Wall clock time and date at job start Tue Mar 31 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47262 * 2 1 4 4 H 1.08996 * 109.47090 * 54.99939 * 3 2 1 5 5 C 1.50701 * 109.47510 * 175.00194 * 3 2 1 6 6 H 1.07997 * 120.00202 * 119.99768 * 5 3 2 7 7 C 1.37876 * 119.99598 * 299.72550 * 5 3 2 8 8 N 1.31511 * 120.00355 * 0.27248 * 7 5 3 9 9 Si 1.86802 * 119.99747 * 180.27480 * 7 5 3 10 10 H 1.48496 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47263 * 120.00133 * 9 7 5 12 12 H 1.48503 * 109.47084 * 239.99744 * 9 7 5 13 13 O 1.45202 * 109.46970 * 295.00112 * 3 2 1 14 14 C 1.34711 * 116.99909 * 90.00018 * 13 3 2 15 15 O 1.21472 * 119.99952 * 359.97438 * 14 13 3 16 16 C 1.47723 * 120.00071 * 180.02562 * 14 13 3 17 17 C 1.40077 * 120.56435 * 38.74179 * 16 14 13 18 18 C 1.38345 * 118.28208 * 179.73600 * 17 16 14 19 19 C 1.38356 * 119.30970 * 0.54566 * 18 17 16 20 20 C 1.50701 * 119.45758 * 179.69696 * 19 18 17 21 21 N 1.31932 * 121.08953 * 359.71644 * 19 18 17 22 22 C 1.31681 * 121.88862 * 0.02562 * 21 19 18 23 23 C 1.50695 * 119.72528 * 179.97438 * 22 21 19 24 24 C 1.53006 * 109.47208 * 309.15526 * 23 22 21 25 25 C 1.52998 * 109.47229 * 69.15502 * 23 22 21 26 26 H 1.08999 * 109.47254 * 59.99864 * 1 2 3 27 27 H 1.08998 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46958 * 299.99535 * 1 2 3 29 29 H 1.09005 * 109.47320 * 240.00091 * 2 1 3 30 30 H 1.08999 * 109.47254 * 120.00136 * 2 1 3 31 31 H 0.96995 * 120.00547 * 180.02562 * 8 7 5 32 32 H 1.08002 * 120.85605 * 359.97438 * 17 16 14 33 33 H 1.07999 * 120.34398 * 180.24726 * 18 17 16 34 34 H 1.08999 * 109.46855 * 270.02170 * 20 19 18 35 35 H 1.09000 * 109.46926 * 30.02273 * 20 19 18 36 36 H 1.09000 * 109.47273 * 150.01798 * 20 19 18 37 37 H 1.08999 * 109.47579 * 189.15539 * 23 22 21 38 38 H 1.08999 * 109.46840 * 59.99560 * 24 23 22 39 39 H 1.08994 * 109.47333 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.46608 * 300.00440 * 24 23 22 41 41 H 1.08997 * 109.47707 * 60.00304 * 25 23 22 42 42 H 1.09008 * 109.47159 * 180.02562 * 25 23 22 43 43 H 1.09003 * 109.47112 * 299.99575 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1431 0.8835 1.2306 8 7 3.4060 0.3421 2.1757 9 14 6.0044 0.8926 1.3877 10 1 6.5983 1.5560 0.1993 11 1 6.3940 1.6328 2.6147 12 1 6.5008 -0.5044 1.4739 13 8 1.6559 2.0916 -1.2407 14 6 0.4685 2.7277 -1.2560 15 8 -0.2272 2.7393 -0.2602 16 6 0.0118 3.4101 -2.4840 17 6 0.2437 2.8416 -3.7430 18 6 -0.2091 3.5184 -4.8614 19 6 -0.8601 4.7290 -4.7030 20 6 -1.3487 5.4725 -5.9193 21 7 -1.0598 5.2434 -3.5046 22 6 -0.6524 4.6354 -2.4099 23 6 -0.9060 5.2676 -1.0656 24 6 -0.4240 6.7196 -1.0858 25 6 -2.4046 5.2320 -0.7598 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8289 -0.0521 2.9546 32 1 0.7593 1.8973 -3.8380 33 1 -0.0519 3.1085 -5.8481 34 1 -0.5662 6.1434 -6.2737 35 1 -1.5991 4.7593 -6.7048 36 1 -2.2343 6.0523 -5.6594 37 1 -0.3650 4.7160 -0.2968 38 1 -0.9649 7.2713 -1.8547 39 1 -0.6069 7.1768 -0.1134 40 1 0.6437 6.7450 -1.3038 41 1 -2.7481 4.1976 -0.7453 42 1 -2.5881 5.6897 0.2124 43 1 -2.9456 5.7838 -1.5285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:40 Heat of formation + Delta-G solvation = -90.930021 kcal Electronic energy + Delta-G solvation = -23936.143913 eV Core-core repulsion = 20559.044931 eV Total energy + Delta-G solvation = -3377.098982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.07067 -40.74949 -37.80490 -36.52972 -35.54178 -34.16906 -33.30286 -32.41907 -29.60407 -28.90522 -28.06837 -25.75807 -24.97346 -24.12176 -22.59587 -21.49974 -21.41475 -19.18125 -18.58725 -17.91603 -17.58305 -16.74787 -16.61001 -16.44982 -15.68379 -15.44030 -15.15097 -14.91257 -14.78867 -14.37999 -14.17061 -13.91644 -13.59468 -13.40788 -13.30417 -13.20527 -13.15763 -12.99936 -12.92948 -12.84807 -12.59151 -12.34785 -12.17284 -12.13916 -11.98518 -11.72361 -11.54193 -11.21224 -10.92700 -10.83055 -10.58054 -10.49784 -9.90584 -8.29441 -6.46312 -0.41120 0.14132 1.38232 1.40703 1.42368 1.54654 1.92699 2.39064 2.62441 3.00280 3.05486 3.48836 3.70507 3.79134 3.95748 4.14332 4.19613 4.27917 4.33642 4.34634 4.36488 4.53968 4.67610 4.71826 4.76451 4.80063 4.82355 4.84217 4.90771 4.97429 5.04481 5.07805 5.11675 5.17946 5.18320 5.27382 5.31906 5.39562 5.48790 5.63487 5.64643 5.92547 6.07388 6.57281 6.83548 6.90837 7.24910 8.77565 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.004385 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.038526 B = 6384.581637 C = 6576.661537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.226 3.774 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.063 0.937 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.979 3.021 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.270 1.270 13 O -0.358 6.358 14 C 0.500 3.500 15 O -0.522 6.522 16 C -0.199 4.199 17 C -0.029 4.029 18 C -0.175 4.175 19 C 0.147 3.853 20 C -0.101 4.101 21 N -0.491 5.491 22 C 0.190 3.810 23 C -0.069 4.069 24 C -0.130 4.130 25 C -0.121 4.121 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.271 0.729 32 H 0.152 0.848 33 H 0.183 0.817 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 8.257 -14.949 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.588 4.588 6 H 0.081 0.919 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.802 3.198 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.195 1.195 13 O -0.274 6.274 14 C 0.345 3.655 15 O -0.414 6.414 16 C -0.203 4.203 17 C -0.054 4.054 18 C -0.194 4.194 19 C 0.009 3.991 20 C -0.158 4.158 21 N -0.201 5.201 22 C 0.052 3.948 23 C -0.088 4.088 24 C -0.187 4.187 25 C -0.178 4.178 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.200 0.800 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.409 8.930 -14.396 19.378 hybrid contribution 1.379 -1.229 0.855 2.035 sum -8.031 7.700 -13.541 17.525 Atomic orbital electron populations 1.21711 0.96329 1.00626 1.00009 1.21867 0.94369 0.97931 1.02478 1.20435 0.94579 0.89336 0.78357 0.97324 1.21322 0.90428 1.40214 1.06832 0.91895 1.25757 1.04114 0.93801 0.94276 1.70006 1.37353 1.37917 1.09727 0.85192 0.77819 0.78409 0.78343 1.18992 1.20097 1.19487 1.86559 1.34971 1.62977 1.42886 1.21354 0.80007 0.76060 0.88060 1.90738 1.55696 1.58551 1.36369 1.20188 1.07789 0.99475 0.92804 1.22047 0.93064 0.99857 0.90432 1.22310 1.00485 0.96095 1.00546 1.22327 0.90966 0.92094 0.93716 1.20898 1.02517 1.00741 0.91611 1.67446 1.20476 1.34264 0.97952 1.21302 0.89255 0.88731 0.95556 1.20435 0.99630 0.97731 0.91011 1.21708 1.00310 0.93531 1.03165 1.21580 0.92523 1.01282 1.02431 0.94802 0.91888 0.94440 0.93432 0.89381 0.91959 0.83034 0.79955 0.88588 0.87650 0.90186 0.91030 0.90570 0.90880 0.94104 0.94259 0.90875 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.56 71.98 0.62 -5.14 16 2 C -0.13 -6.50 5.49 30.59 0.17 -6.33 16 3 C 0.23 12.45 2.25 29.85 0.07 12.52 16 4 H 0.01 0.55 7.16 -2.39 -0.02 0.54 16 5 C -0.55 -31.53 8.89 25.60 0.23 -31.30 16 6 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 7 C 0.02 1.14 5.30 84.65 0.45 1.58 16 8 N -0.91 -52.10 11.30 21.45 0.24 -51.86 16 9 Si 0.98 43.01 29.54 68.60 2.03 45.04 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 O -0.36 -17.74 9.68 -56.21 -0.54 -18.29 16 14 C 0.50 22.33 5.47 70.33 0.39 22.72 16 15 O -0.52 -25.16 11.71 19.93 0.23 -24.93 16 16 C -0.20 -7.18 5.82 -20.00 -0.12 -7.30 16 17 C -0.03 -0.81 9.83 22.74 0.22 -0.59 16 18 C -0.18 -3.60 9.72 22.32 0.22 -3.39 16 19 C 0.15 3.15 6.78 42.57 0.29 3.44 16 20 C -0.10 -1.20 10.16 71.24 0.72 -0.48 16 21 N -0.49 -13.64 9.65 -171.02 -1.65 -15.29 16 22 C 0.19 6.24 5.52 42.90 0.24 6.48 16 23 C -0.07 -2.24 2.67 -11.54 -0.03 -2.27 16 24 C -0.13 -3.50 9.01 71.98 0.65 -2.85 16 25 C -0.12 -3.40 9.17 71.98 0.66 -2.74 16 26 H 0.03 1.45 6.06 -2.39 -0.01 1.44 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.04 1.76 7.79 -2.39 -0.02 1.74 16 29 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.09 4.85 5.96 -2.39 -0.01 4.83 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.70 8.07 -2.39 -0.02 0.68 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 2.84 5.21 -2.39 -0.01 2.83 16 38 H 0.08 1.86 7.89 -2.39 -0.02 1.84 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -68.05 351.51 6.06 -61.99 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.99 Total: 18.98 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 4.76 Total: -15.64 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -1.41 Total: -67.14 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.31 Total: -43.22 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -68.05 6.06 -61.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.944 kcal (2) G-P(sol) polarization free energy of solvation -68.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds