Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47460 * 2 1 4 4 H 1.09001 * 109.46454 * 304.99520 * 3 2 1 5 5 C 1.53002 * 109.47246 * 185.00104 * 3 2 1 6 6 O 1.42901 * 109.46683 * 306.06323 * 5 3 2 7 7 N 1.46493 * 109.47202 * 64.99161 * 3 2 1 8 8 C 1.46507 * 119.99771 * 53.69173 * 7 3 2 9 9 C 1.34773 * 120.00680 * 233.68238 * 7 3 2 10 10 O 1.21284 * 119.99608 * 0.02562 * 9 7 3 11 11 C 1.50691 * 120.00468 * 180.02562 * 9 7 3 12 12 C 1.50703 * 109.47154 * 180.02562 * 11 9 7 13 13 C 1.37641 * 120.12860 * 264.99679 * 12 11 9 14 14 C 1.38615 * 120.24782 * 179.70466 * 13 12 11 15 15 C 1.38653 * 120.50069 * 0.02562 * 14 13 12 16 16 C 1.37596 * 120.25041 * 0.02562 * 15 14 13 17 17 C 1.40698 * 120.12593 * 84.72744 * 12 11 9 18 18 C 1.41399 * 120.24718 * 0.24651 * 17 12 11 19 19 H 1.07992 * 119.99629 * 325.27437 * 18 17 12 20 20 C 1.39947 * 119.99835 * 145.27002 * 18 17 12 21 21 N 1.30824 * 120.00038 * 4.28409 * 20 18 17 22 22 Si 1.86799 * 119.99646 * 184.28242 * 20 18 17 23 23 H 1.48494 * 109.47141 * 89.99996 * 22 20 18 24 24 H 1.48502 * 109.46770 * 210.00338 * 22 20 18 25 25 H 1.48506 * 109.46985 * 329.99919 * 22 20 18 26 26 H 1.08993 * 109.47127 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47425 * 300.00856 * 1 2 3 28 28 H 1.09003 * 109.46915 * 60.00522 * 1 2 3 29 29 H 1.09003 * 109.47733 * 239.99586 * 2 1 3 30 30 H 1.09003 * 109.46915 * 119.99478 * 2 1 3 31 31 H 1.09000 * 109.47221 * 66.06750 * 5 3 2 32 32 H 1.09002 * 109.46611 * 186.07091 * 5 3 2 33 33 H 0.96702 * 113.99542 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.46786 * 275.02272 * 8 7 3 35 35 H 1.08999 * 109.47241 * 35.02107 * 8 7 3 36 36 H 1.09004 * 109.47359 * 155.02078 * 8 7 3 37 37 H 1.08999 * 109.47737 * 60.00369 * 11 9 7 38 38 H 1.09001 * 109.47294 * 300.00152 * 11 9 7 39 39 H 1.08000 * 119.87199 * 359.72456 * 13 12 11 40 40 H 1.07996 * 119.74315 * 180.02562 * 14 13 12 41 41 H 1.08002 * 119.87458 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.12495 * 179.97438 * 16 15 14 43 43 H 0.97000 * 119.99582 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 8 4.1280 0.6204 0.8970 7 7 1.6524 2.0976 1.2517 8 6 1.9962 1.4837 2.5367 9 6 0.9796 3.2650 1.2212 10 8 0.6948 3.7731 0.1574 11 6 0.5814 3.9391 2.5087 12 6 -0.1541 5.2177 2.1998 13 6 0.5248 6.4146 2.1672 14 6 -0.1480 7.5913 1.8774 15 6 -1.5100 7.5776 1.6177 16 6 -2.2091 6.3928 1.6458 17 6 -1.5362 5.1917 1.9380 18 6 -2.2440 3.9680 1.9681 19 1 -1.7649 3.0589 1.6362 20 6 -3.5653 3.9351 2.4283 21 7 -4.1734 5.0475 2.7512 22 14 -4.4605 2.3028 2.5812 23 1 -4.2364 1.7404 3.9371 24 1 -5.9148 2.5139 2.3668 25 1 -3.9421 1.3564 1.5609 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8493 1.0553 -1.1035 32 1 3.9371 2.4631 -0.0176 33 1 5.0938 0.5751 0.8782 34 1 1.2342 0.7518 2.8051 35 1 2.9635 0.9879 2.4553 36 1 2.0465 2.2545 3.3058 37 1 1.4741 4.1649 3.0920 38 1 -0.0679 3.2759 3.0804 39 1 1.5857 6.4369 2.3680 40 1 0.3927 8.5258 1.8536 41 1 -2.0240 8.5003 1.3926 42 1 -3.2700 6.3845 1.4437 43 1 -5.0893 5.0246 3.0698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833336371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = -92.792930 kcal Electronic energy + Delta-G solvation = -24219.270168 eV Core-core repulsion = 20842.090404 eV Total energy + Delta-G solvation = -3377.179764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15759 -39.41517 -38.23985 -36.23640 -35.43680 -34.20909 -33.05159 -31.30668 -30.11333 -28.43084 -27.35039 -26.78363 -24.48282 -22.80652 -22.62655 -21.16763 -19.87666 -19.02236 -18.61154 -17.60060 -17.34263 -16.86154 -16.77819 -16.19231 -15.63651 -15.49788 -15.21366 -14.96959 -14.69304 -14.36483 -14.12631 -13.72389 -13.60970 -13.45729 -13.36271 -13.27461 -12.85239 -12.83959 -12.70331 -12.68435 -12.46917 -12.20559 -12.08636 -11.93162 -11.82254 -11.36557 -11.28152 -10.99637 -10.91509 -10.54660 -9.45964 -9.17266 -9.07633 -8.46950 -6.34206 0.98699 1.14184 1.34416 1.46994 1.49593 1.82882 2.21011 2.22347 2.83037 3.41977 3.63816 3.78398 4.05289 4.09443 4.21493 4.33002 4.36166 4.45743 4.48638 4.55500 4.62466 4.67436 4.71072 4.75537 4.79659 4.82316 5.00245 5.02148 5.06261 5.15495 5.23007 5.30465 5.38942 5.41300 5.56227 5.77314 5.80867 6.03721 6.19302 6.21123 6.44101 6.53980 6.76374 6.96118 7.02797 7.11888 7.41197 8.45672 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.006150 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.304903 B = 4551.635781 C = 5987.246206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C 0.130 3.870 4 H 0.079 0.921 5 C 0.081 3.919 6 O -0.570 6.570 7 N -0.606 5.606 8 C 0.069 3.931 9 C 0.515 3.485 10 O -0.579 6.579 11 C -0.067 4.067 12 C -0.175 4.175 13 C -0.101 4.101 14 C -0.228 4.228 15 C -0.124 4.124 16 C -0.181 4.181 17 C 0.088 3.912 18 C -0.481 4.481 19 H 0.062 0.938 20 C 0.030 3.970 21 N -0.843 5.843 22 Si 0.974 3.026 23 H -0.257 1.257 24 H -0.269 1.269 25 H -0.266 1.266 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.395 0.605 34 H 0.050 0.950 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.199 -11.306 -0.434 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C 0.026 3.974 4 H 0.097 0.903 5 C 0.002 3.998 6 O -0.379 6.379 7 N -0.339 5.339 8 C -0.073 4.073 9 C 0.305 3.695 10 O -0.458 6.458 11 C -0.106 4.106 12 C -0.177 4.177 13 C -0.119 4.119 14 C -0.247 4.247 15 C -0.143 4.143 16 C -0.200 4.200 17 C 0.086 3.914 18 C -0.512 4.512 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.471 5.471 22 Si 0.796 3.204 23 H -0.181 1.181 24 H -0.194 1.194 25 H -0.190 1.190 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.245 0.755 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.211 -11.048 -0.746 17.238 hybrid contribution -0.457 -0.037 -0.198 0.500 sum 12.754 -11.086 -0.945 16.925 Atomic orbital electron populations 1.21743 0.97052 1.01578 1.00522 1.21665 0.94587 0.94695 1.04027 1.21329 0.94189 0.94451 0.87401 0.90301 1.22371 0.91753 0.93891 0.91742 1.86387 1.27119 1.70586 1.53813 1.47913 1.56203 1.21664 1.08128 1.22165 1.02921 0.98833 0.83386 1.21118 0.76163 0.80716 0.91486 1.90630 1.55680 1.65697 1.33763 1.20279 1.00368 0.95225 0.94720 1.19703 0.94439 0.93868 1.09667 1.20745 0.98354 0.92569 1.00202 1.20789 0.94434 0.97740 1.11713 1.21018 0.95005 0.97087 1.01170 1.21557 0.99936 0.93204 1.05348 1.17775 0.91547 0.93661 0.88394 1.19492 0.97433 0.94531 1.39752 0.91936 1.26647 0.97583 1.01204 0.92744 1.69856 1.12944 1.29387 1.34938 0.85317 0.77533 0.77858 0.79716 1.18128 1.19381 1.19037 0.91112 0.95031 0.94501 0.89306 0.89916 0.90599 0.94315 0.75465 0.93184 0.87072 0.90616 0.87395 0.88987 0.86541 0.86395 0.87523 0.87661 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.80 71.98 0.71 -3.56 16 2 C -0.11 -2.55 4.98 30.59 0.15 -2.40 16 3 C 0.13 3.49 2.54 45.00 0.11 3.61 16 4 H 0.08 2.62 6.93 -2.39 -0.02 2.60 16 5 C 0.08 1.54 6.84 71.98 0.49 2.03 16 6 O -0.57 -8.45 10.02 -148.98 -1.49 -9.94 16 7 N -0.61 -18.64 2.21 -822.58 -1.82 -20.46 16 8 C 0.07 1.62 9.04 127.77 1.16 2.77 16 9 C 0.52 21.00 7.28 87.65 0.64 21.64 16 10 O -0.58 -29.09 15.37 -3.04 -0.05 -29.14 16 11 C -0.07 -2.69 3.69 29.10 0.11 -2.58 16 12 C -0.18 -8.70 4.43 -19.40 -0.09 -8.79 16 13 C -0.10 -4.63 9.66 22.22 0.21 -4.41 16 14 C -0.23 -10.51 10.05 22.46 0.23 -10.28 16 15 C -0.12 -6.26 10.02 22.22 0.22 -6.03 16 16 C -0.18 -10.29 8.67 22.73 0.20 -10.09 16 17 C 0.09 5.00 5.55 -21.29 -0.12 4.88 16 18 C -0.48 -27.04 7.92 23.46 0.19 -26.86 16 19 H 0.06 3.51 6.97 -2.91 -0.02 3.49 16 20 C 0.03 1.58 5.42 85.26 0.46 2.04 16 21 N -0.84 -46.35 10.61 21.83 0.23 -46.12 16 22 Si 0.97 40.67 29.56 68.60 2.03 42.70 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.03 1.04 7.75 -2.38 -0.02 1.02 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.76 6.92 -2.39 -0.02 1.75 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.39 2.30 9.12 -74.06 -0.68 1.62 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.11 2.20 5.23 -2.39 -0.01 2.18 16 36 H 0.08 1.67 6.26 -2.38 -0.01 1.65 16 37 H 0.11 3.53 7.33 -2.39 -0.02 3.51 16 38 H 0.09 3.78 7.17 -2.39 -0.02 3.76 16 39 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 41 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.11 6.32 6.14 -2.91 -0.02 6.30 16 43 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 Total: -1.00 -72.26 346.16 3.91 -68.35 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.34 Total: 32.66 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 4.67 Total: -38.05 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.59 Total: -66.58 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.54 Total: -39.08 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -72.26 3.91 -68.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833336371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.441 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds