Wall clock time and date at job start Tue Mar 31 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47362 * 2 1 4 4 H 1.08998 * 109.46680 * 306.45976 * 3 2 1 5 5 C 1.50698 * 109.47438 * 186.45765 * 3 2 1 6 6 H 1.08004 * 119.99562 * 245.88349 * 5 3 2 7 7 C 1.37874 * 120.00250 * 65.60588 * 5 3 2 8 8 N 1.31512 * 119.99725 * 356.32841 * 7 5 3 9 9 Si 1.86795 * 119.99951 * 176.33171 * 7 5 3 10 10 H 1.48504 * 109.47410 * 94.99926 * 9 7 5 11 11 H 1.48508 * 109.47071 * 214.99457 * 9 7 5 12 12 H 1.48496 * 109.47365 * 334.99128 * 9 7 5 13 13 O 1.45203 * 109.47094 * 66.45387 * 3 2 1 14 14 C 1.34712 * 116.99965 * 270.00281 * 13 3 2 15 15 O 1.21470 * 120.00293 * 0.02562 * 14 13 3 16 16 C 1.47717 * 119.99944 * 179.97438 * 14 13 3 17 17 C 1.40078 * 120.56565 * 1.37449 * 16 14 13 18 18 C 1.38347 * 118.28337 * 179.73219 * 17 16 14 19 19 C 1.38353 * 119.30782 * 0.54403 * 18 17 16 20 20 C 1.50699 * 119.45406 * 179.74130 * 19 18 17 21 21 C 1.53002 * 109.47077 * 274.97856 * 20 19 18 22 22 C 1.52998 * 109.47318 * 34.97954 * 20 19 18 23 23 N 1.31937 * 121.09241 * 359.72444 * 19 18 17 24 24 C 1.31679 * 121.88263 * 359.97438 * 23 19 18 25 25 C 1.50708 * 119.71670 * 180.02562 * 24 23 19 26 26 H 1.09001 * 109.47032 * 299.99862 * 1 2 3 27 27 H 1.09000 * 109.47165 * 60.00428 * 1 2 3 28 28 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47032 * 240.00138 * 2 1 3 30 30 H 1.09007 * 109.47047 * 119.99954 * 2 1 3 31 31 H 0.97007 * 120.00079 * 180.02562 * 8 7 5 32 32 H 1.08006 * 120.85431 * 359.97438 * 17 16 14 33 33 H 1.07995 * 120.34221 * 180.28464 * 18 17 16 34 34 H 1.09001 * 109.47545 * 154.98434 * 20 19 18 35 35 H 1.08995 * 109.47470 * 300.00243 * 21 20 19 36 36 H 1.09003 * 109.47195 * 59.99848 * 21 20 19 37 37 H 1.09001 * 109.47171 * 179.97438 * 21 20 19 38 38 H 1.08992 * 109.46723 * 59.99698 * 22 20 19 39 39 H 1.09001 * 109.47369 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.46784 * 300.00048 * 22 20 19 41 41 H 1.08995 * 109.46865 * 262.30597 * 25 24 23 42 42 H 1.08995 * 109.47151 * 22.30908 * 25 24 23 43 43 H 1.09004 * 109.46797 * 142.31070 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5854 1.9886 -0.8265 5 6 3.5385 1.4455 -0.1598 6 1 4.1667 1.7965 0.6456 7 6 4.1078 0.9949 -1.3319 8 7 3.3482 0.4953 -2.2822 9 14 5.9578 1.0938 -1.5700 10 1 6.5762 -0.2010 -1.1874 11 1 6.2587 1.3840 -2.9951 12 1 6.5095 2.1772 -0.7173 13 8 1.6858 2.0811 1.2550 14 6 0.4991 2.7169 1.3041 15 8 -0.2202 2.7368 0.3255 16 6 0.0722 3.3888 2.5484 17 6 0.9043 3.3969 3.6752 18 6 0.4597 4.0450 4.8138 19 6 -0.7851 4.6487 4.8070 20 6 -1.2751 5.3505 6.0473 21 6 -1.9312 4.3334 6.9833 22 6 -0.0935 6.0114 6.7599 23 7 -1.5502 4.6205 3.7324 24 6 -1.1695 4.0218 2.6231 25 6 -2.0825 4.0198 1.4241 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7487 0.1779 -3.1067 32 1 1.8697 2.9130 3.6544 33 1 1.0762 4.0756 5.7000 34 1 -2.0042 6.1120 5.7700 35 1 -2.7730 3.8626 6.4757 36 1 -1.2022 3.5720 7.2607 37 1 -2.2852 4.8410 7.8806 38 1 0.3738 6.7359 6.0930 39 1 -0.4478 6.5186 7.6573 40 1 0.6355 5.2499 7.0373 41 1 -2.6321 3.0793 1.3875 42 1 -2.7858 4.8489 1.5016 43 1 -1.4897 4.1299 0.5159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835338974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:31 Heat of formation + Delta-G solvation = -73.874700 kcal Electronic energy + Delta-G solvation = -23506.098068 eV Core-core repulsion = 20129.738660 eV Total energy + Delta-G solvation = -3376.359408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73352 -39.25722 -36.28915 -35.47572 -33.63344 -32.76203 -31.56072 -31.24230 -28.01307 -27.37399 -26.98749 -24.85901 -23.25269 -22.34801 -21.52960 -20.19216 -19.58883 -17.50282 -16.98251 -16.35781 -15.82239 -15.56688 -15.43340 -14.67733 -14.60581 -14.16585 -14.05220 -13.33273 -13.29776 -12.95117 -12.88047 -12.84466 -12.36964 -12.20488 -12.07744 -11.89037 -11.53423 -11.44658 -11.36911 -11.29209 -11.17079 -11.14510 -10.99750 -10.67238 -10.28291 -9.84397 -9.76338 -9.72869 -9.40238 -9.22729 -8.89944 -8.80424 -8.46491 -6.22154 -4.28767 0.70914 1.26826 3.06391 3.22077 3.28219 3.31816 3.54705 3.88884 4.03088 4.31394 4.50666 4.78244 4.87387 4.90330 4.97301 5.07313 5.10859 5.31046 5.37282 5.51222 5.55627 5.65283 5.69570 5.80169 5.88490 5.93746 5.97919 6.01112 6.10182 6.20574 6.24501 6.28158 6.38413 6.44304 6.67931 6.85442 6.94284 7.13969 7.21139 7.58033 7.67972 7.87835 7.94739 8.11204 8.57676 8.85099 9.36712 10.85433 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.003839 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.327335 B = 7290.941053 C = 8006.790799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.222 3.778 4 H 0.052 0.948 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.351 6.351 14 C 0.502 3.498 15 O -0.504 6.504 16 C -0.175 4.175 17 C -0.014 4.014 18 C -0.194 4.194 19 C 0.159 3.841 20 C -0.048 4.048 21 C -0.141 4.141 22 C -0.148 4.148 23 N -0.493 5.493 24 C 0.193 3.807 25 C -0.115 4.115 26 H 0.032 0.968 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 7.136 15.346 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.267 6.267 14 C 0.346 3.654 15 O -0.396 6.396 16 C -0.179 4.179 17 C -0.040 4.040 18 C -0.214 4.214 19 C 0.022 3.978 20 C -0.068 4.068 21 C -0.199 4.199 22 C -0.206 4.206 23 N -0.203 5.203 24 C 0.055 3.945 25 C -0.172 4.172 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.121 0.879 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.684 7.426 14.849 18.736 hybrid contribution 1.790 -0.552 -0.307 1.898 sum -6.894 6.874 14.542 17.500 Atomic orbital electron populations 1.21862 0.98236 0.99056 1.00883 1.21993 0.92797 0.99306 1.02902 1.20726 0.95440 0.88879 0.77979 0.93057 1.21015 0.89692 1.44118 1.01277 0.91354 1.24886 0.99119 0.94623 0.95247 1.69924 1.35440 1.40114 1.06844 0.86294 0.83910 0.78562 0.77593 1.20435 1.20898 1.19580 1.86522 1.33675 1.62569 1.43957 1.20652 0.81125 0.76790 0.86851 1.90706 1.53882 1.57950 1.37040 1.20268 0.97391 1.05474 0.94734 1.22018 0.99108 0.92119 0.90720 1.21919 0.97946 1.01771 0.99771 1.21422 0.90221 0.92767 0.93434 1.20090 0.98334 0.97496 0.90833 1.21799 1.00814 0.98625 0.98631 1.21934 0.97543 1.00752 1.00343 1.67466 1.34839 1.18916 0.99097 1.21502 0.91094 0.88433 0.93473 1.21157 0.98453 1.02669 0.94895 0.94862 0.92675 0.94831 0.87925 0.93968 0.92365 0.83050 0.84168 0.89135 0.92225 0.92359 0.91833 0.92220 0.91808 0.91944 0.90035 0.91390 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.59 37.16 0.32 -2.77 16 2 C -0.13 -3.21 5.53 -26.73 -0.15 -3.36 16 3 C 0.22 5.78 2.17 -27.88 -0.06 5.72 16 4 H 0.05 1.48 7.16 -51.93 -0.37 1.11 16 5 C -0.52 -14.37 8.83 -34.44 -0.30 -14.67 16 6 H 0.07 1.85 7.82 -52.48 -0.41 1.44 16 7 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 8 N -0.89 -24.73 11.58 55.43 0.64 -24.09 16 9 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 O -0.35 -8.18 9.15 -40.53 -0.37 -8.55 16 14 C 0.50 10.52 6.39 34.60 0.22 10.74 16 15 O -0.50 -11.15 10.46 -19.24 -0.20 -11.35 16 16 C -0.18 -3.06 5.89 -104.84 -0.62 -3.68 16 17 C -0.01 -0.21 9.74 -38.85 -0.38 -0.59 16 18 C -0.19 -2.38 9.16 -39.50 -0.36 -2.74 16 19 C 0.16 2.02 5.79 -82.50 -0.48 1.55 16 20 C -0.05 -0.45 3.23 -91.77 -0.30 -0.75 16 21 C -0.14 -1.15 9.18 37.16 0.34 -0.80 16 22 C -0.15 -1.09 8.61 37.16 0.32 -0.77 16 23 N -0.49 -7.40 10.17 -5.40 -0.05 -7.46 16 24 C 0.19 3.14 6.82 -82.16 -0.56 2.58 16 25 C -0.12 -1.74 8.96 36.01 0.32 -1.42 16 26 H 0.03 0.70 6.03 -51.93 -0.31 0.38 16 27 H 0.05 1.24 7.87 -51.93 -0.41 0.83 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.10 2.71 6.27 -51.93 -0.33 2.38 16 30 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.15 2.15 7.70 -52.48 -0.40 1.75 16 33 H 0.14 1.29 6.29 -52.49 -0.33 0.96 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.42 6.48 -51.93 -0.34 0.08 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.11 1.86 5.70 -51.93 -0.30 1.57 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -29.47 347.47 -8.10 -37.58 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.56 Total: 2.22 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.78 Total: -9.35 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.59 Total: -31.55 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.57 Total: -19.90 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.47 -8.10 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.297 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds