Wall clock time and date at job start Tue Mar 31 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47071 * 2 1 4 4 H 1.08998 * 109.46643 * 305.46880 * 3 2 1 5 5 C 1.50705 * 109.46862 * 185.47244 * 3 2 1 6 6 H 1.08007 * 119.99503 * 274.99027 * 5 3 2 7 7 C 1.37868 * 120.00047 * 94.99288 * 5 3 2 8 8 N 1.31515 * 120.00088 * 184.77424 * 7 5 3 9 9 Si 1.86800 * 120.00295 * 4.77235 * 7 5 3 10 10 H 1.48505 * 109.46792 * 85.04935 * 9 7 5 11 11 H 1.48500 * 109.47410 * 205.04879 * 9 7 5 12 12 H 1.48494 * 109.47016 * 325.05404 * 9 7 5 13 13 O 1.45194 * 109.47392 * 65.47152 * 3 2 1 14 14 C 1.34709 * 117.00125 * 270.00026 * 13 3 2 15 15 O 1.21473 * 119.99614 * 0.02562 * 14 13 3 16 16 C 1.47717 * 120.00574 * 179.97438 * 14 13 3 17 17 C 1.40076 * 120.56207 * 37.24811 * 16 14 13 18 18 C 1.38345 * 118.28410 * 179.73479 * 17 16 14 19 19 C 1.38366 * 119.30651 * 0.54564 * 18 17 16 20 20 C 1.50697 * 119.45255 * 179.69581 * 19 18 17 21 21 N 1.31933 * 121.08997 * 359.71866 * 19 18 17 22 22 C 1.31680 * 121.88322 * 0.02562 * 21 19 18 23 23 C 1.50706 * 119.71470 * 179.97438 * 22 21 19 24 24 C 1.53004 * 109.47254 * 308.35459 * 23 22 21 25 25 C 1.52991 * 109.47360 * 68.35941 * 23 22 21 26 26 H 1.09000 * 109.46559 * 60.00758 * 1 2 3 27 27 H 1.08994 * 109.47409 * 300.00459 * 1 2 3 28 28 H 1.09001 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46874 * 119.99686 * 2 1 3 30 30 H 1.08994 * 109.47409 * 239.99541 * 2 1 3 31 31 H 0.96998 * 120.00266 * 179.97438 * 8 7 5 32 32 H 1.07996 * 120.85881 * 359.97438 * 17 16 14 33 33 H 1.07998 * 120.34805 * 180.24016 * 18 17 16 34 34 H 1.09003 * 109.47511 * 270.02049 * 20 19 18 35 35 H 1.09005 * 109.47559 * 30.02182 * 20 19 18 36 36 H 1.08998 * 109.46977 * 150.02306 * 20 19 18 37 37 H 1.09001 * 109.46635 * 188.36474 * 23 22 21 38 38 H 1.09002 * 109.46518 * 60.00362 * 24 23 22 39 39 H 1.08992 * 109.47194 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47039 * 300.01086 * 24 23 22 41 41 H 1.09003 * 109.47183 * 60.00050 * 25 23 22 42 42 H 1.09008 * 109.47115 * 179.97438 * 25 23 22 43 43 H 1.09002 * 109.47208 * 300.00125 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8370 5 6 3.5410 1.4446 -0.1355 6 1 4.1624 1.3344 0.7410 7 6 4.1207 1.5873 -1.3782 8 7 5.4261 1.4952 -1.5093 9 14 3.0523 1.9112 -2.8758 10 1 2.7888 3.3683 -2.9900 11 1 3.7537 1.4379 -4.0961 12 1 1.7649 1.1853 -2.7317 13 8 1.6656 2.0883 1.2453 14 6 0.4784 2.7243 1.2716 15 8 -0.2250 2.7385 0.2814 16 6 0.0313 3.4034 2.5049 17 6 0.9498 4.0776 3.3197 18 6 0.4788 4.7021 4.4609 19 6 -0.8694 4.6317 4.7640 20 6 -1.3848 5.3048 6.0099 21 7 -1.7110 3.9846 3.9807 22 6 -1.3124 3.3788 2.8815 23 6 -2.3159 2.6532 2.0226 24 6 -3.1257 1.6872 2.8899 25 6 -3.2587 3.6675 1.3723 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 5.8340 1.5952 -2.3837 32 1 1.9979 4.1124 3.0617 33 1 1.1571 5.2347 5.1109 34 1 -1.3437 4.6051 6.8446 35 1 -0.7680 6.1750 6.2345 36 1 -2.4158 5.6214 5.8518 37 1 -1.7930 2.0937 1.2469 38 1 -3.6486 2.2467 3.6656 39 1 -3.8518 1.1628 2.2688 40 1 -2.4540 0.9646 3.3533 41 1 -2.6818 4.3556 0.7544 42 1 -3.9843 3.1427 0.7507 43 1 -3.7816 4.2270 2.1481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:38 Heat of formation + Delta-G solvation = -74.568149 kcal Electronic energy + Delta-G solvation = -24129.536780 eV Core-core repulsion = 20753.147302 eV Total energy + Delta-G solvation = -3376.389478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83566 -39.32027 -36.26344 -35.31732 -33.60606 -32.88846 -31.98504 -31.42829 -28.40406 -27.68772 -27.02433 -24.35583 -23.30484 -22.77168 -21.19413 -20.36507 -19.71867 -17.82551 -16.91451 -16.47622 -16.07498 -15.70228 -15.45889 -14.64284 -14.46465 -14.27171 -13.97091 -13.55651 -13.26983 -13.08361 -12.86217 -12.72342 -12.50628 -12.30950 -12.23772 -12.15158 -11.96975 -11.73597 -11.50905 -11.26326 -11.07364 -11.04720 -10.83954 -10.75680 -10.17943 -9.95850 -9.84572 -9.81190 -9.44456 -9.36048 -9.11776 -8.84134 -8.74843 -6.32461 -4.36863 0.72364 1.22183 2.86096 3.16806 3.26187 3.31627 3.39918 3.74552 4.07187 4.22179 4.54539 4.70129 4.92530 4.96477 5.10278 5.19274 5.27849 5.35603 5.39630 5.44550 5.52445 5.74567 5.75282 5.81608 5.85620 5.88516 5.94169 5.94938 5.99808 6.04762 6.11267 6.17985 6.34816 6.36627 6.44939 6.59479 6.63789 6.75520 6.78959 7.12330 7.30177 7.45971 7.90246 8.16997 8.54693 8.77749 9.26508 10.78653 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.005012 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.346088 B = 5585.097482 C = 6326.324657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.187 3.813 4 H 0.049 0.951 5 C -0.520 4.520 6 H 0.085 0.915 7 C 0.084 3.916 8 N -0.880 5.880 9 Si 0.867 3.133 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.258 1.258 13 O -0.340 6.340 14 C 0.501 3.499 15 O -0.506 6.506 16 C -0.168 4.168 17 C -0.019 4.019 18 C -0.189 4.189 19 C 0.145 3.855 20 C -0.104 4.104 21 N -0.484 5.484 22 C 0.196 3.804 23 C -0.066 4.066 24 C -0.138 4.138 25 C -0.130 4.130 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.271 0.729 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 4.892 11.254 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.135 3.865 4 H 0.067 0.933 5 C -0.557 4.557 6 H 0.103 0.897 7 C -0.121 4.121 8 N -0.516 5.516 9 Si 0.693 3.307 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.182 1.182 13 O -0.255 6.255 14 C 0.345 3.655 15 O -0.398 6.398 16 C -0.171 4.171 17 C -0.045 4.045 18 C -0.208 4.208 19 C 0.008 3.992 20 C -0.161 4.161 21 N -0.194 5.194 22 C 0.057 3.943 23 C -0.084 4.084 24 C -0.196 4.196 25 C -0.187 4.187 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.801 4.841 11.037 19.087 hybrid contribution 0.674 0.234 -1.171 1.371 sum -14.127 5.075 9.866 17.963 Atomic orbital electron populations 1.21965 0.97500 0.99962 1.01513 1.22096 0.93629 0.98802 1.02422 1.21096 0.96130 0.88889 0.80414 0.93286 1.20788 0.87779 1.51407 0.95746 0.89659 1.24896 0.94954 0.93617 0.98603 1.69849 1.09447 1.47543 1.24805 0.86987 0.81318 0.79911 0.82494 1.19567 1.20675 1.18248 1.86763 1.33316 1.61932 1.43494 1.20844 0.81037 0.76666 0.86961 1.90738 1.54760 1.58873 1.35422 1.20259 0.95090 1.04562 0.97202 1.21924 1.00425 0.90905 0.91228 1.21904 0.96546 1.03520 0.98878 1.21485 0.90019 0.92646 0.95064 1.20743 1.02430 0.99855 0.93091 1.67351 1.38135 1.09421 1.04458 1.21275 0.90753 0.91440 0.90819 1.20526 0.94845 0.96450 0.96617 1.21769 0.99613 0.98449 0.99737 1.21647 0.98431 0.98523 1.00136 0.92621 0.93870 0.93932 0.91926 0.90946 0.91916 0.83160 0.84176 0.90169 0.90537 0.90382 0.87200 0.91719 0.92265 0.93105 0.92497 0.92179 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.57 37.16 0.32 -2.57 16 2 C -0.13 -2.85 5.63 -26.73 -0.15 -3.00 16 3 C 0.19 4.59 1.90 -27.88 -0.05 4.54 16 4 H 0.05 1.26 4.31 -51.93 -0.22 1.03 16 5 C -0.52 -14.47 9.25 -34.44 -0.32 -14.79 16 6 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 7 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 8 N -0.88 -25.80 13.96 55.43 0.77 -25.02 16 9 Si 0.87 21.10 26.99 -169.99 -4.59 16.51 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.26 -6.10 6.81 56.52 0.39 -5.71 16 13 O -0.34 -7.74 9.67 -40.52 -0.39 -8.13 16 14 C 0.50 10.23 5.58 34.60 0.19 10.43 16 15 O -0.51 -10.88 11.66 -19.25 -0.22 -11.11 16 16 C -0.17 -2.89 5.83 -104.84 -0.61 -3.50 16 17 C -0.02 -0.28 9.81 -38.85 -0.38 -0.67 16 18 C -0.19 -2.25 9.72 -39.49 -0.38 -2.63 16 19 C 0.15 1.76 6.78 -82.50 -0.56 1.20 16 20 C -0.10 -0.84 10.16 36.00 0.37 -0.47 16 21 N -0.48 -6.91 9.66 -5.40 -0.05 -6.96 16 22 C 0.20 3.09 5.52 -82.16 -0.45 2.63 16 23 C -0.07 -0.97 2.68 -91.77 -0.25 -1.22 16 24 C -0.14 -1.73 9.02 37.16 0.34 -1.40 16 25 C -0.13 -1.73 9.17 37.15 0.34 -1.39 16 26 H 0.05 1.09 7.82 -51.93 -0.41 0.69 16 27 H 0.04 0.81 5.27 -51.93 -0.27 0.54 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 1.86 4.32 -51.93 -0.22 1.64 16 38 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -30.55 349.65 -7.52 -38.07 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.60 Total: 1.95 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -1.70 Total: -10.58 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.72 Total: -31.98 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.62 Total: -19.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.59 Total: 16.51 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.55 -7.52 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.497 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds