Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31513 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47173 * 119.99725 * 9 7 5 12 12 H 1.48502 * 109.47134 * 239.99840 * 9 7 5 13 13 O 1.45202 * 109.46961 * 295.00042 * 3 2 1 14 14 C 1.34710 * 116.99623 * 90.00461 * 13 3 2 15 15 O 1.21473 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.47725 * 119.99570 * 180.27322 * 14 13 3 17 17 C 1.39645 * 120.15275 * 359.44519 * 16 14 13 18 18 C 1.37921 * 119.84858 * 179.69905 * 17 16 14 19 19 C 1.38389 * 120.14896 * 0.58091 * 18 17 16 20 20 C 1.38340 * 120.30335 * 359.71669 * 19 18 17 21 21 C 1.50705 * 119.92731 * 180.02562 * 20 19 18 22 22 N 1.46902 * 109.47352 * 269.98034 * 21 20 19 23 23 C 1.46897 * 111.00089 * 169.99698 * 22 21 20 24 24 C 1.46901 * 110.99668 * 293.95461 * 22 21 20 25 25 C 1.37969 * 120.15144 * 359.97438 * 20 19 18 26 26 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 28 28 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 29 29 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 30 30 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 31 31 H 0.96997 * 120.00100 * 180.02562 * 8 7 5 32 32 H 1.08000 * 120.07678 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.92443 * 180.29605 * 18 17 16 34 34 H 1.08004 * 119.85175 * 179.73991 * 19 18 17 35 35 H 1.09003 * 109.46928 * 29.98050 * 21 20 19 36 36 H 1.08997 * 109.47531 * 149.97788 * 21 20 19 37 37 H 1.08991 * 109.47104 * 60.00174 * 23 22 21 38 38 H 1.08998 * 109.47131 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.47231 * 299.99515 * 23 22 21 40 40 H 1.09002 * 109.47353 * 59.99986 * 24 22 21 41 41 H 1.09000 * 109.46601 * 179.97438 * 24 22 21 42 42 H 1.09000 * 109.46882 * 299.99452 * 24 22 21 43 43 H 1.07997 * 120.07799 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8798 1.3810 10 1 6.5989 1.5440 0.1930 11 1 6.4001 1.6154 2.6090 12 1 6.4962 -0.5192 1.4625 13 8 1.6559 2.0917 -1.2407 14 6 0.4685 2.7278 -1.2559 15 8 -0.2271 2.7394 -0.2601 16 6 0.0095 3.4055 -2.4856 17 6 0.8090 3.3986 -3.6305 18 6 0.3715 4.0281 -4.7771 19 6 -0.8515 4.6757 -4.7910 20 6 -1.6458 4.6917 -3.6585 21 6 -2.9763 5.3991 -3.6832 22 7 -2.7944 6.7989 -3.2765 23 6 -4.0162 7.5791 -3.5137 24 6 -2.3769 6.8886 -1.8709 25 6 -1.2232 4.0606 -2.5067 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0614 2.9497 32 1 1.7657 2.8978 -3.6196 33 1 0.9867 4.0194 -5.6647 34 1 -1.1875 5.1706 -5.6902 35 1 -3.3875 5.3644 -4.6921 36 1 -3.6625 4.9067 -2.9942 37 1 -4.8374 7.1519 -2.9384 38 1 -3.8538 8.6115 -3.2043 39 1 -4.2637 7.5529 -4.5749 40 1 -1.4328 6.3604 -1.7378 41 1 -2.2490 7.9355 -1.5960 42 1 -3.1389 6.4364 -1.2360 43 1 -1.8444 4.0735 -1.6233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -82.119764 kcal Electronic energy + Delta-G solvation = -23255.078427 eV Core-core repulsion = 19878.361486 eV Total energy + Delta-G solvation = -3376.716941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56774 -40.21186 -37.99654 -37.52292 -35.53192 -33.48662 -32.83212 -32.14681 -29.38765 -28.52159 -27.74129 -25.88953 -24.79375 -23.49558 -22.57899 -22.06246 -21.05364 -19.01614 -18.46005 -17.81232 -17.11275 -16.92978 -16.60358 -16.42274 -16.35210 -15.87077 -15.46962 -15.00272 -14.79098 -14.72215 -14.19560 -13.83568 -13.46821 -13.38447 -13.35524 -13.23033 -13.12956 -12.98143 -12.84566 -12.72090 -12.60176 -12.49770 -12.37299 -12.14442 -11.94056 -11.79540 -11.48290 -11.32272 -10.84806 -10.55591 -9.98995 -9.89090 -9.32216 -8.29134 -6.46147 -0.24659 0.31931 1.40808 1.41578 1.55335 1.63910 1.97725 2.40743 2.70777 3.00471 3.21348 3.68807 3.83647 3.88587 4.08829 4.22899 4.29755 4.32720 4.35530 4.36918 4.42391 4.48107 4.57327 4.60541 4.72836 4.77885 4.79394 4.87058 4.99300 5.00540 5.04708 5.05682 5.17840 5.29388 5.37517 5.42476 5.48689 5.51197 5.63693 5.89351 5.93429 5.97053 6.08051 6.08503 6.58547 6.94789 7.25207 8.78144 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023986 B = 0.003477 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.081418 B = 8050.945924 C = 8216.984641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.270 1.270 13 O -0.357 6.357 14 C 0.489 3.511 15 O -0.546 6.546 16 C -0.144 4.144 17 C -0.072 4.072 18 C -0.123 4.123 19 C -0.056 4.056 20 C -0.094 4.094 21 C 0.096 3.904 22 N -0.551 5.551 23 C 0.024 3.976 24 C 0.019 3.981 25 C -0.060 4.060 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.271 0.729 32 H 0.132 0.868 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.113 0.887 36 H 0.041 0.959 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.025 0.975 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.916 10.659 -15.867 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.195 1.195 13 O -0.273 6.273 14 C 0.336 3.664 15 O -0.439 6.439 16 C -0.145 4.145 17 C -0.090 4.090 18 C -0.141 4.141 19 C -0.075 4.075 20 C -0.095 4.095 21 C -0.031 4.031 22 N -0.275 5.275 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.079 4.079 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.182 0.818 34 H 0.183 0.817 35 H 0.131 0.869 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.044 0.956 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.720 10.751 -15.665 22.323 hybrid contribution 0.236 -0.679 1.689 1.835 sum -11.483 10.072 -13.976 20.704 Atomic orbital electron populations 1.21707 0.96455 1.00597 0.99894 1.21865 0.94321 0.98030 1.02444 1.20415 0.94699 0.89278 0.78411 0.97727 1.21343 0.90306 1.40004 1.07006 0.91594 1.25826 1.04378 0.93806 0.94284 1.70020 1.37432 1.37908 1.09876 0.85138 0.77513 0.78380 0.78394 1.18746 1.20152 1.19539 1.86508 1.35258 1.62957 1.42607 1.21854 0.79775 0.76051 0.88676 1.90729 1.56136 1.60036 1.36964 1.19272 0.98194 1.04735 0.92276 1.21651 0.98927 0.96535 0.91908 1.21503 0.97200 0.97343 0.98042 1.21649 0.92645 0.94813 0.98349 1.19830 0.98098 0.98578 0.92948 1.21115 0.91806 0.87193 1.02953 1.62031 1.34282 1.10634 1.20523 1.22463 0.89158 0.98082 1.02683 1.22446 0.99933 1.02524 0.88036 1.21116 0.93597 0.94532 0.98649 0.91803 0.94607 0.94871 0.93464 0.89345 0.91989 0.85030 0.81755 0.81729 0.86871 0.94048 0.95422 0.90701 0.89602 0.92984 0.90348 0.95630 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.56 71.98 0.62 -5.35 16 2 C -0.13 -6.71 5.49 30.60 0.17 -6.54 16 3 C 0.23 12.73 2.25 29.85 0.07 12.80 16 4 H 0.00 0.31 7.16 -2.39 -0.02 0.30 16 5 C -0.55 -31.88 8.90 25.60 0.23 -31.66 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.91 -53.11 11.29 21.45 0.24 -52.86 16 9 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 13 O -0.36 -18.13 9.06 -56.19 -0.51 -18.64 16 14 C 0.49 22.57 6.35 70.33 0.45 23.02 16 15 O -0.55 -27.73 13.53 19.92 0.27 -27.46 16 16 C -0.14 -5.11 5.87 -20.10 -0.12 -5.23 16 17 C -0.07 -2.10 9.62 22.53 0.22 -1.89 16 18 C -0.12 -2.51 10.03 22.23 0.22 -2.29 16 19 C -0.06 -1.02 9.69 22.33 0.22 -0.80 16 20 C -0.09 -2.09 4.88 -19.90 -0.10 -2.18 16 21 C 0.10 1.66 5.11 85.56 0.44 2.10 16 22 N -0.55 -9.96 5.01 -953.47 -4.78 -14.73 16 23 C 0.02 0.30 9.57 127.69 1.22 1.52 16 24 C 0.02 0.40 9.14 127.69 1.17 1.57 16 25 C -0.06 -1.81 7.51 22.54 0.17 -1.64 16 26 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.03 1.74 7.79 -2.39 -0.02 1.72 16 28 H 0.03 1.49 6.06 -2.39 -0.01 1.47 16 29 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.09 4.98 5.95 -2.39 -0.01 4.97 16 31 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.13 4.01 7.61 -2.91 -0.02 3.99 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.11 1.33 8.01 -2.39 -0.02 1.31 16 36 H 0.04 0.76 8.06 -2.39 -0.02 0.74 16 37 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 39 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 40 H 0.05 1.34 6.17 -2.39 -0.01 1.33 16 41 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 42 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.12 3.77 7.62 -2.91 -0.02 3.75 16 Total: -1.00 -69.73 351.60 3.65 -66.08 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.98 Total: 17.33 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 5.41 Total: -15.19 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -4.53 Total: -67.60 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.24 Total: -46.11 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.73 3.65 -66.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.039 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds