -51.93 -0.38 0.91 16 38 H 0.10 1.96 7.17 -51.93 -0.37 1.58 16 39 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.13 3.58 6.14 -52.48 -0.32 3.26 16 43 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -31.67 346.16 -7.85 -39.51 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.68 Total: 9.27 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.29 Total: -18.96 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.20 Total: -31.11 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.27 Total: -18.32 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.67 -7.85 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833336371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.572 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds