Wall clock time and date at job start Tue Mar 31 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46780 * 2 1 4 4 H 1.09000 * 109.47047 * 55.00148 * 3 2 1 5 5 C 1.50701 * 109.47132 * 174.99685 * 3 2 1 6 6 H 1.08005 * 120.00015 * 120.00329 * 5 3 2 7 7 C 1.37871 * 120.00101 * 300.00352 * 5 3 2 8 8 N 1.31516 * 120.00388 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99927 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47401 * 59.99729 * 9 7 5 11 11 H 1.48500 * 109.46809 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46869 * 299.99383 * 9 7 5 13 13 O 1.45201 * 109.47276 * 294.99941 * 3 2 1 14 14 C 1.34710 * 117.00099 * 89.99916 * 13 3 2 15 15 O 1.21469 * 120.00012 * 0.02562 * 14 13 3 16 16 C 1.47718 * 119.99978 * 180.02562 * 14 13 3 17 17 C 1.40072 * 120.56262 * 353.77920 * 16 14 13 18 18 C 1.38345 * 118.27986 * 179.73769 * 17 16 14 19 19 C 1.38365 * 119.31248 * 0.53598 * 18 17 16 20 20 C 1.50693 * 119.45706 * 179.74764 * 19 18 17 21 21 C 1.53004 * 109.47162 * 274.97378 * 20 19 18 22 22 C 1.53000 * 109.47281 * 34.97696 * 20 19 18 23 23 N 1.31930 * 121.08323 * 359.72313 * 19 18 17 24 24 C 1.31682 * 121.89163 * 359.97438 * 23 19 18 25 25 C 1.50697 * 119.72360 * 180.02562 * 24 23 19 26 26 H 1.08992 * 109.47316 * 299.99532 * 1 2 3 27 27 H 1.09007 * 109.46255 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46858 * 60.00553 * 1 2 3 29 29 H 1.09004 * 109.47355 * 119.99990 * 2 1 3 30 30 H 1.08993 * 109.47724 * 240.00122 * 2 1 3 31 31 H 0.96992 * 120.00326 * 180.02562 * 8 7 5 32 32 H 1.07995 * 120.86440 * 359.97090 * 17 16 14 33 33 H 1.08004 * 120.34426 * 180.27809 * 18 17 16 34 34 H 1.09005 * 109.46919 * 154.97903 * 20 19 18 35 35 H 1.08999 * 109.46377 * 60.00313 * 21 20 19 36 36 H 1.08993 * 109.46868 * 179.97438 * 21 20 19 37 37 H 1.08994 * 109.47266 * 300.00355 * 21 20 19 38 38 H 1.09000 * 109.46732 * 180.02562 * 22 20 19 39 39 H 1.08995 * 109.46875 * 299.99638 * 22 20 19 40 40 H 1.09004 * 109.46800 * 60.00110 * 22 20 19 41 41 H 1.09002 * 109.47332 * 263.42421 * 25 24 23 42 42 H 1.09000 * 109.47388 * 23.41927 * 25 24 23 43 43 H 1.09003 * 109.47444 * 143.41944 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8891 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8816 1.3819 10 1 6.4994 2.2818 1.3823 11 1 6.3977 0.2180 2.6510 12 1 6.5975 0.1476 0.2350 13 8 1.6558 2.0917 -1.2407 14 6 0.4684 2.7277 -1.2560 15 8 -0.2269 2.7400 -0.2601 16 6 0.0118 3.4101 -2.4840 17 6 0.8566 3.5153 -3.5964 18 6 0.3787 4.1593 -4.7237 19 6 -0.9017 4.6836 -4.7128 20 6 -1.4234 5.3907 -5.9370 21 6 -0.9774 6.8540 -5.9097 22 6 -0.8709 4.7123 -7.1921 23 7 -1.6734 4.5742 -3.6484 24 6 -1.2668 3.9655 -2.5538 25 6 -2.1893 3.8682 -1.3662 26 1 -0.3633 0.5137 0.8899 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0603 2.9503 32 1 1.8537 3.1011 -3.5760 33 1 1.0002 4.2554 -5.6018 34 1 -2.5124 5.3430 -5.9476 35 1 0.1115 6.9016 -5.8990 36 1 -1.3544 7.3653 -6.7954 37 1 -1.3710 7.3372 -5.0155 38 1 -1.2480 5.2242 -8.0775 39 1 0.2180 4.7601 -7.1814 40 1 -1.1888 3.6699 -7.2115 41 1 -1.9636 4.6708 -0.6640 42 1 -3.2229 3.9581 -1.7006 43 1 -2.0489 2.9054 -0.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835338976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:34 Heat of formation + Delta-G solvation = -88.625595 kcal Electronic energy + Delta-G solvation = -23513.706651 eV Core-core repulsion = 20136.707596 eV Total energy + Delta-G solvation = -3376.999055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03336 -40.81787 -37.83386 -36.60632 -35.57236 -34.04975 -33.31672 -32.49713 -29.53564 -28.76677 -27.89183 -26.08631 -25.11968 -23.51405 -23.02083 -21.62829 -21.04257 -19.16394 -18.63278 -17.81830 -17.35078 -17.20051 -16.71238 -16.42773 -15.70013 -15.28851 -15.12119 -14.80897 -14.76506 -14.21676 -14.09782 -14.02716 -13.87990 -13.36174 -13.34966 -13.23079 -13.16775 -13.08941 -12.81823 -12.75308 -12.54647 -12.24358 -12.14255 -12.04930 -11.85527 -11.75910 -11.44206 -11.15709 -10.94285 -10.84443 -10.57647 -10.51723 -9.96592 -8.27631 -6.44603 -0.52642 0.11958 1.41503 1.44982 1.52772 1.57374 1.91439 2.40358 2.63666 3.00330 3.02367 3.53847 3.63556 3.75841 3.96896 4.14503 4.17538 4.27958 4.36633 4.38479 4.46771 4.53316 4.64864 4.67368 4.68619 4.82070 4.84189 4.89269 4.95825 5.00144 5.05252 5.07799 5.17031 5.20276 5.22719 5.35496 5.39605 5.45454 5.49944 5.58456 5.66026 5.95794 6.10177 6.59064 6.79767 6.94181 7.26518 8.78921 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.003837 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.784218 B = 7295.025725 C = 8016.408353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.228 3.772 4 H 0.010 0.990 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.264 1.264 13 O -0.357 6.357 14 C 0.496 3.504 15 O -0.524 6.524 16 C -0.202 4.202 17 C -0.018 4.018 18 C -0.180 4.180 19 C 0.163 3.837 20 C -0.047 4.047 21 C -0.139 4.139 22 C -0.146 4.146 23 N -0.503 5.503 24 C 0.186 3.814 25 C -0.106 4.106 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.271 0.729 32 H 0.155 0.845 33 H 0.179 0.821 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 8.537 -17.588 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.188 1.188 13 O -0.274 6.274 14 C 0.342 3.658 15 O -0.416 6.416 16 C -0.206 4.206 17 C -0.044 4.044 18 C -0.199 4.199 19 C 0.025 3.975 20 C -0.066 4.066 21 C -0.196 4.196 22 C -0.203 4.203 23 N -0.213 5.213 24 C 0.048 3.952 25 C -0.162 4.162 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.172 0.828 33 H 0.196 0.804 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.404 8.759 -17.102 20.972 hybrid contribution 1.605 -0.622 1.008 1.995 sum -6.799 8.137 -16.094 19.273 Atomic orbital electron populations 1.21712 0.96298 1.00588 1.00083 1.21868 0.94462 0.98065 1.02325 1.20406 0.94551 0.89230 0.78371 0.97251 1.21293 0.90448 1.40137 1.07008 0.91558 1.25778 1.04152 0.93843 0.94332 1.69998 1.37498 1.37817 1.09804 0.85282 0.77772 0.78747 0.77915 1.19458 1.20265 1.18819 1.86495 1.35041 1.63036 1.42824 1.21293 0.80070 0.76301 0.88117 1.90715 1.54888 1.59762 1.36258 1.20137 0.98093 1.07716 0.94613 1.22157 0.99637 0.91891 0.90671 1.22282 0.97388 1.00388 0.99861 1.22179 0.90328 0.91260 0.93753 1.20241 1.01552 0.95309 0.89519 1.21801 1.01965 0.93158 1.02715 1.21947 1.02154 1.00459 0.95760 1.67553 1.36890 1.17153 0.99741 1.21560 0.90750 0.88643 0.94229 1.20984 0.97863 1.04355 0.93040 0.94159 0.92070 0.94792 0.89408 0.93709 0.92004 0.82778 0.80399 0.89247 0.91864 0.89507 0.93747 0.89788 0.90897 0.92744 0.90081 0.89448 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.56 71.98 0.62 -5.10 16 2 C -0.13 -6.52 5.49 30.59 0.17 -6.35 16 3 C 0.23 12.39 2.25 29.85 0.07 12.45 16 4 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 5 C -0.55 -31.13 8.90 25.60 0.23 -30.90 16 6 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.04 11.29 21.45 0.24 -51.79 16 9 Si 0.98 42.58 29.54 68.60 2.03 44.60 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 13 O -0.36 -17.33 9.15 -56.19 -0.51 -17.85 16 14 C 0.50 21.71 6.28 70.33 0.44 22.15 16 15 O -0.52 -24.51 10.56 19.94 0.21 -24.30 16 16 C -0.20 -7.17 5.89 -20.00 -0.12 -7.28 16 17 C -0.02 -0.53 9.74 22.74 0.22 -0.30 16 18 C -0.18 -3.94 9.16 22.33 0.20 -3.74 16 19 C 0.16 3.76 5.79 42.57 0.25 4.00 16 20 C -0.05 -0.73 3.23 -11.54 -0.04 -0.77 16 21 C -0.14 -1.83 9.18 71.98 0.66 -1.17 16 22 C -0.15 -1.55 8.61 71.98 0.62 -0.93 16 23 N -0.50 -14.51 10.17 -171.02 -1.74 -16.25 16 24 C 0.19 6.06 6.82 42.90 0.29 6.36 16 25 C -0.11 -3.28 8.88 71.24 0.63 -2.65 16 26 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 27 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.03 1.45 6.06 -2.39 -0.01 1.44 16 29 H 0.09 4.82 5.95 -2.38 -0.01 4.81 16 30 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.15 4.30 7.72 -2.91 -0.02 4.28 16 33 H 0.18 2.52 6.29 -2.91 -0.02 2.50 16 34 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.63 6.48 -2.39 -0.02 0.62 16 40 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.08 2.97 5.85 -2.39 -0.01 2.96 16 Total: -1.00 -65.75 346.94 5.92 -59.83 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.00 Total: 18.49 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.69 Total: -12.74 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -1.50 Total: -68.04 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.30 Total: -42.14 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.75 5.92 -59.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.791 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds