Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31513 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47173 * 119.99725 * 9 7 5 12 12 H 1.48502 * 109.47134 * 239.99840 * 9 7 5 13 13 O 1.45202 * 109.46961 * 295.00042 * 3 2 1 14 14 C 1.34710 * 116.99623 * 90.00461 * 13 3 2 15 15 O 1.21473 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.47725 * 119.99570 * 180.27322 * 14 13 3 17 17 C 1.39645 * 120.15275 * 359.44519 * 16 14 13 18 18 C 1.37921 * 119.84858 * 179.69905 * 17 16 14 19 19 C 1.38389 * 120.14896 * 0.58091 * 18 17 16 20 20 C 1.38340 * 120.30335 * 359.71669 * 19 18 17 21 21 C 1.50705 * 119.92731 * 180.02562 * 20 19 18 22 22 N 1.46902 * 109.47352 * 269.98034 * 21 20 19 23 23 C 1.46897 * 111.00089 * 169.99698 * 22 21 20 24 24 C 1.46901 * 110.99668 * 293.95461 * 22 21 20 25 25 C 1.37969 * 120.15144 * 359.97438 * 20 19 18 26 26 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 28 28 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 29 29 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 30 30 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 31 31 H 0.96997 * 120.00100 * 180.02562 * 8 7 5 32 32 H 1.08000 * 120.07678 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.92443 * 180.29605 * 18 17 16 34 34 H 1.08004 * 119.85175 * 179.73991 * 19 18 17 35 35 H 1.09003 * 109.46928 * 29.98050 * 21 20 19 36 36 H 1.08997 * 109.47531 * 149.97788 * 21 20 19 37 37 H 1.08991 * 109.47104 * 60.00174 * 23 22 21 38 38 H 1.08998 * 109.47131 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.47231 * 299.99515 * 23 22 21 40 40 H 1.09002 * 109.47353 * 59.99986 * 24 22 21 41 41 H 1.09000 * 109.46601 * 179.97438 * 24 22 21 42 42 H 1.09000 * 109.46882 * 299.99452 * 24 22 21 43 43 H 1.07997 * 120.07799 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8798 1.3810 10 1 6.5989 1.5440 0.1930 11 1 6.4001 1.6154 2.6090 12 1 6.4962 -0.5192 1.4625 13 8 1.6559 2.0917 -1.2407 14 6 0.4685 2.7278 -1.2559 15 8 -0.2271 2.7394 -0.2601 16 6 0.0095 3.4055 -2.4856 17 6 0.8090 3.3986 -3.6305 18 6 0.3715 4.0281 -4.7771 19 6 -0.8515 4.6757 -4.7910 20 6 -1.6458 4.6917 -3.6585 21 6 -2.9763 5.3991 -3.6832 22 7 -2.7944 6.7989 -3.2765 23 6 -4.0162 7.5791 -3.5137 24 6 -2.3769 6.8886 -1.8709 25 6 -1.2232 4.0606 -2.5067 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0614 2.9497 32 1 1.7657 2.8978 -3.6196 33 1 0.9867 4.0194 -5.6647 34 1 -1.1875 5.1706 -5.6902 35 1 -3.3875 5.3644 -4.6921 36 1 -3.6625 4.9067 -2.9942 37 1 -4.8374 7.1519 -2.9384 38 1 -3.8538 8.6115 -3.2043 39 1 -4.2637 7.5529 -4.5749 40 1 -1.4328 6.3604 -1.7378 41 1 -2.2490 7.9355 -1.5960 42 1 -3.1389 6.4364 -1.2360 43 1 -1.8444 4.0735 -1.6233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -64.784374 kcal Electronic energy + Delta-G solvation = -23254.326708 eV Core-core repulsion = 19878.361486 eV Total energy + Delta-G solvation = -3375.965222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05438 -38.91157 -37.07138 -35.70046 -33.51665 -31.95423 -31.36225 -30.96070 -27.77342 -27.36849 -26.84175 -24.30270 -23.01302 -22.55676 -21.43988 -20.44268 -19.34814 -17.35171 -16.61036 -16.30829 -15.72677 -15.65990 -15.48677 -15.19513 -14.95833 -14.58689 -14.36669 -13.85749 -13.10018 -12.85893 -12.81754 -12.67775 -12.54889 -12.23203 -11.99249 -11.88798 -11.74962 -11.50692 -11.45679 -11.24367 -11.16188 -10.97701 -10.92915 -10.63674 -10.27157 -9.80018 -9.63678 -9.36534 -8.92175 -8.84790 -8.78939 -8.51642 -8.45199 -6.18432 -4.25312 0.96792 1.35819 3.07880 3.23660 3.30435 3.35068 3.63799 3.78697 4.13161 4.33606 4.59511 4.81361 4.96505 5.05988 5.11810 5.13798 5.13975 5.26378 5.39636 5.41456 5.44710 5.53320 5.58936 5.69498 5.87923 5.95149 6.02535 6.24026 6.30577 6.41145 6.47335 6.49929 6.53049 6.74831 6.78675 6.88265 6.93315 6.97830 7.17692 7.25225 7.61986 7.74093 7.94399 8.15846 8.63508 8.89356 9.39873 10.88449 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023986 B = 0.003477 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.081418 B = 8050.945924 C = 8216.984641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.350 6.350 14 C 0.495 3.505 15 O -0.514 6.514 16 C -0.112 4.112 17 C -0.062 4.062 18 C -0.135 4.135 19 C -0.074 4.074 20 C -0.098 4.098 21 C 0.096 3.904 22 N -0.543 5.543 23 C 0.024 3.976 24 C 0.017 3.983 25 C -0.055 4.055 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.266 0.734 32 H 0.141 0.859 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.632 9.626 -12.933 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.266 6.266 14 C 0.340 3.660 15 O -0.406 6.406 16 C -0.114 4.114 17 C -0.080 4.080 18 C -0.153 4.153 19 C -0.093 4.093 20 C -0.099 4.099 21 C -0.031 4.031 22 N -0.267 5.267 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.074 4.074 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.413 9.710 -12.714 19.651 hybrid contribution 0.254 -0.455 0.842 0.990 sum -11.160 9.255 -11.872 18.739 Atomic orbital electron populations 1.21862 0.98401 0.98998 1.00759 1.22020 0.92629 0.99324 1.03373 1.20704 0.95047 0.88756 0.78567 0.93475 1.21077 0.89626 1.38848 1.06257 0.91258 1.24888 0.99245 0.94772 0.95071 1.69899 1.35292 1.37887 1.09479 0.86233 0.83904 0.77866 0.78228 1.19461 1.20765 1.20726 1.86524 1.33624 1.62329 1.44132 1.20964 0.81024 0.76799 0.87261 1.90764 1.55644 1.58801 1.35356 1.19420 0.96273 1.02266 0.93397 1.21605 0.99347 0.95628 0.91417 1.21138 0.96669 0.99135 0.98359 1.21162 0.93748 0.96668 0.97701 1.19545 0.96989 0.99581 0.93766 1.21038 0.93255 0.87481 1.01361 1.62015 1.32792 1.10431 1.21430 1.22388 0.90268 0.98249 1.01493 1.22508 1.01159 1.02300 0.87103 1.21146 0.94513 0.93989 0.97749 0.94812 0.92825 0.94951 0.93951 0.87306 0.92447 0.84153 0.85351 0.85746 0.89775 0.93683 0.95627 0.91260 0.91368 0.90570 0.91349 0.95368 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.56 37.16 0.32 -2.87 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.93 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.55 8.90 -34.44 -0.31 -14.86 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.07 11.29 55.43 0.63 -24.45 16 9 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 O -0.35 -8.40 9.06 -40.52 -0.37 -8.77 16 14 C 0.50 10.73 6.35 34.61 0.22 10.95 16 15 O -0.51 -12.15 13.53 -19.25 -0.26 -12.41 16 16 C -0.11 -1.93 5.87 -104.98 -0.62 -2.55 16 17 C -0.06 -0.92 9.62 -39.17 -0.38 -1.29 16 18 C -0.14 -1.59 10.03 -39.64 -0.40 -1.99 16 19 C -0.07 -0.82 9.69 -39.49 -0.38 -1.20 16 20 C -0.10 -1.19 4.88 -104.68 -0.51 -1.70 16 21 C 0.10 0.96 5.11 -4.97 -0.03 0.93 16 22 N -0.54 -5.56 5.01 -252.72 -1.27 -6.82 16 23 C 0.02 0.19 9.57 60.06 0.57 0.76 16 24 C 0.02 0.19 9.14 60.07 0.55 0.74 16 25 C -0.06 -0.82 7.51 -39.17 -0.29 -1.11 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 28 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.11 2.94 5.95 -51.93 -0.31 2.64 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.14 2.10 7.61 -52.49 -0.40 1.70 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 36 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 37 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.08 0.96 6.17 -51.93 -0.32 0.64 16 41 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.13 1.98 7.62 -52.49 -0.40 1.58 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -30.41 351.60 -9.24 -39.65 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.70 Total: 1.75 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.55 Total: -10.27 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: -0.64 Total: -31.27 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.63 Total: -21.18 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.41 -9.24 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.130 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds