Wall clock time and date at job start Tue Mar 31 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46988 * 2 1 4 4 H 1.09001 * 109.47336 * 304.99865 * 3 2 1 5 5 N 1.46503 * 109.47453 * 64.99944 * 3 2 1 6 6 C 1.34774 * 119.99848 * 275.00364 * 5 3 2 7 7 O 1.21283 * 120.00086 * 359.97438 * 6 5 3 8 8 C 1.50699 * 119.99995 * 179.97438 * 6 5 3 9 9 C 1.50699 * 109.47261 * 179.97438 * 8 6 5 10 10 C 1.37634 * 120.13393 * 265.00003 * 9 8 6 11 11 C 1.38610 * 120.25291 * 180.29466 * 10 9 8 12 12 C 1.38656 * 120.49686 * 359.45121 * 11 10 9 13 13 C 1.37599 * 120.25237 * 0.54998 * 12 11 10 14 14 C 1.40699 * 120.12515 * 85.02342 * 9 8 6 15 15 C 1.41398 * 120.24369 * 359.95781 * 14 9 8 16 16 H 1.08006 * 119.99753 * 334.25880 * 15 14 9 17 17 C 1.39940 * 120.00251 * 154.26265 * 15 14 9 18 18 N 1.30822 * 119.99912 * 343.39100 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 163.40203 * 17 15 14 20 20 H 1.48494 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47407 * 119.99663 * 19 17 15 22 22 H 1.48508 * 109.46756 * 239.99409 * 19 17 15 23 23 C 1.53004 * 109.46970 * 184.99958 * 3 2 1 24 24 H 1.09000 * 109.46951 * 184.99788 * 23 3 2 25 25 C 1.53000 * 109.46932 * 64.99935 * 23 3 2 26 26 O 1.42904 * 109.47009 * 304.99858 * 23 3 2 27 27 H 1.09003 * 109.46477 * 60.00152 * 1 2 3 28 28 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47033 * 299.99831 * 1 2 3 30 30 H 1.09002 * 109.47188 * 239.99757 * 2 1 3 31 31 H 1.08995 * 109.46597 * 120.00120 * 2 1 3 32 32 H 0.97001 * 119.99779 * 94.99765 * 5 3 2 33 33 H 1.09010 * 109.46726 * 60.00014 * 8 6 5 34 34 H 1.08997 * 109.47060 * 299.99951 * 8 6 5 35 35 H 1.08003 * 119.87237 * 0.02651 * 10 9 8 36 36 H 1.07994 * 119.75409 * 179.70166 * 11 10 9 37 37 H 1.08005 * 119.87612 * 180.30151 * 12 11 10 38 38 H 1.07999 * 120.13116 * 179.75100 * 13 12 11 39 39 H 0.97001 * 120.00439 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47217 * 60.00440 * 25 23 3 41 41 H 1.09006 * 109.46777 * 180.02562 * 25 23 3 42 42 H 1.09000 * 109.47182 * 299.99711 * 25 23 3 43 43 H 0.96699 * 113.99865 * 60.00162 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3393 2.6326 0.4341 8 6 0.0363 3.3377 2.6547 9 6 -1.3612 3.8862 2.5230 10 6 -1.5567 5.1993 2.1599 11 6 -2.8408 5.7080 2.0439 12 6 -3.9420 4.8994 2.2805 13 6 -3.7705 3.5836 2.6447 14 6 -2.4712 3.0580 2.7712 15 6 -2.2826 1.7073 3.1444 16 1 -1.3819 1.1873 2.8533 17 6 -3.2631 1.0442 3.8909 18 7 -4.1840 1.7306 4.5172 19 14 -3.2569 -0.8210 3.9934 20 1 -2.1201 -1.3564 3.2020 21 1 -3.1135 -1.2384 5.4112 22 1 -4.5324 -1.3510 3.4480 23 6 3.5649 1.4443 -0.1257 24 1 3.9356 2.4655 -0.0366 25 6 3.9650 0.8735 -1.4877 26 8 4.1294 0.6404 0.9122 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2720 2.1232 1.9978 33 1 0.7277 4.1531 2.8677 34 1 0.0673 2.6131 3.4684 35 1 -0.7061 5.8369 1.9688 36 1 -2.9848 6.7408 1.7631 37 1 -4.9383 5.3049 2.1825 38 1 -4.6296 2.9567 2.8325 39 1 -4.8639 1.2710 5.0344 40 1 3.5345 1.4867 -2.2793 41 1 5.0514 0.8744 -1.5771 42 1 3.5943 -0.1477 -1.5768 43 1 3.8427 -0.2830 0.8944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836862130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:54 Heat of formation + Delta-G solvation = -87.079393 kcal Electronic energy + Delta-G solvation = -24060.216079 eV Core-core repulsion = 20683.284072 eV Total energy + Delta-G solvation = -3376.932006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.82079 -38.14403 -37.09895 -34.45993 -33.58231 -32.32300 -31.30684 -30.82227 -29.40651 -27.20088 -25.74343 -24.73732 -23.01572 -20.93228 -20.75127 -20.12826 -19.21267 -17.25954 -17.02302 -16.27770 -15.74469 -15.57792 -15.37710 -14.77709 -14.47277 -14.16304 -13.84603 -13.52375 -13.16781 -12.75262 -12.71276 -12.55345 -12.35785 -12.05173 -11.87498 -11.69773 -11.54219 -11.27456 -11.11098 -10.97594 -10.93997 -10.75963 -10.65370 -10.51352 -10.33564 -10.18014 -9.44033 -9.31624 -9.13097 -9.04442 -8.56034 -7.26854 -7.24722 -6.70343 -4.30034 2.80891 3.01218 3.09065 3.13928 3.29669 3.40748 3.65692 3.96086 4.23836 4.60532 4.69653 4.77626 4.96271 5.17555 5.27012 5.39281 5.55497 5.64021 5.73519 5.78592 5.83681 5.94608 6.07931 6.12843 6.21827 6.25930 6.33207 6.44549 6.49219 6.55303 6.82832 6.86755 6.92099 7.14125 7.34107 7.42510 7.46633 7.68786 7.95127 8.04317 8.13325 8.17594 8.35914 8.69394 8.95091 8.96404 9.05992 10.23974 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.005643 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.460570 B = 4961.111433 C = 6277.641919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.115 3.885 4 H 0.091 0.909 5 N -0.736 5.736 6 C 0.515 3.485 7 O -0.517 6.517 8 C -0.072 4.072 9 C -0.179 4.179 10 C -0.082 4.082 11 C -0.240 4.240 12 C -0.108 4.108 13 C -0.160 4.160 14 C 0.129 3.871 15 C -0.454 4.454 16 H 0.075 0.925 17 C 0.077 3.923 18 N -0.795 5.795 19 Si 0.899 3.101 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.273 1.273 23 C 0.095 3.905 24 H 0.103 0.897 25 C -0.184 4.184 26 O -0.562 6.562 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.278 0.722 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.691 -3.830 -5.718 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.009 3.991 4 H 0.109 0.891 5 N -0.391 5.391 6 C 0.302 3.698 7 O -0.391 6.391 8 C -0.112 4.112 9 C -0.180 4.180 10 C -0.100 4.100 11 C -0.259 4.259 12 C -0.126 4.126 13 C -0.179 4.179 14 C 0.127 3.873 15 C -0.484 4.484 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.421 5.421 19 Si 0.724 3.276 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.198 1.198 23 C 0.036 3.964 24 H 0.121 0.879 25 C -0.242 4.242 26 O -0.368 6.368 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 12.182 -3.314 -6.088 14.016 hybrid contribution -0.144 -1.360 0.242 1.389 sum 12.038 -4.673 -5.846 14.175 Atomic orbital electron populations 1.21817 0.93769 1.00549 1.04302 1.22011 0.98377 0.96043 1.01252 1.21598 0.94107 0.94039 0.89361 0.89054 1.46115 1.17641 1.59408 1.15923 1.21166 0.80298 0.77577 0.90730 1.90681 1.50333 1.57508 1.40529 1.20273 0.96364 0.99709 0.94832 1.19052 0.92117 0.93633 1.13241 1.20292 0.95393 0.94650 0.99659 1.20293 0.92983 0.98254 1.14374 1.20669 0.96291 0.95020 1.00634 1.21284 0.97763 0.94513 1.04336 1.17329 0.90383 0.92185 0.87406 1.19486 1.03643 0.95956 1.29303 0.90731 1.25864 0.94348 1.00315 0.93465 1.69830 1.12564 1.37543 1.22181 0.86399 0.79440 0.83173 0.78578 1.18434 1.20074 1.19773 1.22211 0.91363 0.95721 0.87111 0.87930 1.22503 1.02277 1.02087 0.97352 1.86559 1.72252 1.25062 1.52962 0.92341 0.94037 0.90825 0.91669 0.92013 0.76721 0.90776 0.88707 0.89850 0.89755 0.89674 0.86612 0.91082 0.91265 0.91621 0.91744 0.77697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.52 37.16 0.32 -2.12 16 2 C -0.14 -1.70 4.89 -26.73 -0.13 -1.83 16 3 C 0.11 1.44 2.13 -67.93 -0.14 1.29 16 4 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 5 N -0.74 -10.61 5.01 -53.80 -0.27 -10.88 16 6 C 0.51 9.73 6.03 -10.99 -0.07 9.67 16 7 O -0.52 -11.72 13.17 5.55 0.07 -11.65 16 8 C -0.07 -1.41 5.18 -29.04 -0.15 -1.56 16 9 C -0.18 -4.30 4.43 -103.91 -0.46 -4.76 16 10 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 11 C -0.24 -5.64 10.05 -39.29 -0.39 -6.04 16 12 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 13 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16 14 C 0.13 3.45 5.56 -106.82 -0.59 2.85 16 15 C -0.45 -11.86 8.15 -37.74 -0.31 -12.16 16 16 H 0.07 1.89 6.34 -52.48 -0.33 1.56 16 17 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 18 N -0.80 -20.62 10.97 55.55 0.61 -20.01 16 19 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 C 0.10 0.93 3.49 -26.73 -0.09 0.84 16 24 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 25 C -0.18 -1.45 9.30 37.16 0.35 -1.11 16 26 O -0.56 -5.62 12.98 -35.23 -0.46 -6.07 16 27 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.49 5.31 -51.93 -0.28 1.21 16 30 H 0.06 0.66 6.34 -51.93 -0.33 0.33 16 31 H 0.06 0.71 7.00 -51.93 -0.36 0.34 16 32 H 0.40 4.97 8.38 -40.82 -0.34 4.63 16 33 H 0.07 1.24 8.05 -51.92 -0.42 0.82 16 34 H 0.09 1.85 7.06 -51.93 -0.37 1.49 16 35 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.12 3.20 6.21 -52.49 -0.33 2.87 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.47 6.46 -51.93 -0.34 0.13 16 43 H 0.37 2.86 7.31 45.56 0.33 3.20 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -30.32 343.23 -8.44 -38.77 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -5.65 Total: 13.84 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -2.89 Total: -23.05 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.34 Total: -30.89 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.38 Total: -17.72 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.32 -8.44 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836862130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.314 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds