Wall clock time and date at job start Tue Mar 31 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46780 * 2 1 4 4 H 1.09000 * 109.47047 * 55.00148 * 3 2 1 5 5 C 1.50701 * 109.47132 * 174.99685 * 3 2 1 6 6 H 1.08005 * 120.00015 * 120.00329 * 5 3 2 7 7 C 1.37871 * 120.00101 * 300.00352 * 5 3 2 8 8 N 1.31516 * 120.00388 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99927 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47401 * 59.99729 * 9 7 5 11 11 H 1.48500 * 109.46809 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46869 * 299.99383 * 9 7 5 13 13 O 1.45201 * 109.47276 * 294.99941 * 3 2 1 14 14 C 1.34710 * 117.00099 * 89.99916 * 13 3 2 15 15 O 1.21469 * 120.00012 * 0.02562 * 14 13 3 16 16 C 1.47718 * 119.99978 * 180.02562 * 14 13 3 17 17 C 1.40072 * 120.56262 * 353.77920 * 16 14 13 18 18 C 1.38345 * 118.27986 * 179.73769 * 17 16 14 19 19 C 1.38365 * 119.31248 * 0.53598 * 18 17 16 20 20 C 1.50693 * 119.45706 * 179.74764 * 19 18 17 21 21 C 1.53004 * 109.47162 * 274.97378 * 20 19 18 22 22 C 1.53000 * 109.47281 * 34.97696 * 20 19 18 23 23 N 1.31930 * 121.08323 * 359.72313 * 19 18 17 24 24 C 1.31682 * 121.89163 * 359.97438 * 23 19 18 25 25 C 1.50697 * 119.72360 * 180.02562 * 24 23 19 26 26 H 1.08992 * 109.47316 * 299.99532 * 1 2 3 27 27 H 1.09007 * 109.46255 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46858 * 60.00553 * 1 2 3 29 29 H 1.09004 * 109.47355 * 119.99990 * 2 1 3 30 30 H 1.08993 * 109.47724 * 240.00122 * 2 1 3 31 31 H 0.96992 * 120.00326 * 180.02562 * 8 7 5 32 32 H 1.07995 * 120.86440 * 359.97090 * 17 16 14 33 33 H 1.08004 * 120.34426 * 180.27809 * 18 17 16 34 34 H 1.09005 * 109.46919 * 154.97903 * 20 19 18 35 35 H 1.08999 * 109.46377 * 60.00313 * 21 20 19 36 36 H 1.08993 * 109.46868 * 179.97438 * 21 20 19 37 37 H 1.08994 * 109.47266 * 300.00355 * 21 20 19 38 38 H 1.09000 * 109.46732 * 180.02562 * 22 20 19 39 39 H 1.08995 * 109.46875 * 299.99638 * 22 20 19 40 40 H 1.09004 * 109.46800 * 60.00110 * 22 20 19 41 41 H 1.09002 * 109.47332 * 263.42421 * 25 24 23 42 42 H 1.09000 * 109.47388 * 23.41927 * 25 24 23 43 43 H 1.09003 * 109.47444 * 143.41944 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8891 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8816 1.3819 10 1 6.4994 2.2818 1.3823 11 1 6.3977 0.2180 2.6510 12 1 6.5975 0.1476 0.2350 13 8 1.6558 2.0917 -1.2407 14 6 0.4684 2.7277 -1.2560 15 8 -0.2269 2.7400 -0.2601 16 6 0.0118 3.4101 -2.4840 17 6 0.8566 3.5153 -3.5964 18 6 0.3787 4.1593 -4.7237 19 6 -0.9017 4.6836 -4.7128 20 6 -1.4234 5.3907 -5.9370 21 6 -0.9774 6.8540 -5.9097 22 6 -0.8709 4.7123 -7.1921 23 7 -1.6734 4.5742 -3.6484 24 6 -1.2668 3.9655 -2.5538 25 6 -2.1893 3.8682 -1.3662 26 1 -0.3633 0.5137 0.8899 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0603 2.9503 32 1 1.8537 3.1011 -3.5760 33 1 1.0002 4.2554 -5.6018 34 1 -2.5124 5.3430 -5.9476 35 1 0.1115 6.9016 -5.8990 36 1 -1.3544 7.3653 -6.7954 37 1 -1.3710 7.3372 -5.0155 38 1 -1.2480 5.2242 -8.0775 39 1 0.2180 4.7601 -7.1814 40 1 -1.1888 3.6699 -7.2115 41 1 -1.9636 4.6708 -0.6640 42 1 -3.2229 3.9581 -1.7006 43 1 -2.0489 2.9054 -0.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835338976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:34 Heat of formation + Delta-G solvation = -73.693594 kcal Electronic energy + Delta-G solvation = -23513.059151 eV Core-core repulsion = 20136.707596 eV Total energy + Delta-G solvation = -3376.351555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.73594 -39.26012 -36.28672 -35.47616 -33.65852 -32.76974 -31.53545 -31.22704 -28.00620 -27.37579 -27.00193 -24.86251 -23.25366 -22.34698 -21.52523 -20.19666 -19.57633 -17.49202 -16.99858 -16.34011 -15.78370 -15.62902 -15.42385 -14.66632 -14.60458 -14.17814 -14.05477 -13.38093 -13.25940 -12.97550 -12.86100 -12.76941 -12.37618 -12.29049 -12.10571 -11.81465 -11.49987 -11.44936 -11.37121 -11.28608 -11.21677 -11.15022 -10.95665 -10.68548 -10.29947 -9.80967 -9.79607 -9.70680 -9.41877 -9.26857 -8.86640 -8.79606 -8.47689 -6.21123 -4.28557 0.71127 1.26535 3.06374 3.24117 3.27763 3.29483 3.54554 3.88142 4.02750 4.31248 4.50506 4.77869 4.87531 4.90032 4.97250 5.07197 5.10774 5.31133 5.37506 5.51140 5.55554 5.65139 5.69493 5.80259 5.88149 5.93429 5.97633 6.01251 6.10170 6.20656 6.24548 6.28056 6.38105 6.44501 6.67538 6.86378 6.93880 7.13901 7.21998 7.58278 7.70593 7.90247 7.94440 8.12314 8.57790 8.84200 9.36669 10.85571 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.003837 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.784218 B = 7295.025725 C = 8016.408353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.351 6.351 14 C 0.501 3.499 15 O -0.504 6.504 16 C -0.175 4.175 17 C -0.014 4.014 18 C -0.194 4.194 19 C 0.159 3.841 20 C -0.048 4.048 21 C -0.141 4.141 22 C -0.148 4.148 23 N -0.493 5.493 24 C 0.192 3.808 25 C -0.111 4.111 26 H 0.054 0.946 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.041 0.959 31 H 0.267 0.733 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 7.781 -14.857 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.267 6.267 14 C 0.345 3.655 15 O -0.396 6.396 16 C -0.178 4.178 17 C -0.040 4.040 18 C -0.214 4.214 19 C 0.021 3.979 20 C -0.067 4.067 21 C -0.199 4.199 22 C -0.206 4.206 23 N -0.203 5.203 24 C 0.054 3.946 25 C -0.167 4.167 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.127 0.873 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.170 0.830 33 H 0.158 0.842 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.887 7.997 -14.356 18.682 hybrid contribution 1.856 -0.479 0.259 1.934 sum -7.031 7.518 -14.097 17.455 Atomic orbital electron populations 1.21866 0.98362 0.99079 1.00729 1.22023 0.92670 0.99296 1.03382 1.20709 0.95010 0.88752 0.78447 0.93337 1.20989 0.89616 1.39185 1.06325 0.91415 1.24873 0.99222 0.94712 0.95034 1.69872 1.35496 1.37681 1.09432 0.86345 0.83871 0.78494 0.77502 1.19993 1.21004 1.19933 1.86519 1.33459 1.62385 1.44339 1.20643 0.81138 0.76819 0.86914 1.90727 1.54689 1.59051 1.35101 1.20273 0.96727 1.05608 0.95193 1.22013 0.99772 0.91613 0.90588 1.21924 0.97305 1.02345 0.99804 1.21421 0.90340 0.92623 0.93476 1.20090 1.01513 0.94778 0.90364 1.21799 1.01641 0.94149 1.02296 1.21935 1.01518 1.00790 0.96322 1.67455 1.36337 1.16964 0.99537 1.21488 0.91122 0.88511 0.93457 1.21080 0.96779 1.05641 0.93233 0.92680 0.94788 0.95022 0.87272 0.94002 0.92285 0.83049 0.84162 0.89138 0.92348 0.91832 0.92210 0.91807 0.91940 0.92234 0.89826 0.91406 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.56 37.16 0.32 -2.77 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.82 2.25 -27.88 -0.06 5.76 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.39 8.90 -34.44 -0.31 -14.70 16 6 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.71 11.29 55.43 0.63 -24.09 16 9 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 O -0.35 -8.19 9.15 -40.52 -0.37 -8.56 16 14 C 0.50 10.52 6.28 34.60 0.22 10.73 16 15 O -0.50 -11.17 10.56 -19.24 -0.20 -11.38 16 16 C -0.17 -3.05 5.89 -104.84 -0.62 -3.67 16 17 C -0.01 -0.21 9.74 -38.85 -0.38 -0.59 16 18 C -0.19 -2.38 9.16 -39.50 -0.36 -2.74 16 19 C 0.16 2.02 5.79 -82.51 -0.48 1.54 16 20 C -0.05 -0.45 3.23 -91.77 -0.30 -0.75 16 21 C -0.14 -1.16 9.18 37.16 0.34 -0.81 16 22 C -0.15 -1.08 8.61 37.16 0.32 -0.76 16 23 N -0.49 -7.39 10.17 -5.41 -0.05 -7.44 16 24 C 0.19 3.13 6.82 -82.16 -0.56 2.57 16 25 C -0.11 -1.67 8.88 36.00 0.32 -1.35 16 26 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 29 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.15 2.16 7.72 -52.49 -0.41 1.75 16 33 H 0.14 1.29 6.29 -52.48 -0.33 0.96 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.42 6.48 -51.93 -0.34 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.75 5.85 -51.93 -0.30 1.45 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -29.46 346.94 -8.13 -37.58 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.55 Total: 2.30 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.79 Total: -9.39 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.57 Total: -31.53 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.57 Total: -19.94 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.46 -8.13 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.109 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds