Wall clock time and date at job start Tue Mar 31 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 H 1.09004 * 109.46867 * 54.99964 * 3 2 1 5 5 N 1.46502 * 109.47062 * 295.00641 * 3 2 1 6 6 C 1.34771 * 120.00255 * 85.00275 * 5 3 2 7 7 O 1.21278 * 120.00254 * 359.97438 * 6 5 3 8 8 C 1.50698 * 119.99769 * 180.02562 * 6 5 3 9 9 C 1.50702 * 109.46890 * 179.97438 * 8 6 5 10 10 C 1.37637 * 120.12998 * 264.99649 * 9 8 6 11 11 C 1.38610 * 120.25258 * 179.97438 * 10 9 8 12 12 C 1.38660 * 120.50023 * 0.02562 * 11 10 9 13 13 C 1.37590 * 120.24782 * 0.03254 * 12 11 10 14 14 C 1.40701 * 120.12920 * 84.72468 * 9 8 6 15 15 C 1.41393 * 120.24258 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00196 * 333.90322 * 15 14 9 17 17 C 1.39951 * 120.00056 * 153.89988 * 15 14 9 18 18 N 1.30820 * 120.00005 * 343.71228 * 17 15 14 19 19 Si 1.86797 * 120.00078 * 163.70544 * 17 15 14 20 20 H 1.48504 * 109.46852 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47075 * 119.99963 * 19 17 15 22 22 H 1.48499 * 109.47161 * 240.00264 * 19 17 15 23 23 C 1.52998 * 109.47200 * 175.00472 * 3 2 1 24 24 H 1.09000 * 109.47339 * 175.00351 * 23 3 2 25 25 C 1.53002 * 109.46649 * 294.99959 * 23 3 2 26 26 O 1.42900 * 109.47229 * 54.99861 * 23 3 2 27 27 H 1.08997 * 109.46668 * 299.99485 * 1 2 3 28 28 H 1.08996 * 109.47169 * 59.99482 * 1 2 3 29 29 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46943 * 240.00632 * 2 1 3 31 31 H 1.08996 * 109.47169 * 120.00518 * 2 1 3 32 32 H 0.97008 * 119.99488 * 264.99404 * 5 3 2 33 33 H 1.09005 * 109.46952 * 299.99214 * 8 6 5 34 34 H 1.08994 * 109.47812 * 59.99575 * 8 6 5 35 35 H 1.08007 * 119.87042 * 0.02562 * 10 9 8 36 36 H 1.08003 * 119.75157 * 180.02562 * 11 10 9 37 37 H 1.08003 * 119.87277 * 180.02562 * 12 11 10 38 38 H 1.07994 * 120.13083 * 179.97438 * 13 12 11 39 39 H 0.96997 * 120.00005 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47428 * 60.00304 * 25 23 3 41 41 H 1.09001 * 109.47655 * 299.99782 * 25 23 3 42 42 H 1.08999 * 109.46935 * 179.97438 * 25 23 3 43 43 H 0.96695 * 113.99709 * 300.00338 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6523 2.0975 -1.2518 6 6 0.4351 2.6645 -1.3668 7 8 -0.3396 2.6321 -0.4342 8 6 0.0362 3.3377 -2.6547 9 6 -1.3617 3.8853 -2.5232 10 6 -2.4372 3.1461 -2.9604 11 6 -3.7240 3.6470 -2.8403 12 6 -3.9435 4.8962 -2.2799 13 6 -2.8833 5.6531 -1.8371 14 6 -1.5729 5.1517 -1.9477 15 6 -0.4762 5.9175 -1.4892 16 1 0.4348 5.4257 -1.1818 17 6 -0.5713 7.3126 -1.4338 18 7 -1.5216 7.9299 -2.0875 19 14 0.6586 8.2934 -0.4265 20 1 1.6269 7.3660 0.2120 21 1 1.3871 9.2347 -1.3144 22 1 -0.0602 9.0591 0.6235 23 6 3.5648 1.4444 0.1256 24 1 3.9355 2.4655 0.0366 25 6 3.9650 0.8735 1.4876 26 8 4.1293 0.6404 -0.9123 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.2719 2.1233 -1.9978 33 1 0.7275 4.1531 -2.8677 34 1 0.0671 2.6132 -3.4683 35 1 -2.2779 2.1716 -3.3981 36 1 -4.5622 3.0599 -3.1857 37 1 -4.9504 5.2765 -2.1908 38 1 -3.0563 6.6260 -1.4013 39 1 -1.5873 8.8969 -2.0494 40 1 3.5943 -0.1476 1.5767 41 1 3.5345 1.4867 2.2793 42 1 5.0513 0.8744 1.5769 43 1 3.8426 -0.2829 -0.8945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836862129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:50 Heat of formation + Delta-G solvation = -86.881339 kcal Electronic energy + Delta-G solvation = -23905.340034 eV Core-core repulsion = 20528.416616 eV Total energy + Delta-G solvation = -3376.923418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.82966 -38.15014 -37.10279 -34.48711 -33.57924 -32.36237 -31.30995 -30.85461 -29.40859 -27.22772 -25.72173 -24.77759 -23.08265 -20.92096 -20.76663 -20.14913 -19.21828 -17.26355 -17.03248 -16.28413 -15.75891 -15.61829 -15.27775 -14.92442 -14.45617 -14.18769 -13.84073 -13.51904 -13.16728 -12.81813 -12.75208 -12.54948 -12.36179 -12.08907 -11.95569 -11.68815 -11.53528 -11.34650 -11.13530 -10.99630 -10.94557 -10.79041 -10.65022 -10.62066 -10.35165 -10.19591 -9.44053 -9.32592 -9.13367 -9.04399 -8.57243 -7.26681 -7.24511 -6.69743 -4.29984 2.81160 3.01290 3.09425 3.14497 3.29813 3.40940 3.65509 3.96630 4.23679 4.58990 4.70015 4.76317 4.97622 5.12103 5.21187 5.37795 5.54430 5.59450 5.69555 5.76591 5.84287 5.92167 6.04847 6.07540 6.11613 6.19567 6.30937 6.33242 6.48983 6.55150 6.64508 6.84633 6.90360 7.12999 7.34020 7.41902 7.46744 7.68876 7.95094 8.04281 8.13398 8.17526 8.36085 8.69514 8.95212 8.96659 9.06148 10.24449 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.005509 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.226285 B = 5081.179923 C = 6538.755772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.114 3.886 4 H 0.093 0.907 5 N -0.736 5.736 6 C 0.515 3.485 7 O -0.516 6.516 8 C -0.072 4.072 9 C -0.178 4.178 10 C -0.081 4.081 11 C -0.239 4.239 12 C -0.108 4.108 13 C -0.159 4.159 14 C 0.129 3.871 15 C -0.455 4.455 16 H 0.074 0.926 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.902 3.098 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.272 1.272 23 C 0.094 3.906 24 H 0.105 0.895 25 C -0.184 4.184 26 O -0.561 6.561 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.399 0.601 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.278 0.722 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.566 -11.170 2.899 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.008 3.992 4 H 0.111 0.889 5 N -0.391 5.391 6 C 0.303 3.697 7 O -0.390 6.390 8 C -0.112 4.112 9 C -0.180 4.180 10 C -0.100 4.100 11 C -0.259 4.259 12 C -0.126 4.126 13 C -0.178 4.178 14 C 0.126 3.874 15 C -0.485 4.485 16 H 0.092 0.908 17 C -0.141 4.141 18 N -0.422 5.422 19 Si 0.727 3.273 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.198 1.198 23 C 0.035 3.965 24 H 0.123 0.877 25 C -0.242 4.242 26 O -0.367 6.367 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.177 -10.370 3.379 14.254 hybrid contribution 0.469 0.055 0.303 0.561 sum 9.647 -10.314 3.682 14.595 Atomic orbital electron populations 1.21770 0.94216 1.00172 1.03905 1.21999 0.98016 0.96267 1.01327 1.21600 0.94247 0.93785 0.89567 0.88894 1.46111 1.17649 1.59420 1.15896 1.21157 0.80499 0.77191 0.90875 1.90678 1.50847 1.57070 1.40432 1.20269 0.97996 0.99452 0.93448 1.19057 0.91295 0.98329 1.09320 1.20284 0.92944 0.96849 0.99899 1.20297 0.95312 0.98076 1.12192 1.20668 0.97167 0.94827 0.99974 1.21289 0.91891 1.00324 1.04346 1.17336 0.92719 0.89966 0.87334 1.19495 1.00213 0.90608 1.38175 0.90773 1.25876 0.95931 0.98605 0.93660 1.69828 1.29931 1.10452 1.31966 0.86363 0.80969 0.79678 0.80313 1.18566 1.20059 1.19767 1.22228 0.91334 0.95868 0.87067 0.87716 1.22501 1.02347 1.01942 0.97407 1.86576 1.72281 1.24872 1.53011 0.92104 0.91768 0.94048 0.92055 0.91508 0.76717 0.88704 0.90796 0.89877 0.89753 0.89659 0.86579 0.91078 0.91835 0.91179 0.91588 0.77923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.51 37.16 0.32 -1.73 16 2 C -0.14 -1.52 4.89 -26.73 -0.13 -1.65 16 3 C 0.11 1.42 2.13 -67.93 -0.14 1.28 16 4 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 5 N -0.74 -10.63 5.01 -53.81 -0.27 -10.90 16 6 C 0.51 9.77 6.01 -10.99 -0.07 9.70 16 7 O -0.52 -11.74 13.17 5.56 0.07 -11.66 16 8 C -0.07 -1.41 5.18 -29.03 -0.15 -1.57 16 9 C -0.18 -4.30 4.43 -103.91 -0.46 -4.76 16 10 C -0.08 -1.89 9.66 -39.66 -0.38 -2.28 16 11 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 12 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 13 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16 14 C 0.13 3.46 5.56 -106.82 -0.59 2.87 16 15 C -0.46 -12.04 8.14 -37.74 -0.31 -12.35 16 16 H 0.07 1.92 6.67 -52.49 -0.35 1.57 16 17 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 18 N -0.80 -20.74 10.96 55.55 0.61 -20.13 16 19 Si 0.90 19.05 29.59 -169.99 -5.03 14.02 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C 0.09 0.96 3.49 -26.73 -0.09 0.86 16 24 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 25 C -0.18 -1.51 9.30 37.16 0.35 -1.16 16 26 O -0.56 -5.54 12.98 -35.23 -0.46 -6.00 16 27 H 0.06 0.97 7.85 -51.93 -0.41 0.57 16 28 H 0.06 1.09 5.64 -51.93 -0.29 0.80 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.60 7.00 -51.93 -0.36 0.23 16 31 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 32 H 0.40 4.99 8.38 -40.82 -0.34 4.64 16 33 H 0.09 1.86 7.08 -51.93 -0.37 1.49 16 34 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 35 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 38 H 0.12 3.22 6.20 -52.49 -0.33 2.90 16 39 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 40 H 0.06 0.45 6.46 -51.93 -0.34 0.12 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.37 2.63 7.31 45.56 0.33 2.96 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -30.56 343.86 -8.47 -39.03 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -5.69 Total: 13.11 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -2.89 Total: -22.66 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.34 Total: -31.03 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.38 Total: -17.66 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.56 -8.47 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836862129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.850 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds