Wall clock time and date at job start Tue Mar 31 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 H 1.09004 * 109.46867 * 54.99964 * 3 2 1 5 5 N 1.46502 * 109.47062 * 295.00641 * 3 2 1 6 6 C 1.34771 * 120.00255 * 85.00275 * 5 3 2 7 7 O 1.21278 * 120.00254 * 359.97438 * 6 5 3 8 8 C 1.50698 * 119.99769 * 180.02562 * 6 5 3 9 9 C 1.50702 * 109.46890 * 179.97438 * 8 6 5 10 10 C 1.37637 * 120.12998 * 264.99649 * 9 8 6 11 11 C 1.38610 * 120.25258 * 179.97438 * 10 9 8 12 12 C 1.38660 * 120.50023 * 0.02562 * 11 10 9 13 13 C 1.37590 * 120.24782 * 0.03254 * 12 11 10 14 14 C 1.40701 * 120.12920 * 84.72468 * 9 8 6 15 15 C 1.41393 * 120.24258 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00196 * 333.90322 * 15 14 9 17 17 C 1.39951 * 120.00056 * 153.89988 * 15 14 9 18 18 N 1.30820 * 120.00005 * 343.71228 * 17 15 14 19 19 Si 1.86797 * 120.00078 * 163.70544 * 17 15 14 20 20 H 1.48504 * 109.46852 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47075 * 119.99963 * 19 17 15 22 22 H 1.48499 * 109.47161 * 240.00264 * 19 17 15 23 23 C 1.52998 * 109.47200 * 175.00472 * 3 2 1 24 24 H 1.09000 * 109.47339 * 175.00351 * 23 3 2 25 25 C 1.53002 * 109.46649 * 294.99959 * 23 3 2 26 26 O 1.42900 * 109.47229 * 54.99861 * 23 3 2 27 27 H 1.08997 * 109.46668 * 299.99485 * 1 2 3 28 28 H 1.08996 * 109.47169 * 59.99482 * 1 2 3 29 29 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46943 * 240.00632 * 2 1 3 31 31 H 1.08996 * 109.47169 * 120.00518 * 2 1 3 32 32 H 0.97008 * 119.99488 * 264.99404 * 5 3 2 33 33 H 1.09005 * 109.46952 * 299.99214 * 8 6 5 34 34 H 1.08994 * 109.47812 * 59.99575 * 8 6 5 35 35 H 1.08007 * 119.87042 * 0.02562 * 10 9 8 36 36 H 1.08003 * 119.75157 * 180.02562 * 11 10 9 37 37 H 1.08003 * 119.87277 * 180.02562 * 12 11 10 38 38 H 1.07994 * 120.13083 * 179.97438 * 13 12 11 39 39 H 0.96997 * 120.00005 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47428 * 60.00304 * 25 23 3 41 41 H 1.09001 * 109.47655 * 299.99782 * 25 23 3 42 42 H 1.08999 * 109.46935 * 179.97438 * 25 23 3 43 43 H 0.96695 * 113.99709 * 300.00338 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6523 2.0975 -1.2518 6 6 0.4351 2.6645 -1.3668 7 8 -0.3396 2.6321 -0.4342 8 6 0.0362 3.3377 -2.6547 9 6 -1.3617 3.8853 -2.5232 10 6 -2.4372 3.1461 -2.9604 11 6 -3.7240 3.6470 -2.8403 12 6 -3.9435 4.8962 -2.2799 13 6 -2.8833 5.6531 -1.8371 14 6 -1.5729 5.1517 -1.9477 15 6 -0.4762 5.9175 -1.4892 16 1 0.4348 5.4257 -1.1818 17 6 -0.5713 7.3126 -1.4338 18 7 -1.5216 7.9299 -2.0875 19 14 0.6586 8.2934 -0.4265 20 1 1.6269 7.3660 0.2120 21 1 1.3871 9.2347 -1.3144 22 1 -0.0602 9.0591 0.6235 23 6 3.5648 1.4444 0.1256 24 1 3.9355 2.4655 0.0366 25 6 3.9650 0.8735 1.4876 26 8 4.1293 0.6404 -0.9123 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.2719 2.1233 -1.9978 33 1 0.7275 4.1531 -2.8677 34 1 0.0671 2.6132 -3.4683 35 1 -2.2779 2.1716 -3.3981 36 1 -4.5622 3.0599 -3.1857 37 1 -4.9504 5.2765 -2.1908 38 1 -3.0563 6.6260 -1.4013 39 1 -1.5873 8.8969 -2.0494 40 1 3.5943 -0.1476 1.5767 41 1 3.5345 1.4867 2.2793 42 1 5.0513 0.8744 1.5769 43 1 3.8426 -0.2829 -0.8945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836862129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:50 Heat of formation + Delta-G solvation = -107.325210 kcal Electronic energy + Delta-G solvation = -23906.226546 eV Core-core repulsion = 20528.416616 eV Total energy + Delta-G solvation = -3377.809931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12801 -39.55780 -38.60814 -35.58793 -35.49013 -33.78280 -32.84744 -31.66167 -31.33087 -28.78012 -27.19683 -26.40313 -23.99266 -22.81985 -22.24455 -21.29657 -20.83132 -19.06765 -18.17934 -17.64124 -17.24301 -16.75924 -16.59593 -16.22144 -16.08266 -15.49237 -15.33644 -14.96182 -14.68500 -14.39856 -14.18640 -13.67975 -13.50996 -13.37593 -13.19741 -12.96281 -12.94673 -12.90456 -12.74432 -12.54742 -12.49704 -12.29662 -12.11349 -11.72153 -11.60490 -11.31457 -11.21696 -11.07368 -11.02965 -10.57782 -9.82832 -9.21736 -9.14734 -8.59206 -6.28573 0.99548 1.14242 1.34772 1.48024 1.51588 1.93332 2.19395 2.40877 2.78999 3.47357 3.67936 3.78151 3.88435 4.17165 4.17826 4.24401 4.33820 4.41229 4.51554 4.57183 4.62717 4.71105 4.77079 4.81025 4.82799 4.90974 5.02215 5.07538 5.14994 5.20650 5.25163 5.31585 5.37673 5.48938 5.55725 5.71346 5.78522 6.04918 6.17904 6.22203 6.43105 6.71858 6.78559 6.81898 7.00338 7.12347 7.55339 8.37404 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.005509 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.226285 B = 5081.179923 C = 6538.755772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.111 3.889 4 H 0.064 0.936 5 N -0.719 5.719 6 C 0.518 3.482 7 O -0.561 6.561 8 C -0.072 4.072 9 C -0.183 4.183 10 C -0.091 4.091 11 C -0.242 4.242 12 C -0.118 4.118 13 C -0.193 4.193 14 C 0.096 3.904 15 C -0.480 4.480 16 H 0.070 0.930 17 C 0.035 3.965 18 N -0.827 5.827 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.269 1.269 23 C 0.106 3.894 24 H 0.094 0.906 25 C -0.180 4.180 26 O -0.567 6.567 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.411 0.589 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.517 -13.113 2.741 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.006 3.994 4 H 0.083 0.917 5 N -0.373 5.373 6 C 0.306 3.694 7 O -0.439 6.439 8 C -0.112 4.112 9 C -0.185 4.185 10 C -0.109 4.109 11 C -0.261 4.261 12 C -0.137 4.137 13 C -0.213 4.213 14 C 0.094 3.906 15 C -0.510 4.510 16 H 0.088 0.912 17 C -0.179 4.179 18 N -0.454 5.454 19 Si 0.792 3.208 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.194 1.194 23 C 0.046 3.954 24 H 0.112 0.888 25 C -0.237 4.237 26 O -0.375 6.375 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 11.163 -12.345 3.196 16.948 hybrid contribution -0.188 0.545 0.294 0.647 sum 10.975 -11.799 3.490 16.488 Atomic orbital electron populations 1.21705 0.96672 1.00364 1.01095 1.21962 0.95564 0.95404 1.03769 1.21773 0.96064 0.94220 0.87377 0.91746 1.45919 1.16183 1.58059 1.17096 1.20917 0.81426 0.77168 0.89902 1.90668 1.52508 1.59086 1.41627 1.20280 0.95544 1.00181 0.95171 1.19530 0.93902 0.97460 1.07609 1.20702 0.92681 0.98011 0.99525 1.20704 0.96635 0.97679 1.11078 1.20938 0.97572 0.95375 0.99778 1.21292 0.93113 1.00381 1.06482 1.17724 0.92880 0.91570 0.88420 1.19622 1.00218 0.91548 1.39643 0.91190 1.26664 0.97804 0.99218 0.94213 1.69887 1.31490 1.11077 1.32932 0.85330 0.78543 0.78144 0.78750 1.18619 1.18549 1.19418 1.22040 0.89029 0.95887 0.88413 0.88821 1.22467 1.02933 1.02593 0.95753 1.86565 1.72122 1.25981 1.52838 0.94814 0.94733 0.92227 0.89786 0.88735 0.75287 0.89000 0.87512 0.86783 0.86785 0.87768 0.88607 0.90422 0.90218 0.91585 0.90699 0.76246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.51 71.98 0.61 -3.29 16 2 C -0.13 -2.51 4.89 30.60 0.15 -2.37 16 3 C 0.11 2.62 2.13 44.99 0.10 2.72 16 4 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 5 N -0.72 -19.96 5.01 -442.54 -2.22 -22.18 16 6 C 0.52 19.63 6.01 87.66 0.53 20.16 16 7 O -0.56 -26.19 13.17 -3.02 -0.04 -26.23 16 8 C -0.07 -2.81 5.18 29.10 0.15 -2.66 16 9 C -0.18 -8.92 4.43 -19.40 -0.09 -9.01 16 10 C -0.09 -4.16 9.66 22.22 0.21 -3.94 16 11 C -0.24 -11.18 10.05 22.46 0.23 -10.96 16 12 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 13 C -0.19 -10.86 8.69 22.73 0.20 -10.66 16 14 C 0.10 5.35 5.56 -21.29 -0.12 5.23 16 15 C -0.48 -26.33 8.14 23.46 0.19 -26.13 16 16 H 0.07 3.75 6.67 -2.91 -0.02 3.73 16 17 C 0.04 1.83 5.16 85.26 0.44 2.27 16 18 N -0.83 -44.56 10.96 21.83 0.24 -44.32 16 19 Si 0.97 39.79 29.59 68.60 2.03 41.82 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 C 0.11 1.91 3.49 30.59 0.11 2.01 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 25 C -0.18 -2.45 9.30 71.98 0.67 -1.78 16 26 O -0.57 -9.30 12.98 -148.98 -1.93 -11.23 16 27 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 28 H 0.03 1.15 5.64 -2.39 -0.01 1.14 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.30 7.00 -2.38 -0.02 1.28 16 31 H 0.09 1.37 6.34 -2.39 -0.02 1.35 16 32 H 0.41 9.46 8.38 -92.70 -0.78 8.69 16 33 H 0.09 3.62 7.08 -2.38 -0.02 3.60 16 34 H 0.11 3.36 8.05 -2.39 -0.02 3.34 16 35 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.10 5.64 6.20 -2.91 -0.02 5.62 16 39 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 40 H 0.08 0.83 6.46 -2.39 -0.02 0.81 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.39 3.84 7.31 -74.06 -0.54 3.29 16 Total: -1.00 -69.35 343.86 1.39 -67.96 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.29 Total: 38.30 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 3.60 Total: -44.11 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -1.98 Total: -66.50 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.97 Total: -37.46 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -69.35 1.39 -67.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836862129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.366 kcal (2) G-P(sol) polarization free energy of solvation -69.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds