Wall clock time and date at job start Tue Mar 31 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47651 * 2 1 4 4 H 1.09000 * 109.46899 * 305.00395 * 3 2 1 5 5 N 1.46503 * 109.47078 * 64.99761 * 3 2 1 6 6 C 1.34768 * 119.99956 * 205.00303 * 5 3 2 7 7 O 1.21283 * 120.00153 * 0.02562 * 6 5 3 8 8 C 1.50707 * 119.99792 * 180.02562 * 6 5 3 9 9 C 1.50701 * 109.46977 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.12547 * 264.99579 * 9 8 6 11 11 C 1.38611 * 120.25133 * 180.30203 * 10 9 8 12 12 C 1.38661 * 120.49834 * 359.43795 * 11 10 9 13 13 C 1.37598 * 120.24462 * 0.56532 * 12 11 10 14 14 C 1.40693 * 120.13116 * 85.02206 * 9 8 6 15 15 C 1.41397 * 120.24389 * 359.95203 * 14 9 8 16 16 H 1.08003 * 119.99955 * 334.08061 * 15 14 9 17 17 C 1.39940 * 120.00210 * 154.08724 * 15 14 9 18 18 N 1.30822 * 119.99912 * 343.62218 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 163.63321 * 17 15 14 20 20 H 1.48496 * 109.47262 * 59.99447 * 19 17 15 21 21 H 1.48504 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46694 * 299.99081 * 19 17 15 23 23 C 1.52998 * 109.47296 * 185.00255 * 3 2 1 24 24 H 1.09005 * 109.46833 * 299.99717 * 23 3 2 25 25 C 1.52991 * 109.47476 * 59.99852 * 23 3 2 26 26 O 1.42900 * 109.47027 * 179.97438 * 23 3 2 27 27 H 1.09009 * 109.47142 * 59.99721 * 1 2 3 28 28 H 1.08990 * 109.47785 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47161 * 300.00344 * 1 2 3 30 30 H 1.09006 * 109.47312 * 239.99917 * 2 1 3 31 31 H 1.09004 * 109.47546 * 120.00482 * 2 1 3 32 32 H 0.97001 * 119.99456 * 25.00927 * 5 3 2 33 33 H 1.08998 * 109.47152 * 59.99513 * 8 6 5 34 34 H 1.09003 * 109.46597 * 299.99418 * 8 6 5 35 35 H 1.08001 * 119.87531 * 0.02562 * 10 9 8 36 36 H 1.07996 * 119.75611 * 179.70394 * 11 10 9 37 37 H 1.07998 * 119.87738 * 180.30536 * 12 11 10 38 38 H 1.08001 * 120.12776 * 179.74520 * 13 12 11 39 39 H 0.97001 * 120.00439 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.47200 * 60.00090 * 25 23 3 41 41 H 1.09000 * 109.47304 * 179.97438 * 25 23 3 42 42 H 1.09000 * 109.47519 * 300.00007 * 25 23 3 43 43 H 0.96708 * 113.99747 * 59.99837 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 1.5257 3.4384 1.2995 7 8 1.7321 4.1028 0.3061 8 6 1.1276 4.1122 2.5874 9 6 1.0567 5.6023 2.3737 10 6 2.1394 6.3960 2.6771 11 6 2.0749 7.7676 2.4874 12 6 0.9257 8.3545 1.9799 13 6 -0.1689 7.5805 1.6696 14 6 -0.1167 6.1876 1.8637 15 6 -1.2352 5.3822 1.5479 16 1 -1.0964 4.3425 1.2903 17 6 -2.5218 5.9321 1.5692 18 7 -2.7366 7.0705 2.1768 19 14 -3.9327 5.0404 0.7302 20 1 -4.1055 3.6993 1.3440 21 1 -5.1826 5.8250 0.8961 22 1 -3.6317 4.8879 -0.7160 23 6 3.5649 1.4442 -0.1258 24 1 3.9994 0.9052 0.7161 25 6 3.9696 0.7602 -1.4330 26 8 4.0412 2.7915 -0.1264 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.4872 1.5661 2.0463 33 1 1.8665 3.8899 3.3573 34 1 0.1515 3.7440 2.9034 35 1 3.0412 5.9490 3.0687 36 1 2.9275 8.3833 2.7326 37 1 0.8881 9.4235 1.8314 38 1 -1.0644 8.0401 1.2783 39 1 -3.6283 7.4520 2.1913 40 1 3.5350 1.2993 -2.2749 41 1 5.0559 0.7619 -1.5228 42 1 3.6063 -0.2674 -1.4331 43 1 3.8203 3.2871 0.6741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836862119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:44 Heat of formation + Delta-G solvation = -106.878989 kcal Electronic energy + Delta-G solvation = -23999.015704 eV Core-core repulsion = 20621.225122 eV Total energy + Delta-G solvation = -3377.790581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15238 -39.45488 -38.24408 -36.19124 -35.48769 -33.76326 -33.00229 -31.55886 -31.32328 -28.78372 -27.17076 -26.36175 -23.39154 -22.82015 -22.37102 -21.45548 -20.90039 -19.05249 -18.57288 -17.78450 -17.45305 -17.09478 -16.29721 -16.23317 -15.68038 -15.43640 -15.00453 -14.79290 -14.67542 -14.44572 -14.35323 -13.66671 -13.47200 -13.36917 -13.25541 -13.04031 -12.92454 -12.90526 -12.75644 -12.61494 -12.48087 -12.24180 -12.12277 -11.78339 -11.71535 -11.30418 -11.19506 -11.13682 -11.02582 -10.65040 -9.80742 -9.20783 -9.13861 -8.58886 -6.28058 1.01121 1.15492 1.33987 1.43951 1.53577 1.86973 2.18775 2.37874 2.79870 3.32389 3.73091 3.77862 4.00119 4.09003 4.19446 4.29211 4.39173 4.43107 4.49945 4.59664 4.64478 4.73090 4.77293 4.81000 4.84128 4.94416 5.03540 5.08756 5.11777 5.20441 5.22106 5.28591 5.38140 5.41100 5.56811 5.65732 5.79454 6.05491 6.18451 6.23481 6.43492 6.61870 6.73898 6.80233 7.00496 7.13425 7.51660 8.37442 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.005903 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.963482 B = 4742.017551 C = 6309.952659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C 0.112 3.888 4 H 0.053 0.947 5 N -0.722 5.722 6 C 0.512 3.488 7 O -0.558 6.558 8 C -0.070 4.070 9 C -0.185 4.185 10 C -0.090 4.090 11 C -0.242 4.242 12 C -0.119 4.119 13 C -0.195 4.195 14 C 0.096 3.904 15 C -0.481 4.481 16 H 0.071 0.929 17 C 0.036 3.964 18 N -0.827 5.827 19 Si 0.968 3.032 20 H -0.252 1.252 21 H -0.267 1.267 22 H -0.273 1.273 23 C 0.084 3.916 24 H 0.075 0.925 25 C -0.145 4.145 26 O -0.581 6.581 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.414 0.586 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.285 0.715 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -16.811 0.207 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.007 3.993 4 H 0.071 0.929 5 N -0.377 5.377 6 C 0.299 3.701 7 O -0.435 6.435 8 C -0.110 4.110 9 C -0.186 4.186 10 C -0.108 4.108 11 C -0.262 4.262 12 C -0.137 4.137 13 C -0.214 4.214 14 C 0.094 3.906 15 C -0.511 4.511 16 H 0.089 0.911 17 C -0.178 4.178 18 N -0.453 5.453 19 Si 0.789 3.211 20 H -0.176 1.176 21 H -0.191 1.191 22 H -0.198 1.198 23 C 0.024 3.976 24 H 0.093 0.907 25 C -0.202 4.202 26 O -0.388 6.388 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.251 0.749 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.662 -16.349 -1.017 17.684 hybrid contribution -1.271 0.472 0.371 1.406 sum 5.390 -15.877 -0.646 16.780 Atomic orbital electron populations 1.21779 0.95811 1.02356 1.01278 1.21841 0.96065 0.92767 1.05099 1.21791 0.95303 0.95082 0.87128 0.92908 1.46037 1.71438 1.06270 1.13920 1.21166 0.75684 0.82397 0.90807 1.90745 1.49804 1.65072 1.37880 1.20296 1.03644 0.92258 0.94769 1.19539 0.96026 0.94265 1.08815 1.20742 0.96879 0.93717 0.99480 1.20718 0.98441 0.95266 1.11730 1.20938 0.94275 0.98325 1.00193 1.21288 0.97910 0.95239 1.06995 1.17726 0.92505 0.92287 0.88127 1.19571 0.91206 0.97679 1.42671 0.91108 1.26639 1.02530 0.95453 0.93173 1.69877 1.24468 1.18505 1.32490 0.85469 0.76790 0.79645 0.79155 1.17576 1.19138 1.19835 1.22462 0.92159 0.82973 0.99959 0.90679 1.21870 1.02313 1.01015 0.94994 1.86486 1.80105 1.25971 1.46276 0.94544 0.90500 0.93343 0.88375 0.88674 0.74942 0.86733 0.88771 0.86245 0.86817 0.87953 0.88794 0.90440 0.93586 0.91671 0.87656 0.77896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.80 71.98 0.71 -2.13 16 2 C -0.12 -1.83 5.26 30.59 0.16 -1.67 16 3 C 0.11 2.71 1.95 44.99 0.09 2.79 16 4 H 0.05 1.75 7.58 -2.39 -0.02 1.73 16 5 N -0.72 -18.31 4.44 -442.53 -1.96 -20.27 16 6 C 0.51 18.50 6.06 87.66 0.53 19.03 16 7 O -0.56 -26.25 14.07 13.60 0.19 -26.06 16 8 C -0.07 -2.56 5.18 29.10 0.15 -2.41 16 9 C -0.18 -8.76 4.43 -19.41 -0.09 -8.85 16 10 C -0.09 -4.01 9.66 22.22 0.21 -3.80 16 11 C -0.24 -11.12 10.05 22.46 0.23 -10.90 16 12 C -0.12 -5.97 10.02 22.22 0.22 -5.75 16 13 C -0.19 -10.95 8.68 22.73 0.20 -10.75 16 14 C 0.10 5.27 5.56 -21.29 -0.12 5.16 16 15 C -0.48 -26.13 8.14 23.46 0.19 -25.94 16 16 H 0.07 3.73 6.68 -2.91 -0.02 3.71 16 17 C 0.04 1.88 5.16 85.26 0.44 2.32 16 18 N -0.83 -44.42 10.97 21.82 0.24 -44.18 16 19 Si 0.97 39.60 29.59 68.60 2.03 41.63 16 20 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 C 0.08 1.96 3.42 30.59 0.10 2.06 16 24 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 25 C -0.14 -2.76 9.22 71.98 0.66 -2.10 16 26 O -0.58 -19.30 12.47 -132.34 -1.65 -20.95 16 27 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 0.99 7.75 -2.39 -0.02 0.97 16 30 H 0.10 1.17 6.17 -2.38 -0.01 1.16 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.41 7.47 8.60 -92.71 -0.80 6.67 16 33 H 0.11 3.20 8.05 -2.39 -0.02 3.18 16 34 H 0.09 3.47 7.06 -2.39 -0.02 3.45 16 35 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.09 5.55 6.22 -2.91 -0.02 5.53 16 39 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 40 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 42 H 0.10 1.25 6.32 -2.39 -0.02 1.24 16 43 H 0.37 12.51 6.54 -74.05 -0.48 12.03 16 Total: -1.00 -71.69 347.74 2.28 -69.41 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.26 Total: 43.35 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 3.69 Total: -42.92 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -1.72 Total: -64.45 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -1.46 Total: -47.01 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -71.69 2.28 -69.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836862119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.473 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds