Wall clock time and date at job start Tue Mar 31 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47262 * 2 1 4 4 H 1.08996 * 109.47090 * 54.99939 * 3 2 1 5 5 C 1.50701 * 109.47510 * 175.00194 * 3 2 1 6 6 H 1.07997 * 120.00202 * 119.99768 * 5 3 2 7 7 C 1.37876 * 119.99598 * 299.72550 * 5 3 2 8 8 N 1.31511 * 120.00355 * 0.27248 * 7 5 3 9 9 Si 1.86802 * 119.99747 * 180.27480 * 7 5 3 10 10 H 1.48496 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47263 * 120.00133 * 9 7 5 12 12 H 1.48503 * 109.47084 * 239.99744 * 9 7 5 13 13 O 1.45202 * 109.46970 * 295.00112 * 3 2 1 14 14 C 1.34711 * 116.99909 * 90.00018 * 13 3 2 15 15 O 1.21472 * 119.99952 * 359.97438 * 14 13 3 16 16 C 1.47723 * 120.00071 * 180.02562 * 14 13 3 17 17 C 1.40077 * 120.56435 * 38.74179 * 16 14 13 18 18 C 1.38345 * 118.28208 * 179.73600 * 17 16 14 19 19 C 1.38356 * 119.30970 * 0.54566 * 18 17 16 20 20 C 1.50701 * 119.45758 * 179.69696 * 19 18 17 21 21 N 1.31932 * 121.08953 * 359.71644 * 19 18 17 22 22 C 1.31681 * 121.88862 * 0.02562 * 21 19 18 23 23 C 1.50695 * 119.72528 * 179.97438 * 22 21 19 24 24 C 1.53006 * 109.47208 * 309.15526 * 23 22 21 25 25 C 1.52998 * 109.47229 * 69.15502 * 23 22 21 26 26 H 1.08999 * 109.47254 * 59.99864 * 1 2 3 27 27 H 1.08998 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46958 * 299.99535 * 1 2 3 29 29 H 1.09005 * 109.47320 * 240.00091 * 2 1 3 30 30 H 1.08999 * 109.47254 * 120.00136 * 2 1 3 31 31 H 0.96995 * 120.00547 * 180.02562 * 8 7 5 32 32 H 1.08002 * 120.85605 * 359.97438 * 17 16 14 33 33 H 1.07999 * 120.34398 * 180.24726 * 18 17 16 34 34 H 1.08999 * 109.46855 * 270.02170 * 20 19 18 35 35 H 1.09000 * 109.46926 * 30.02273 * 20 19 18 36 36 H 1.09000 * 109.47273 * 150.01798 * 20 19 18 37 37 H 1.08999 * 109.47579 * 189.15539 * 23 22 21 38 38 H 1.08999 * 109.46840 * 59.99560 * 24 23 22 39 39 H 1.08994 * 109.47333 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.46608 * 300.00440 * 24 23 22 41 41 H 1.08997 * 109.47707 * 60.00304 * 25 23 22 42 42 H 1.09008 * 109.47159 * 180.02562 * 25 23 22 43 43 H 1.09003 * 109.47112 * 299.99575 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1431 0.8835 1.2306 8 7 3.4060 0.3421 2.1757 9 14 6.0044 0.8926 1.3877 10 1 6.5983 1.5560 0.1993 11 1 6.3940 1.6328 2.6147 12 1 6.5008 -0.5044 1.4739 13 8 1.6559 2.0916 -1.2407 14 6 0.4685 2.7277 -1.2560 15 8 -0.2272 2.7393 -0.2602 16 6 0.0118 3.4101 -2.4840 17 6 0.2437 2.8416 -3.7430 18 6 -0.2091 3.5184 -4.8614 19 6 -0.8601 4.7290 -4.7030 20 6 -1.3487 5.4725 -5.9193 21 7 -1.0598 5.2434 -3.5046 22 6 -0.6524 4.6354 -2.4099 23 6 -0.9060 5.2676 -1.0656 24 6 -0.4240 6.7196 -1.0858 25 6 -2.4046 5.2320 -0.7598 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8289 -0.0521 2.9546 32 1 0.7593 1.8973 -3.8380 33 1 -0.0519 3.1085 -5.8481 34 1 -0.5662 6.1434 -6.2737 35 1 -1.5991 4.7593 -6.7048 36 1 -2.2343 6.0523 -5.6594 37 1 -0.3650 4.7160 -0.2968 38 1 -0.9649 7.2713 -1.8547 39 1 -0.6069 7.1768 -0.1134 40 1 0.6437 6.7450 -1.3038 41 1 -2.7481 4.1976 -0.7453 42 1 -2.5881 5.6897 0.2124 43 1 -2.9456 5.7838 -1.5285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:41 Heat of formation + Delta-G solvation = -75.568853 kcal Electronic energy + Delta-G solvation = -23935.477803 eV Core-core repulsion = 20559.044931 eV Total energy + Delta-G solvation = -3376.432872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76206 -39.18712 -36.15655 -35.21323 -33.63197 -32.91954 -31.39522 -31.35768 -28.27131 -27.22238 -26.94414 -24.31444 -23.35937 -22.81932 -21.02527 -20.28628 -19.61774 -17.46930 -16.79486 -16.49943 -15.86025 -15.59141 -15.00145 -14.67048 -14.54856 -14.25456 -13.94903 -13.40319 -13.17800 -13.02156 -12.87830 -12.67491 -12.37688 -12.25105 -12.05381 -11.89117 -11.54870 -11.41259 -11.27462 -11.17722 -11.00828 -10.98267 -10.71438 -10.59574 -10.27704 -9.87017 -9.80142 -9.76819 -9.41896 -9.30006 -8.83049 -8.80612 -8.48148 -6.21575 -4.28675 0.77690 1.24464 2.95749 3.21552 3.28421 3.32677 3.51864 3.80257 4.11397 4.31090 4.58586 4.72026 4.96314 5.09949 5.13165 5.24227 5.34704 5.38989 5.42368 5.47065 5.63454 5.82804 5.83149 5.86002 5.94187 6.01624 6.04638 6.17948 6.19717 6.23408 6.26573 6.41300 6.42991 6.49672 6.67933 6.83310 6.92171 7.12758 7.18962 7.57969 7.69141 7.88298 7.94371 8.11479 8.56018 8.84161 9.36736 10.85248 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.004385 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.038526 B = 6384.581637 C = 6576.661537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.348 6.348 14 C 0.502 3.498 15 O -0.500 6.500 16 C -0.164 4.164 17 C -0.022 4.022 18 C -0.189 4.189 19 C 0.144 3.856 20 C -0.104 4.104 21 N -0.483 5.483 22 C 0.196 3.804 23 C -0.063 4.063 24 C -0.138 4.138 25 C -0.129 4.129 26 H 0.030 0.970 27 H 0.033 0.967 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.110 0.890 31 H 0.266 0.734 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 7.602 -12.241 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.264 6.264 14 C 0.345 3.655 15 O -0.391 6.391 16 C -0.167 4.167 17 C -0.048 4.048 18 C -0.209 4.209 19 C 0.006 3.994 20 C -0.161 4.161 21 N -0.193 5.193 22 C 0.058 3.942 23 C -0.082 4.082 24 C -0.196 4.196 25 C -0.187 4.187 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.280 8.270 -11.679 17.055 hybrid contribution 1.423 -1.095 0.112 1.799 sum -7.857 7.175 -11.566 15.716 Atomic orbital electron populations 1.21866 0.98330 0.99071 1.00779 1.22029 0.92643 0.99279 1.03418 1.20743 0.95118 0.88769 0.78480 0.93318 1.21066 0.89589 1.39118 1.06177 0.91292 1.24871 0.99227 0.94719 0.95022 1.69890 1.35324 1.37901 1.09356 0.86244 0.83901 0.77905 0.78258 1.19490 1.20707 1.20689 1.86583 1.33276 1.62237 1.44324 1.20689 0.81201 0.76746 0.86848 1.90762 1.55404 1.57916 1.34986 1.20279 1.04826 0.98172 0.93422 1.21844 0.92891 0.99377 0.90663 1.21872 1.02419 0.96861 0.99745 1.21468 0.92692 0.91923 0.93287 1.20737 1.02154 1.00126 0.93065 1.67348 1.20077 1.34257 0.97588 1.21286 0.89199 0.89015 0.94716 1.20463 0.98968 0.96958 0.91789 1.21767 1.01001 0.94826 1.01978 1.21646 0.93661 1.02118 1.01256 0.95055 0.94767 0.92683 0.93974 0.87245 0.92400 0.83535 0.84295 0.90198 0.90607 0.90380 0.87445 0.91759 0.92218 0.93036 0.92460 0.92122 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.78 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.78 2.25 -27.88 -0.06 5.72 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.42 8.89 -34.44 -0.31 -14.72 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.69 11.30 55.43 0.63 -24.06 16 9 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 O -0.35 -8.22 9.68 -40.52 -0.39 -8.61 16 14 C 0.50 10.61 5.47 34.61 0.19 10.80 16 15 O -0.50 -11.25 11.71 -19.24 -0.23 -11.47 16 16 C -0.16 -2.89 5.82 -104.83 -0.61 -3.50 16 17 C -0.02 -0.33 9.83 -38.85 -0.38 -0.71 16 18 C -0.19 -2.25 9.72 -39.50 -0.38 -2.64 16 19 C 0.14 1.78 6.78 -82.51 -0.56 1.22 16 20 C -0.10 -0.85 10.16 36.01 0.37 -0.49 16 21 N -0.48 -7.09 9.65 -5.41 -0.05 -7.15 16 22 C 0.20 3.21 5.52 -82.16 -0.45 2.76 16 23 C -0.06 -0.99 2.67 -91.77 -0.25 -1.24 16 24 C -0.14 -1.87 9.01 37.16 0.33 -1.54 16 25 C -0.13 -1.80 9.17 37.16 0.34 -1.46 16 26 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 2.90 5.96 -51.93 -0.31 2.59 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 32 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.11 1.98 5.21 -51.93 -0.27 1.71 16 38 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -29.78 351.51 -8.16 -37.94 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.70 Total: 2.64 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.70 Total: -10.40 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.57 Total: -31.21 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.62 Total: -20.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.78 -8.16 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.634 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds