Wall clock time and date at job start Tue Mar 31 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47071 * 2 1 4 4 H 1.08998 * 109.46643 * 305.46880 * 3 2 1 5 5 C 1.50705 * 109.46862 * 185.47244 * 3 2 1 6 6 H 1.08007 * 119.99503 * 274.99027 * 5 3 2 7 7 C 1.37868 * 120.00047 * 94.99288 * 5 3 2 8 8 N 1.31515 * 120.00088 * 184.77424 * 7 5 3 9 9 Si 1.86800 * 120.00295 * 4.77235 * 7 5 3 10 10 H 1.48505 * 109.46792 * 85.04935 * 9 7 5 11 11 H 1.48500 * 109.47410 * 205.04879 * 9 7 5 12 12 H 1.48494 * 109.47016 * 325.05404 * 9 7 5 13 13 O 1.45194 * 109.47392 * 65.47152 * 3 2 1 14 14 C 1.34709 * 117.00125 * 270.00026 * 13 3 2 15 15 O 1.21473 * 119.99614 * 0.02562 * 14 13 3 16 16 C 1.47717 * 120.00574 * 179.97438 * 14 13 3 17 17 C 1.40076 * 120.56207 * 37.24811 * 16 14 13 18 18 C 1.38345 * 118.28410 * 179.73479 * 17 16 14 19 19 C 1.38366 * 119.30651 * 0.54564 * 18 17 16 20 20 C 1.50697 * 119.45255 * 179.69581 * 19 18 17 21 21 N 1.31933 * 121.08997 * 359.71866 * 19 18 17 22 22 C 1.31680 * 121.88322 * 0.02562 * 21 19 18 23 23 C 1.50706 * 119.71470 * 179.97438 * 22 21 19 24 24 C 1.53004 * 109.47254 * 308.35459 * 23 22 21 25 25 C 1.52991 * 109.47360 * 68.35941 * 23 22 21 26 26 H 1.09000 * 109.46559 * 60.00758 * 1 2 3 27 27 H 1.08994 * 109.47409 * 300.00459 * 1 2 3 28 28 H 1.09001 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46874 * 119.99686 * 2 1 3 30 30 H 1.08994 * 109.47409 * 239.99541 * 2 1 3 31 31 H 0.96998 * 120.00266 * 179.97438 * 8 7 5 32 32 H 1.07996 * 120.85881 * 359.97438 * 17 16 14 33 33 H 1.07998 * 120.34805 * 180.24016 * 18 17 16 34 34 H 1.09003 * 109.47511 * 270.02049 * 20 19 18 35 35 H 1.09005 * 109.47559 * 30.02182 * 20 19 18 36 36 H 1.08998 * 109.46977 * 150.02306 * 20 19 18 37 37 H 1.09001 * 109.46635 * 188.36474 * 23 22 21 38 38 H 1.09002 * 109.46518 * 60.00362 * 24 23 22 39 39 H 1.08992 * 109.47194 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47039 * 300.01086 * 24 23 22 41 41 H 1.09003 * 109.47183 * 60.00050 * 25 23 22 42 42 H 1.09008 * 109.47115 * 179.97438 * 25 23 22 43 43 H 1.09002 * 109.47208 * 300.00125 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8370 5 6 3.5410 1.4446 -0.1355 6 1 4.1624 1.3344 0.7410 7 6 4.1207 1.5873 -1.3782 8 7 5.4261 1.4952 -1.5093 9 14 3.0523 1.9112 -2.8758 10 1 2.7888 3.3683 -2.9900 11 1 3.7537 1.4379 -4.0961 12 1 1.7649 1.1853 -2.7317 13 8 1.6656 2.0883 1.2453 14 6 0.4784 2.7243 1.2716 15 8 -0.2250 2.7385 0.2814 16 6 0.0313 3.4034 2.5049 17 6 0.9498 4.0776 3.3197 18 6 0.4788 4.7021 4.4609 19 6 -0.8694 4.6317 4.7640 20 6 -1.3848 5.3048 6.0099 21 7 -1.7110 3.9846 3.9807 22 6 -1.3124 3.3788 2.8815 23 6 -2.3159 2.6532 2.0226 24 6 -3.1257 1.6872 2.8899 25 6 -3.2587 3.6675 1.3723 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 5.8340 1.5952 -2.3837 32 1 1.9979 4.1124 3.0617 33 1 1.1571 5.2347 5.1109 34 1 -1.3437 4.6051 6.8446 35 1 -0.7680 6.1750 6.2345 36 1 -2.4158 5.6214 5.8518 37 1 -1.7930 2.0937 1.2469 38 1 -3.6486 2.2467 3.6656 39 1 -3.8518 1.1628 2.2688 40 1 -2.4540 0.9646 3.3533 41 1 -2.6818 4.3556 0.7544 42 1 -3.9843 3.1427 0.7507 43 1 -3.7816 4.2270 2.1481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:37 Heat of formation + Delta-G solvation = -91.283614 kcal Electronic energy + Delta-G solvation = -24130.261617 eV Core-core repulsion = 20753.147302 eV Total energy + Delta-G solvation = -3377.114315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.11976 -40.80362 -37.84720 -36.53437 -35.40722 -34.29513 -33.74376 -32.41931 -29.95214 -29.04510 -28.04475 -25.64888 -24.87501 -24.10635 -22.64535 -21.52057 -21.41079 -19.62326 -18.59051 -18.07545 -17.55547 -17.04508 -16.74326 -16.27741 -15.62769 -15.41683 -15.21364 -14.97844 -14.84658 -14.36918 -14.14620 -14.11267 -13.97702 -13.66323 -13.42990 -13.23237 -13.16613 -13.01964 -12.97084 -12.91093 -12.61990 -12.34324 -12.15512 -12.10921 -11.91710 -11.81255 -11.38043 -11.22320 -11.08645 -10.93337 -10.82519 -10.53955 -9.92061 -8.49421 -6.59134 -0.44140 0.12944 1.23281 1.27389 1.36992 1.37720 1.84464 2.17640 2.60889 2.87296 3.05753 3.48074 3.69921 3.74460 3.94180 4.13888 4.14475 4.21424 4.21793 4.25610 4.30510 4.41877 4.55475 4.70012 4.71505 4.78965 4.82927 4.84009 4.93175 4.96401 4.98846 5.04802 5.06582 5.10527 5.11988 5.17846 5.29945 5.31825 5.38028 5.46815 5.56890 5.66591 6.12130 6.49123 6.82271 6.83204 7.08917 8.65836 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.005012 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.346088 B = 5585.097482 C = 6326.324657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.191 3.809 4 H 0.039 0.961 5 C -0.532 4.532 6 H 0.047 0.953 7 C 0.039 3.961 8 N -0.921 5.921 9 Si 0.924 3.076 10 H -0.271 1.271 11 H -0.266 1.266 12 H -0.247 1.247 13 O -0.354 6.354 14 C 0.501 3.499 15 O -0.521 6.521 16 C -0.202 4.202 17 C -0.031 4.031 18 C -0.178 4.178 19 C 0.149 3.851 20 C -0.101 4.101 21 N -0.491 5.491 22 C 0.192 3.808 23 C -0.071 4.071 24 C -0.130 4.130 25 C -0.123 4.123 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.276 0.724 32 H 0.146 0.854 33 H 0.179 0.821 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.293 5.689 12.610 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.138 3.862 4 H 0.057 0.943 5 C -0.570 4.570 6 H 0.065 0.935 7 C -0.162 4.162 8 N -0.559 5.559 9 Si 0.747 3.253 10 H -0.196 1.196 11 H -0.191 1.191 12 H -0.171 1.171 13 O -0.270 6.270 14 C 0.347 3.653 15 O -0.413 6.413 16 C -0.205 4.205 17 C -0.056 4.056 18 C -0.197 4.197 19 C 0.012 3.988 20 C -0.158 4.158 21 N -0.201 5.201 22 C 0.054 3.946 23 C -0.090 4.090 24 C -0.187 4.187 25 C -0.180 4.180 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.197 0.803 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.094 0.906 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.166 5.636 12.405 21.916 hybrid contribution 1.407 0.067 -1.392 1.981 sum -15.759 5.703 11.013 20.054 Atomic orbital electron populations 1.21850 0.95098 1.01864 1.01026 1.22021 0.95711 0.96723 1.02390 1.20894 0.93987 0.90507 0.80844 0.94293 1.20921 0.89557 1.51725 0.94762 0.93459 1.25608 0.96044 0.93228 1.01348 1.69951 1.11119 1.48924 1.25920 0.86082 0.80165 0.79755 0.79330 1.19583 1.19094 1.17077 1.86705 1.35189 1.62734 1.42382 1.21356 0.79835 0.76038 0.88116 1.90712 1.54811 1.59425 1.36341 1.20189 0.96475 1.06844 0.97012 1.22058 1.00054 0.91322 0.92169 1.22296 0.97239 1.02343 0.97820 1.22300 0.90052 0.90944 0.95545 1.20900 1.02970 1.00768 0.91181 1.67468 1.38554 1.09911 1.04198 1.21394 0.90159 0.91585 0.91449 1.20540 0.95054 0.96979 0.96425 1.21711 0.99431 0.97874 0.99712 1.21596 0.98170 0.98037 1.00226 0.93370 0.94109 0.90755 0.91827 0.91127 0.91412 0.83579 0.80320 0.88491 0.87852 0.90079 0.89657 0.91038 0.90632 0.93826 0.94401 0.90612 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 8.57 71.98 0.62 -4.63 16 2 C -0.13 -5.69 5.63 30.60 0.17 -5.52 16 3 C 0.19 9.58 1.90 29.85 0.06 9.64 16 4 H 0.04 2.03 4.31 -2.39 -0.01 2.02 16 5 C -0.53 -30.83 9.25 25.60 0.24 -30.60 16 6 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 7 C 0.04 2.24 5.47 84.65 0.46 2.70 16 8 N -0.92 -55.53 13.96 21.44 0.30 -55.23 16 9 Si 0.92 43.92 26.99 68.60 1.85 45.77 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.25 -11.22 6.81 99.48 0.68 -10.54 16 13 O -0.35 -16.72 9.67 -56.19 -0.54 -17.26 16 14 C 0.50 21.00 5.58 70.33 0.39 21.39 16 15 O -0.52 -22.84 11.66 19.92 0.23 -22.61 16 16 C -0.20 -7.01 5.83 -20.00 -0.12 -7.13 16 17 C -0.03 -0.89 9.81 22.74 0.22 -0.67 16 18 C -0.18 -3.77 9.72 22.33 0.22 -3.55 16 19 C 0.15 3.17 6.78 42.57 0.29 3.46 16 20 C -0.10 -1.20 10.16 71.23 0.72 -0.48 16 21 N -0.49 -13.05 9.66 -171.01 -1.65 -14.71 16 22 C 0.19 5.94 5.52 42.91 0.24 6.18 16 23 C -0.07 -2.06 2.68 -11.54 -0.03 -2.09 16 24 C -0.13 -3.05 9.02 71.98 0.65 -2.40 16 25 C -0.12 -3.14 9.17 71.98 0.66 -2.48 16 26 H 0.05 1.85 7.82 -2.39 -0.02 1.83 16 27 H 0.04 1.52 5.27 -2.39 -0.01 1.51 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 33 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 0.73 8.07 -2.38 -0.02 0.71 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.09 2.91 4.32 -2.39 -0.01 2.90 16 38 H 0.07 1.57 7.90 -2.39 -0.02 1.55 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -68.72 349.65 5.94 -62.77 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.97 Total: 17.42 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.79 Total: -16.16 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.35 Total: -69.94 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.31 Total: -39.87 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.85 Total: 45.77 kcal Total: -68.72 5.94 -62.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.509 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds