Wall clock time and date at job start Tue Mar 31 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 O 1.45200 * 109.47228 * 64.99678 * 3 2 1 14 14 C 1.34704 * 117.00336 * 269.99921 * 13 3 2 15 15 O 1.21470 * 119.99901 * 0.02562 * 14 13 3 16 16 C 1.47728 * 120.00582 * 180.02562 * 14 13 3 17 17 C 1.39655 * 120.14378 * 359.72293 * 16 14 13 18 18 C 1.37922 * 119.84390 * 179.69750 * 17 16 14 19 19 C 1.38389 * 120.14964 * 0.58150 * 18 17 16 20 20 C 1.38348 * 120.30339 * 359.71780 * 19 18 17 21 21 C 1.50702 * 119.92604 * 180.02562 * 20 19 18 22 22 N 1.46907 * 109.46988 * 269.97831 * 21 20 19 23 23 C 1.46902 * 110.99916 * 66.04366 * 22 21 20 24 24 C 1.46900 * 110.99995 * 189.99643 * 22 21 20 25 25 C 1.37961 * 120.14860 * 359.97438 * 20 19 18 26 26 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 27 27 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 29 29 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 30 30 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.07448 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.92572 * 180.29686 * 18 17 16 34 34 H 1.08000 * 119.84830 * 179.74300 * 19 18 17 35 35 H 1.09006 * 109.46961 * 29.97639 * 21 20 19 36 36 H 1.08997 * 109.47428 * 149.97819 * 21 20 19 37 37 H 1.09004 * 109.46971 * 59.99856 * 23 22 21 38 38 H 1.09000 * 109.47237 * 179.97438 * 23 22 21 39 39 H 1.08996 * 109.47647 * 300.00034 * 23 22 21 40 40 H 1.09002 * 109.46928 * 59.99799 * 24 22 21 41 41 H 1.08998 * 109.47257 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.47209 * 300.00376 * 24 22 21 43 43 H 1.08007 * 120.07421 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7595 11 1 6.3835 0.9214 -2.8163 12 1 6.5575 2.0720 -0.6887 13 8 1.6557 2.0917 1.2407 14 6 0.4683 2.7277 1.2560 15 8 -0.2273 2.7393 0.2603 16 6 0.0121 3.4111 2.4836 17 6 0.8068 3.3949 3.6319 18 6 0.3777 4.0403 4.7728 19 6 -0.8427 4.6927 4.7849 20 6 -1.6377 4.7074 3.6528 21 6 -2.9649 5.4210 3.6753 22 7 -4.0157 4.4872 4.1020 23 6 -3.8175 4.0736 5.4976 24 6 -5.3495 5.0725 3.9108 25 6 -1.2178 4.0713 2.5029 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0604 -2.9501 32 1 1.7572 2.8819 3.6251 33 1 0.9934 4.0326 5.6600 34 1 -1.1758 5.1930 5.6822 35 1 -2.9163 6.2568 4.3734 36 1 -3.1939 5.7941 2.6771 37 1 -3.8458 4.9508 6.1441 38 1 -4.6093 3.3830 5.7879 39 1 -2.8505 3.5805 5.5966 40 1 -5.4961 5.3055 2.8562 41 1 -6.1085 4.3606 4.2350 42 1 -5.4333 5.9859 4.4998 43 1 -1.8392 4.0839 1.6196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:27 Heat of formation + Delta-G solvation = -81.802590 kcal Electronic energy + Delta-G solvation = -23170.168682 eV Core-core repulsion = 19793.465495 eV Total energy + Delta-G solvation = -3376.703187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54823 -40.21507 -37.99348 -37.48969 -35.52043 -33.47132 -32.81914 -32.16802 -29.36715 -28.44881 -27.73869 -25.89168 -24.76264 -23.60093 -22.43824 -22.04489 -21.08720 -19.01662 -18.44202 -17.80841 -17.09861 -16.92604 -16.59599 -16.39183 -16.35081 -15.82632 -15.43682 -14.98984 -14.78451 -14.71487 -14.18764 -13.75800 -13.50446 -13.35825 -13.34161 -13.19734 -13.11513 -12.93835 -12.84381 -12.79098 -12.56477 -12.46629 -12.35137 -12.15084 -11.90300 -11.79074 -11.47258 -11.30953 -10.84553 -10.54040 -9.99878 -9.87250 -9.23573 -8.27978 -6.45196 -0.25716 0.34385 1.41208 1.43663 1.54600 1.63828 1.98925 2.41522 2.71826 3.01465 3.25385 3.69648 3.81598 3.92627 4.11542 4.21213 4.32043 4.33961 4.35363 4.36796 4.45917 4.51353 4.59521 4.62881 4.73853 4.78906 4.81454 4.89046 5.00584 5.05033 5.05842 5.08133 5.19052 5.30331 5.38373 5.41547 5.47733 5.51896 5.64801 5.88558 5.94594 6.06978 6.09486 6.12894 6.59400 6.96305 7.26117 8.79126 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028110 B = 0.003403 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.854709 B = 8225.384903 C = 8756.496911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.357 6.357 14 C 0.489 3.511 15 O -0.545 6.545 16 C -0.143 4.143 17 C -0.071 4.071 18 C -0.122 4.122 19 C -0.070 4.070 20 C -0.092 4.092 21 C 0.099 3.901 22 N -0.568 5.568 23 C 0.020 3.980 24 C 0.026 3.974 25 C -0.050 4.050 26 H 0.035 0.965 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.271 0.729 32 H 0.132 0.868 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.152 9.785 17.816 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.273 6.273 14 C 0.336 3.664 15 O -0.438 6.438 16 C -0.144 4.144 17 C -0.090 4.090 18 C -0.140 4.140 19 C -0.088 4.088 20 C -0.093 4.093 21 C -0.028 4.028 22 N -0.292 5.292 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.069 4.069 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.302 9.253 17.029 22.955 hybrid contribution 0.717 0.309 -0.582 0.974 sum -11.585 9.562 16.447 22.274 Atomic orbital electron populations 1.21706 0.96484 1.00580 0.99903 1.21865 0.94278 0.98075 1.02435 1.20412 0.94694 0.89257 0.78432 0.97725 1.21314 0.90291 1.39986 1.07137 0.91543 1.25832 1.04395 0.93834 0.94246 1.70018 1.37501 1.37885 1.09840 0.85182 0.77481 0.79150 0.77593 1.19088 1.20280 1.19009 1.86502 1.35222 1.63006 1.42609 1.21862 0.79766 0.76105 0.88687 1.90733 1.56072 1.60033 1.36947 1.19308 0.98298 1.04520 0.92248 1.21651 0.98980 0.96494 0.91865 1.21461 0.97125 0.97271 0.98124 1.21667 0.93001 0.96268 0.97855 1.19812 0.97089 0.99465 0.92914 1.21042 0.87101 0.92546 1.02161 1.61918 1.02933 1.41408 1.22956 1.22493 1.02882 1.00406 0.87010 1.22406 0.89212 0.98536 1.02041 1.21079 0.92938 0.93745 0.99109 0.94588 0.91836 0.94925 0.89325 0.93483 0.91986 0.84985 0.81727 0.82083 0.91358 0.89961 0.93957 0.91066 0.91578 0.91445 0.90723 0.94358 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.56 71.98 0.62 -5.45 16 2 C -0.13 -6.76 5.49 30.59 0.17 -6.59 16 3 C 0.23 12.80 2.25 29.85 0.07 12.87 16 4 H 0.00 0.32 7.16 -2.39 -0.02 0.30 16 5 C -0.55 -31.98 8.90 25.60 0.23 -31.75 16 6 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 7 C 0.02 0.94 5.29 84.66 0.45 1.38 16 8 N -0.91 -53.31 11.29 21.45 0.24 -53.07 16 9 Si 0.98 43.48 29.54 68.60 2.03 45.50 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 O -0.36 -18.23 9.06 -56.14 -0.51 -18.73 16 14 C 0.49 22.78 6.35 70.33 0.45 23.22 16 15 O -0.54 -28.10 13.53 19.93 0.27 -27.83 16 16 C -0.14 -5.12 5.87 -20.10 -0.12 -5.24 16 17 C -0.07 -2.08 9.62 22.54 0.22 -1.87 16 18 C -0.12 -2.43 10.03 22.23 0.22 -2.20 16 19 C -0.07 -1.22 7.96 22.33 0.18 -1.04 16 20 C -0.09 -2.05 4.88 -19.90 -0.10 -2.14 16 21 C 0.10 1.72 5.11 85.56 0.44 2.15 16 22 N -0.57 -10.19 5.01 -953.43 -4.78 -14.97 16 23 C 0.02 0.28 9.14 127.69 1.17 1.45 16 24 C 0.03 0.35 9.57 127.69 1.22 1.57 16 25 C -0.05 -1.54 9.24 22.53 0.21 -1.33 16 26 H 0.03 1.78 7.79 -2.39 -0.02 1.76 16 27 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 28 H 0.03 1.49 6.06 -2.39 -0.01 1.48 16 29 H 0.09 5.03 5.95 -2.39 -0.01 5.01 16 30 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.13 4.00 7.61 -2.91 -0.02 3.98 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.16 1.60 8.03 -2.91 -0.02 1.57 16 35 H 0.07 0.88 8.06 -2.38 -0.02 0.86 16 36 H 0.08 1.48 8.00 -2.39 -0.02 1.46 16 37 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.94 8.12 -2.39 -0.02 0.93 16 39 H 0.07 1.04 6.17 -2.39 -0.01 1.02 16 40 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 41 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 42 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.12 3.97 7.65 -2.91 -0.02 3.95 16 Total: -1.00 -70.52 351.60 3.65 -66.87 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.98 Total: 17.19 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.41 Total: -14.97 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -4.53 Total: -68.04 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.24 Total: -46.56 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.52 3.65 -66.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.929 kcal (2) G-P(sol) polarization free energy of solvation -70.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds