Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47362 * 2 1 4 4 H 1.08998 * 109.46680 * 306.45976 * 3 2 1 5 5 C 1.50698 * 109.47438 * 186.45765 * 3 2 1 6 6 H 1.08004 * 119.99562 * 245.88349 * 5 3 2 7 7 C 1.37874 * 120.00250 * 65.60588 * 5 3 2 8 8 N 1.31512 * 119.99725 * 356.32841 * 7 5 3 9 9 Si 1.86795 * 119.99951 * 176.33171 * 7 5 3 10 10 H 1.48504 * 109.47410 * 94.99926 * 9 7 5 11 11 H 1.48508 * 109.47071 * 214.99457 * 9 7 5 12 12 H 1.48496 * 109.47365 * 334.99128 * 9 7 5 13 13 O 1.45203 * 109.47094 * 66.45387 * 3 2 1 14 14 C 1.34712 * 116.99965 * 270.00281 * 13 3 2 15 15 O 1.21470 * 120.00293 * 0.02562 * 14 13 3 16 16 C 1.47717 * 119.99944 * 179.97438 * 14 13 3 17 17 C 1.40078 * 120.56565 * 1.37449 * 16 14 13 18 18 C 1.38347 * 118.28337 * 179.73219 * 17 16 14 19 19 C 1.38353 * 119.30782 * 0.54403 * 18 17 16 20 20 C 1.50699 * 119.45406 * 179.74130 * 19 18 17 21 21 C 1.53002 * 109.47077 * 274.97856 * 20 19 18 22 22 C 1.52998 * 109.47318 * 34.97954 * 20 19 18 23 23 N 1.31937 * 121.09241 * 359.72444 * 19 18 17 24 24 C 1.31679 * 121.88263 * 359.97438 * 23 19 18 25 25 C 1.50708 * 119.71670 * 180.02562 * 24 23 19 26 26 H 1.09001 * 109.47032 * 299.99862 * 1 2 3 27 27 H 1.09000 * 109.47165 * 60.00428 * 1 2 3 28 28 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47032 * 240.00138 * 2 1 3 30 30 H 1.09007 * 109.47047 * 119.99954 * 2 1 3 31 31 H 0.97007 * 120.00079 * 180.02562 * 8 7 5 32 32 H 1.08006 * 120.85431 * 359.97438 * 17 16 14 33 33 H 1.07995 * 120.34221 * 180.28464 * 18 17 16 34 34 H 1.09001 * 109.47545 * 154.98434 * 20 19 18 35 35 H 1.08995 * 109.47470 * 300.00243 * 21 20 19 36 36 H 1.09003 * 109.47195 * 59.99848 * 21 20 19 37 37 H 1.09001 * 109.47171 * 179.97438 * 21 20 19 38 38 H 1.08992 * 109.46723 * 59.99698 * 22 20 19 39 39 H 1.09001 * 109.47369 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.46784 * 300.00048 * 22 20 19 41 41 H 1.08995 * 109.46865 * 262.30597 * 25 24 23 42 42 H 1.08995 * 109.47151 * 22.30908 * 25 24 23 43 43 H 1.09004 * 109.46797 * 142.31070 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5854 1.9886 -0.8265 5 6 3.5385 1.4455 -0.1598 6 1 4.1667 1.7965 0.6456 7 6 4.1078 0.9949 -1.3319 8 7 3.3482 0.4953 -2.2822 9 14 5.9578 1.0938 -1.5700 10 1 6.5762 -0.2010 -1.1874 11 1 6.2587 1.3840 -2.9951 12 1 6.5095 2.1772 -0.7173 13 8 1.6858 2.0811 1.2550 14 6 0.4991 2.7169 1.3041 15 8 -0.2202 2.7368 0.3255 16 6 0.0722 3.3888 2.5484 17 6 0.9043 3.3969 3.6752 18 6 0.4597 4.0450 4.8138 19 6 -0.7851 4.6487 4.8070 20 6 -1.2751 5.3505 6.0473 21 6 -1.9312 4.3334 6.9833 22 6 -0.0935 6.0114 6.7599 23 7 -1.5502 4.6205 3.7324 24 6 -1.1695 4.0218 2.6231 25 6 -2.0825 4.0198 1.4241 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7487 0.1779 -3.1067 32 1 1.8697 2.9130 3.6544 33 1 1.0762 4.0756 5.7000 34 1 -2.0042 6.1120 5.7700 35 1 -2.7730 3.8626 6.4757 36 1 -1.2022 3.5720 7.2607 37 1 -2.2852 4.8410 7.8806 38 1 0.3738 6.7359 6.0930 39 1 -0.4478 6.5186 7.6573 40 1 0.6355 5.2499 7.0373 41 1 -2.6321 3.0793 1.3875 42 1 -2.7858 4.8489 1.5016 43 1 -1.4897 4.1299 0.5159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835338974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -88.833276 kcal Electronic energy + Delta-G solvation = -23506.746720 eV Core-core repulsion = 20129.738660 eV Total energy + Delta-G solvation = -3377.008061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.02876 -40.81214 -37.83329 -36.60272 -35.54276 -34.04725 -33.36315 -32.48659 -29.53938 -28.75390 -27.89079 -26.07822 -25.12117 -23.51519 -23.02027 -21.62271 -21.05074 -19.17591 -18.61603 -17.82586 -17.43781 -17.08223 -16.71256 -16.44281 -15.70751 -15.34828 -15.03208 -14.82368 -14.74697 -14.28247 -14.08679 -13.98839 -13.87657 -13.46073 -13.33461 -13.24200 -13.18021 -12.95513 -12.82803 -12.79638 -12.55235 -12.24108 -12.13593 -12.04912 -11.85649 -11.75846 -11.44228 -11.11947 -10.94403 -10.88904 -10.57518 -10.48885 -9.95855 -8.28907 -6.44752 -0.52764 0.12357 1.41130 1.42901 1.54352 1.58015 1.91668 2.40138 2.64263 3.00949 3.02020 3.54203 3.63902 3.75740 3.97073 4.14604 4.17627 4.28064 4.36299 4.38540 4.47021 4.53111 4.64892 4.67376 4.69687 4.82225 4.84365 4.89371 4.96084 5.00483 5.05257 5.07237 5.16999 5.21277 5.22813 5.35209 5.39759 5.45403 5.50179 5.59055 5.63979 5.93417 6.10620 6.59881 6.80141 6.94693 7.26571 8.78851 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.003839 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.327335 B = 7290.941053 C = 8006.790799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 C 0.227 3.773 4 H 0.012 0.988 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.979 3.021 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.265 1.265 13 O -0.358 6.358 14 C 0.497 3.503 15 O -0.524 6.524 16 C -0.203 4.203 17 C -0.018 4.018 18 C -0.180 4.180 19 C 0.163 3.837 20 C -0.047 4.047 21 C -0.138 4.138 22 C -0.146 4.146 23 N -0.504 5.504 24 C 0.186 3.814 25 C -0.110 4.110 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.270 0.730 32 H 0.155 0.845 33 H 0.179 0.821 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 7.781 18.116 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.030 0.970 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.802 3.198 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.190 1.190 13 O -0.274 6.274 14 C 0.343 3.657 15 O -0.416 6.416 16 C -0.206 4.206 17 C -0.043 4.043 18 C -0.200 4.200 19 C 0.025 3.975 20 C -0.066 4.066 21 C -0.196 4.196 22 C -0.203 4.203 23 N -0.214 5.214 24 C 0.049 3.951 25 C -0.166 4.166 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.173 0.827 33 H 0.196 0.804 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.189 8.077 17.633 21.053 hybrid contribution 1.539 -0.667 -1.060 1.984 sum -6.650 7.410 16.573 19.334 Atomic orbital electron populations 1.21707 0.96240 1.00572 1.00157 1.21838 0.94527 0.98043 1.01931 1.20420 0.94890 0.89366 0.77970 0.96979 1.21307 0.90513 1.45012 1.01901 0.91545 1.25788 1.03984 0.93771 0.94646 1.70043 1.37483 1.40318 1.07250 0.85230 0.77924 0.79008 0.77627 1.19278 1.20385 1.18972 1.86496 1.35277 1.63231 1.42409 1.21301 0.80059 0.76271 0.88065 1.90699 1.54098 1.58637 1.38181 1.20132 0.98924 1.07497 0.94056 1.22164 0.98946 0.92400 0.90795 1.22276 0.97932 0.99856 0.99887 1.22179 0.90039 0.91522 0.93776 1.20240 0.99310 0.97534 0.89555 1.21799 1.00322 0.98518 0.98954 1.21948 0.96778 1.00886 1.00728 1.67562 1.35430 1.19072 0.99325 1.21571 0.90775 0.88517 0.94269 1.21049 0.98346 1.03428 0.93820 0.94665 0.94265 0.92066 0.90130 0.93441 0.92050 0.82742 0.80402 0.89305 0.93703 0.91809 0.89533 0.92837 0.89781 0.90858 0.89996 0.89548 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.59 71.98 0.62 -5.08 16 2 C -0.13 -6.28 5.53 30.59 0.17 -6.11 16 3 C 0.23 12.30 2.17 29.85 0.06 12.36 16 4 H 0.01 0.75 7.16 -2.39 -0.02 0.74 16 5 C -0.55 -31.00 8.83 25.60 0.23 -30.77 16 6 H 0.07 3.67 7.82 -2.91 -0.02 3.64 16 7 C 0.02 1.00 5.33 84.65 0.45 1.45 16 8 N -0.91 -52.19 11.58 21.45 0.25 -51.94 16 9 Si 0.98 42.68 29.54 68.60 2.03 44.71 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 O -0.36 -17.28 9.15 -56.22 -0.51 -17.80 16 14 C 0.50 21.69 6.39 70.33 0.45 22.14 16 15 O -0.52 -24.45 10.46 19.93 0.21 -24.24 16 16 C -0.20 -7.17 5.89 -20.00 -0.12 -7.29 16 17 C -0.02 -0.51 9.74 22.74 0.22 -0.29 16 18 C -0.18 -3.94 9.16 22.32 0.20 -3.74 16 19 C 0.16 3.76 5.79 42.57 0.25 4.01 16 20 C -0.05 -0.73 3.23 -11.54 -0.04 -0.77 16 21 C -0.14 -1.79 9.18 71.98 0.66 -1.13 16 22 C -0.15 -1.57 8.61 71.98 0.62 -0.95 16 23 N -0.50 -14.55 10.17 -171.01 -1.74 -16.29 16 24 C 0.19 6.08 6.82 42.91 0.29 6.38 16 25 C -0.11 -3.41 8.96 71.24 0.64 -2.77 16 26 H 0.03 1.50 6.03 -2.39 -0.01 1.49 16 27 H 0.04 1.82 7.87 -2.39 -0.02 1.80 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.08 4.40 6.27 -2.39 -0.01 4.38 16 30 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 32 H 0.15 4.29 7.70 -2.91 -0.02 4.26 16 33 H 0.18 2.51 6.29 -2.91 -0.02 2.49 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.64 6.48 -2.39 -0.02 0.63 16 41 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.09 3.14 5.70 -2.39 -0.01 3.13 16 Total: -1.00 -65.81 347.47 5.94 -59.87 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 1.00 Total: 18.26 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 4.71 Total: -12.57 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -1.49 Total: -68.23 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.31 Total: -42.04 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -65.81 5.94 -59.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.959 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds