Wall clock time and date at job start Tue Mar 31 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 O 1.45200 * 109.47228 * 64.99678 * 3 2 1 14 14 C 1.34704 * 117.00336 * 269.99921 * 13 3 2 15 15 O 1.21470 * 119.99901 * 0.02562 * 14 13 3 16 16 C 1.47728 * 120.00582 * 180.02562 * 14 13 3 17 17 C 1.39655 * 120.14378 * 359.72293 * 16 14 13 18 18 C 1.37922 * 119.84390 * 179.69750 * 17 16 14 19 19 C 1.38389 * 120.14964 * 0.58150 * 18 17 16 20 20 C 1.38348 * 120.30339 * 359.71780 * 19 18 17 21 21 C 1.50702 * 119.92604 * 180.02562 * 20 19 18 22 22 N 1.46907 * 109.46988 * 269.97831 * 21 20 19 23 23 C 1.46902 * 110.99916 * 66.04366 * 22 21 20 24 24 C 1.46900 * 110.99995 * 189.99643 * 22 21 20 25 25 C 1.37961 * 120.14860 * 359.97438 * 20 19 18 26 26 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 27 27 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 29 29 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 30 30 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.07448 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.92572 * 180.29686 * 18 17 16 34 34 H 1.08000 * 119.84830 * 179.74300 * 19 18 17 35 35 H 1.09006 * 109.46961 * 29.97639 * 21 20 19 36 36 H 1.08997 * 109.47428 * 149.97819 * 21 20 19 37 37 H 1.09004 * 109.46971 * 59.99856 * 23 22 21 38 38 H 1.09000 * 109.47237 * 179.97438 * 23 22 21 39 39 H 1.08996 * 109.47647 * 300.00034 * 23 22 21 40 40 H 1.09002 * 109.46928 * 59.99799 * 24 22 21 41 41 H 1.08998 * 109.47257 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.47209 * 300.00376 * 24 22 21 43 43 H 1.08007 * 120.07421 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7595 11 1 6.3835 0.9214 -2.8163 12 1 6.5575 2.0720 -0.6887 13 8 1.6557 2.0917 1.2407 14 6 0.4683 2.7277 1.2560 15 8 -0.2273 2.7393 0.2603 16 6 0.0121 3.4111 2.4836 17 6 0.8068 3.3949 3.6319 18 6 0.3777 4.0403 4.7728 19 6 -0.8427 4.6927 4.7849 20 6 -1.6377 4.7074 3.6528 21 6 -2.9649 5.4210 3.6753 22 7 -4.0157 4.4872 4.1020 23 6 -3.8175 4.0736 5.4976 24 6 -5.3495 5.0725 3.9108 25 6 -1.2178 4.0713 2.5029 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0604 -2.9501 32 1 1.7572 2.8819 3.6251 33 1 0.9934 4.0326 5.6600 34 1 -1.1758 5.1930 5.6822 35 1 -2.9163 6.2568 4.3734 36 1 -3.1939 5.7941 2.6771 37 1 -3.8458 4.9508 6.1441 38 1 -4.6093 3.3830 5.7879 39 1 -2.8505 3.5805 5.5966 40 1 -5.4961 5.3055 2.8562 41 1 -6.1085 4.3606 4.2350 42 1 -5.4333 5.9859 4.4998 43 1 -1.8392 4.0839 1.6196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:27 Heat of formation + Delta-G solvation = -64.125878 kcal Electronic energy + Delta-G solvation = -23169.402162 eV Core-core repulsion = 19793.465495 eV Total energy + Delta-G solvation = -3375.936667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03228 -38.92346 -37.09003 -35.66630 -33.49445 -31.94572 -31.36463 -30.95463 -27.82399 -27.35030 -26.84868 -24.28819 -22.93813 -22.73885 -21.28694 -20.48804 -19.34558 -17.34554 -16.58564 -16.31505 -15.72099 -15.68049 -15.52077 -15.17955 -14.95257 -14.59854 -14.35584 -13.85863 -13.05842 -12.92428 -12.80755 -12.65444 -12.55717 -12.25506 -12.04047 -11.94709 -11.75459 -11.50734 -11.42471 -11.23464 -11.14899 -10.95845 -10.91374 -10.60872 -10.26724 -9.77416 -9.60953 -9.33617 -8.89736 -8.86827 -8.77709 -8.52785 -8.42998 -6.16638 -4.23636 0.94769 1.38846 3.07564 3.25675 3.31081 3.34678 3.66394 3.77435 4.13334 4.34574 4.60892 4.77928 4.92392 5.02195 5.05239 5.09849 5.15302 5.22386 5.33730 5.39128 5.43734 5.51690 5.61501 5.70016 5.74330 5.95641 6.02535 6.27728 6.34472 6.42235 6.45124 6.50193 6.57832 6.73038 6.77678 6.90974 6.93726 7.01410 7.20883 7.28326 7.63764 7.76597 7.96831 8.17960 8.65887 8.91222 9.41384 10.90179 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028110 B = 0.003403 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.854709 B = 8225.384903 C = 8756.496911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.351 6.351 14 C 0.495 3.505 15 O -0.512 6.512 16 C -0.111 4.111 17 C -0.062 4.062 18 C -0.135 4.135 19 C -0.091 4.091 20 C -0.098 4.098 21 C 0.097 3.903 22 N -0.543 5.543 23 C 0.020 3.980 24 C 0.025 3.975 25 C -0.039 4.039 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.109 0.891 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.024 0.976 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.102 8.737 14.819 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.267 6.267 14 C 0.339 3.661 15 O -0.403 6.403 16 C -0.113 4.113 17 C -0.080 4.080 18 C -0.153 4.153 19 C -0.109 4.109 20 C -0.099 4.099 21 C -0.030 4.030 22 N -0.266 5.266 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.058 4.058 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.127 0.873 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.231 8.199 14.012 20.327 hybrid contribution 0.821 0.561 0.273 1.031 sum -11.410 8.759 14.285 20.273 Atomic orbital electron populations 1.21861 0.98327 0.99022 1.00831 1.22017 0.92684 0.99300 1.03339 1.20698 0.94987 0.88780 0.78581 0.93463 1.21038 0.89652 1.38830 1.06349 0.91335 1.24884 0.99204 0.94820 0.95047 1.69893 1.35345 1.37849 1.09446 0.86288 0.83947 0.78652 0.77328 1.20367 1.20993 1.19644 1.86517 1.33626 1.62406 1.44143 1.20950 0.81021 0.76863 0.87263 1.90769 1.55540 1.58739 1.35274 1.19469 0.96373 1.02081 0.93330 1.21606 0.99399 0.95572 0.91418 1.21086 0.96618 0.99156 0.98459 1.21197 0.94235 0.98200 0.97297 1.19537 0.95940 1.00636 0.93773 1.21039 0.88300 0.92242 1.01459 1.61961 1.02135 1.40730 1.21817 1.22479 1.03202 0.99632 0.87483 1.22395 0.90186 0.97877 1.01884 1.21108 0.93751 0.92801 0.98120 0.92801 0.94818 0.94884 0.87331 0.93977 0.92396 0.84145 0.85433 0.86215 0.93805 0.89620 0.95778 0.91445 0.90716 0.91135 0.91244 0.95752 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.56 37.16 0.32 -2.92 16 2 C -0.14 -3.42 5.49 -26.73 -0.15 -3.57 16 3 C 0.22 5.97 2.25 -27.88 -0.06 5.91 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.62 8.90 -34.44 -0.31 -14.93 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.17 11.29 55.43 0.63 -24.55 16 9 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 O -0.35 -8.47 9.06 -40.50 -0.37 -8.84 16 14 C 0.49 10.84 6.35 34.61 0.22 11.06 16 15 O -0.51 -12.28 13.53 -19.24 -0.26 -12.54 16 16 C -0.11 -1.94 5.87 -104.98 -0.62 -2.55 16 17 C -0.06 -0.91 9.62 -39.17 -0.38 -1.29 16 18 C -0.14 -1.57 10.03 -39.64 -0.40 -1.97 16 19 C -0.09 -0.97 7.96 -39.49 -0.31 -1.29 16 20 C -0.10 -1.19 4.88 -104.68 -0.51 -1.70 16 21 C 0.10 0.97 5.11 -4.97 -0.03 0.94 16 22 N -0.54 -5.50 5.01 -252.71 -1.27 -6.77 16 23 C 0.02 0.18 9.14 60.07 0.55 0.72 16 24 C 0.02 0.19 9.57 60.06 0.57 0.77 16 25 C -0.04 -0.59 9.24 -39.18 -0.36 -0.96 16 26 H 0.05 1.27 7.79 -51.93 -0.40 0.87 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.73 6.06 -51.93 -0.31 0.41 16 29 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.14 2.10 7.61 -52.49 -0.40 1.70 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 0.97 8.03 -52.49 -0.42 0.55 16 35 H 0.04 0.38 8.06 -51.93 -0.42 -0.04 16 36 H 0.09 0.83 8.00 -51.93 -0.42 0.41 16 37 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 39 H 0.07 0.71 6.17 -51.93 -0.32 0.39 16 40 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 42 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.14 2.12 7.65 -52.48 -0.40 1.72 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -30.74 351.60 -9.24 -39.98 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.70 Total: 1.49 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.55 Total: -10.14 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: -0.64 Total: -31.32 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.63 Total: -21.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.74 -9.24 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.149 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds