Wall clock time and date at job start Tue Mar 31 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47651 * 2 1 4 4 H 1.09000 * 109.46899 * 305.00395 * 3 2 1 5 5 N 1.46503 * 109.47078 * 64.99761 * 3 2 1 6 6 C 1.34768 * 119.99956 * 205.00303 * 5 3 2 7 7 O 1.21283 * 120.00153 * 0.02562 * 6 5 3 8 8 C 1.50707 * 119.99792 * 180.02562 * 6 5 3 9 9 C 1.50701 * 109.46977 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.12547 * 264.99579 * 9 8 6 11 11 C 1.38611 * 120.25133 * 180.30203 * 10 9 8 12 12 C 1.38661 * 120.49834 * 359.43795 * 11 10 9 13 13 C 1.37598 * 120.24462 * 0.56532 * 12 11 10 14 14 C 1.40693 * 120.13116 * 85.02206 * 9 8 6 15 15 C 1.41397 * 120.24389 * 359.95203 * 14 9 8 16 16 H 1.08003 * 119.99955 * 334.08061 * 15 14 9 17 17 C 1.39940 * 120.00210 * 154.08724 * 15 14 9 18 18 N 1.30822 * 119.99912 * 343.62218 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 163.63321 * 17 15 14 20 20 H 1.48496 * 109.47262 * 59.99447 * 19 17 15 21 21 H 1.48504 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46694 * 299.99081 * 19 17 15 23 23 C 1.52998 * 109.47296 * 185.00255 * 3 2 1 24 24 H 1.09005 * 109.46833 * 299.99717 * 23 3 2 25 25 C 1.52991 * 109.47476 * 59.99852 * 23 3 2 26 26 O 1.42900 * 109.47027 * 179.97438 * 23 3 2 27 27 H 1.09009 * 109.47142 * 59.99721 * 1 2 3 28 28 H 1.08990 * 109.47785 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47161 * 300.00344 * 1 2 3 30 30 H 1.09006 * 109.47312 * 239.99917 * 2 1 3 31 31 H 1.09004 * 109.47546 * 120.00482 * 2 1 3 32 32 H 0.97001 * 119.99456 * 25.00927 * 5 3 2 33 33 H 1.08998 * 109.47152 * 59.99513 * 8 6 5 34 34 H 1.09003 * 109.46597 * 299.99418 * 8 6 5 35 35 H 1.08001 * 119.87531 * 0.02562 * 10 9 8 36 36 H 1.07996 * 119.75611 * 179.70394 * 11 10 9 37 37 H 1.07998 * 119.87738 * 180.30536 * 12 11 10 38 38 H 1.08001 * 120.12776 * 179.74520 * 13 12 11 39 39 H 0.97001 * 120.00439 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.47200 * 60.00090 * 25 23 3 41 41 H 1.09000 * 109.47304 * 179.97438 * 25 23 3 42 42 H 1.09000 * 109.47519 * 300.00007 * 25 23 3 43 43 H 0.96708 * 113.99747 * 59.99837 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 1.5257 3.4384 1.2995 7 8 1.7321 4.1028 0.3061 8 6 1.1276 4.1122 2.5874 9 6 1.0567 5.6023 2.3737 10 6 2.1394 6.3960 2.6771 11 6 2.0749 7.7676 2.4874 12 6 0.9257 8.3545 1.9799 13 6 -0.1689 7.5805 1.6696 14 6 -0.1167 6.1876 1.8637 15 6 -1.2352 5.3822 1.5479 16 1 -1.0964 4.3425 1.2903 17 6 -2.5218 5.9321 1.5692 18 7 -2.7366 7.0705 2.1768 19 14 -3.9327 5.0404 0.7302 20 1 -4.1055 3.6993 1.3440 21 1 -5.1826 5.8250 0.8961 22 1 -3.6317 4.8879 -0.7160 23 6 3.5649 1.4442 -0.1258 24 1 3.9994 0.9052 0.7161 25 6 3.9696 0.7602 -1.4330 26 8 4.0412 2.7915 -0.1264 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.4872 1.5661 2.0463 33 1 1.8665 3.8899 3.3573 34 1 0.1515 3.7440 2.9034 35 1 3.0412 5.9490 3.0687 36 1 2.9275 8.3833 2.7326 37 1 0.8881 9.4235 1.8314 38 1 -1.0644 8.0401 1.2783 39 1 -3.6283 7.4520 2.1913 40 1 3.5350 1.2993 -2.2749 41 1 5.0559 0.7619 -1.5228 42 1 3.6063 -0.2674 -1.4331 43 1 3.8203 3.2871 0.6741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836862119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:44 Heat of formation + Delta-G solvation = -87.190344 kcal Electronic energy + Delta-G solvation = -23998.161940 eV Core-core repulsion = 20621.225122 eV Total energy + Delta-G solvation = -3376.936818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.82006 -37.84442 -36.78891 -35.05686 -33.59233 -32.41385 -31.45315 -30.63862 -29.42284 -27.24495 -25.70617 -24.78963 -22.51565 -21.00100 -20.83776 -20.33116 -19.27898 -17.41566 -17.14442 -16.40215 -16.16904 -15.39890 -15.05276 -14.51852 -14.27631 -14.07117 -13.73573 -13.45070 -13.14831 -13.07063 -12.69541 -12.55272 -12.30148 -12.22325 -11.92529 -11.72942 -11.55120 -11.33508 -11.16171 -11.04659 -10.95968 -10.93897 -10.76617 -10.66139 -10.38436 -9.99995 -9.45732 -9.35073 -9.14621 -9.10970 -8.59812 -7.28011 -7.26014 -6.71051 -4.31484 2.82002 2.99547 3.07000 3.10286 3.29692 3.30809 3.62181 3.95177 4.33530 4.67624 4.68981 4.90488 4.96499 5.13803 5.28540 5.38248 5.50181 5.56663 5.73326 5.79243 5.80595 5.83537 5.94569 6.00690 6.07285 6.11800 6.20124 6.26440 6.31126 6.45414 6.54053 6.79869 6.83329 7.11343 7.32553 7.45528 7.66906 7.81262 7.92074 7.98166 8.10333 8.16533 8.34439 8.67742 8.86155 8.94545 9.04797 10.23217 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.005903 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.963482 B = 4742.017551 C = 6309.952659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.111 3.889 4 H 0.094 0.906 5 N -0.744 5.744 6 C 0.506 3.494 7 O -0.504 6.504 8 C -0.071 4.071 9 C -0.181 4.181 10 C -0.081 4.081 11 C -0.239 4.239 12 C -0.107 4.107 13 C -0.159 4.159 14 C 0.130 3.870 15 C -0.456 4.456 16 H 0.073 0.927 17 C 0.077 3.923 18 N -0.796 5.796 19 Si 0.902 3.098 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.091 3.909 24 H 0.048 0.952 25 C -0.146 4.146 26 O -0.555 6.555 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.395 0.605 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -13.787 -0.637 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.005 3.995 4 H 0.112 0.888 5 N -0.399 5.399 6 C 0.293 3.707 7 O -0.376 6.376 8 C -0.111 4.111 9 C -0.183 4.183 10 C -0.099 4.099 11 C -0.258 4.258 12 C -0.126 4.126 13 C -0.178 4.178 14 C 0.127 3.873 15 C -0.486 4.486 16 H 0.091 0.909 17 C -0.140 4.140 18 N -0.421 5.421 19 Si 0.727 3.273 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.189 1.189 23 C 0.031 3.969 24 H 0.066 0.934 25 C -0.204 4.204 26 O -0.362 6.362 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.229 0.771 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 5.696 -13.271 -1.896 14.566 hybrid contribution -1.088 -0.459 0.607 1.328 sum 4.608 -13.730 -1.288 14.540 Atomic orbital electron populations 1.21760 0.95003 1.01388 1.02871 1.21845 0.96925 0.95294 1.02740 1.21739 0.94965 0.93526 0.89249 0.88796 1.46308 1.73243 1.07716 1.12664 1.21378 0.76259 0.81115 0.91931 1.90756 1.47010 1.63537 1.36343 1.20282 1.02371 0.95136 0.93322 1.19030 0.96968 0.91439 1.10882 1.20284 0.95866 0.93722 1.00070 1.20302 0.98218 0.94364 1.12918 1.20676 0.94254 0.97404 1.00216 1.21287 0.97570 0.94306 1.04642 1.17319 0.90872 0.92057 0.87021 1.19422 0.90340 0.97622 1.41217 0.90891 1.25863 1.00353 0.94719 0.93060 1.69810 1.23624 1.17176 1.31515 0.86471 0.79682 0.80121 0.81052 1.19147 1.20347 1.18910 1.22144 0.92581 0.84351 0.97843 0.93384 1.21810 1.02087 0.99650 0.96836 1.86492 1.79634 1.23848 1.46212 0.92463 0.92770 0.92162 0.90341 0.91579 0.77149 0.90720 0.88646 0.89788 0.89697 0.89631 0.86608 0.90944 0.91662 0.92010 0.91077 0.77380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.80 37.15 0.36 -1.21 16 2 C -0.13 -1.22 5.26 -26.73 -0.14 -1.36 16 3 C 0.11 1.42 1.95 -67.93 -0.13 1.29 16 4 H 0.09 1.53 7.58 -51.93 -0.39 1.13 16 5 N -0.74 -10.07 4.44 -53.80 -0.24 -10.31 16 6 C 0.51 9.26 6.06 -10.99 -0.07 9.19 16 7 O -0.50 -11.57 14.07 -11.85 -0.17 -11.74 16 8 C -0.07 -1.34 5.18 -29.03 -0.15 -1.49 16 9 C -0.18 -4.30 4.43 -103.91 -0.46 -4.76 16 10 C -0.08 -1.85 9.66 -39.66 -0.38 -2.24 16 11 C -0.24 -5.57 10.05 -39.29 -0.39 -5.97 16 12 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 13 C -0.16 -4.27 8.68 -38.87 -0.34 -4.60 16 14 C 0.13 3.46 5.56 -106.83 -0.59 2.86 16 15 C -0.46 -11.97 8.14 -37.74 -0.31 -12.28 16 16 H 0.07 1.86 6.68 -52.48 -0.35 1.51 16 17 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 18 N -0.80 -20.61 10.97 55.55 0.61 -20.00 16 19 Si 0.90 18.96 29.59 -169.99 -5.03 13.93 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 23 C 0.09 1.16 3.42 -26.74 -0.09 1.07 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 C -0.15 -1.56 9.22 37.15 0.34 -1.22 16 26 O -0.55 -9.33 12.47 -52.64 -0.66 -9.99 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 30 H 0.08 0.63 6.17 -51.93 -0.32 0.31 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.39 4.17 8.60 -40.82 -0.35 3.82 16 33 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.10 1.79 7.06 -51.93 -0.37 1.43 16 35 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.56 6.32 -51.93 -0.33 0.24 16 43 H 0.38 6.39 6.54 45.56 0.30 6.69 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -30.93 347.74 -8.98 -39.91 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -5.90 Total: 14.83 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.84 Total: -21.88 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.37 Total: -30.31 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.82 Total: -21.73 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.93 -8.98 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836862119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.277 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds