Wall clock time and date at job start Tue Mar 31 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46988 * 2 1 4 4 H 1.09001 * 109.47336 * 304.99865 * 3 2 1 5 5 N 1.46503 * 109.47453 * 64.99944 * 3 2 1 6 6 C 1.34774 * 119.99848 * 275.00364 * 5 3 2 7 7 O 1.21283 * 120.00086 * 359.97438 * 6 5 3 8 8 C 1.50699 * 119.99995 * 179.97438 * 6 5 3 9 9 C 1.50699 * 109.47261 * 179.97438 * 8 6 5 10 10 C 1.37634 * 120.13393 * 265.00003 * 9 8 6 11 11 C 1.38610 * 120.25291 * 180.29466 * 10 9 8 12 12 C 1.38656 * 120.49686 * 359.45121 * 11 10 9 13 13 C 1.37599 * 120.25237 * 0.54998 * 12 11 10 14 14 C 1.40699 * 120.12515 * 85.02342 * 9 8 6 15 15 C 1.41398 * 120.24369 * 359.95781 * 14 9 8 16 16 H 1.08006 * 119.99753 * 334.25880 * 15 14 9 17 17 C 1.39940 * 120.00251 * 154.26265 * 15 14 9 18 18 N 1.30822 * 119.99912 * 343.39100 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 163.40203 * 17 15 14 20 20 H 1.48494 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47407 * 119.99663 * 19 17 15 22 22 H 1.48508 * 109.46756 * 239.99409 * 19 17 15 23 23 C 1.53004 * 109.46970 * 184.99958 * 3 2 1 24 24 H 1.09000 * 109.46951 * 184.99788 * 23 3 2 25 25 C 1.53000 * 109.46932 * 64.99935 * 23 3 2 26 26 O 1.42904 * 109.47009 * 304.99858 * 23 3 2 27 27 H 1.09003 * 109.46477 * 60.00152 * 1 2 3 28 28 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47033 * 299.99831 * 1 2 3 30 30 H 1.09002 * 109.47188 * 239.99757 * 2 1 3 31 31 H 1.08995 * 109.46597 * 120.00120 * 2 1 3 32 32 H 0.97001 * 119.99779 * 94.99765 * 5 3 2 33 33 H 1.09010 * 109.46726 * 60.00014 * 8 6 5 34 34 H 1.08997 * 109.47060 * 299.99951 * 8 6 5 35 35 H 1.08003 * 119.87237 * 0.02651 * 10 9 8 36 36 H 1.07994 * 119.75409 * 179.70166 * 11 10 9 37 37 H 1.08005 * 119.87612 * 180.30151 * 12 11 10 38 38 H 1.07999 * 120.13116 * 179.75100 * 13 12 11 39 39 H 0.97001 * 120.00439 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47217 * 60.00440 * 25 23 3 41 41 H 1.09006 * 109.46777 * 180.02562 * 25 23 3 42 42 H 1.09000 * 109.47182 * 299.99711 * 25 23 3 43 43 H 0.96699 * 113.99865 * 60.00162 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3393 2.6326 0.4341 8 6 0.0363 3.3377 2.6547 9 6 -1.3612 3.8862 2.5230 10 6 -1.5567 5.1993 2.1599 11 6 -2.8408 5.7080 2.0439 12 6 -3.9420 4.8994 2.2805 13 6 -3.7705 3.5836 2.6447 14 6 -2.4712 3.0580 2.7712 15 6 -2.2826 1.7073 3.1444 16 1 -1.3819 1.1873 2.8533 17 6 -3.2631 1.0442 3.8909 18 7 -4.1840 1.7306 4.5172 19 14 -3.2569 -0.8210 3.9934 20 1 -2.1201 -1.3564 3.2020 21 1 -3.1135 -1.2384 5.4112 22 1 -4.5324 -1.3510 3.4480 23 6 3.5649 1.4443 -0.1257 24 1 3.9356 2.4655 -0.0366 25 6 3.9650 0.8735 -1.4877 26 8 4.1294 0.6404 0.9122 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2720 2.1232 1.9978 33 1 0.7277 4.1531 2.8677 34 1 0.0673 2.6131 3.4684 35 1 -0.7061 5.8369 1.9688 36 1 -2.9848 6.7408 1.7631 37 1 -4.9383 5.3049 2.1825 38 1 -4.6296 2.9567 2.8325 39 1 -4.8639 1.2710 5.0344 40 1 3.5345 1.4867 -2.2793 41 1 5.0514 0.8744 -1.5771 42 1 3.5943 -0.1477 -1.5768 43 1 3.8427 -0.2830 0.8944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836862130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:53 Heat of formation + Delta-G solvation = -107.298694 kcal Electronic energy + Delta-G solvation = -24061.092853 eV Core-core repulsion = 20683.284072 eV Total energy + Delta-G solvation = -3377.808781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12329 -39.54254 -38.59543 -35.58859 -35.47359 -33.76930 -32.86493 -31.64621 -31.32038 -28.75806 -27.23720 -26.35035 -23.99061 -22.81689 -22.23826 -21.28843 -20.81957 -19.05745 -18.16120 -17.61970 -17.30086 -16.73087 -16.55605 -16.20518 -16.07318 -15.46042 -15.34741 -14.98011 -14.70765 -14.37960 -14.13763 -13.67021 -13.55003 -13.37306 -13.17547 -12.98902 -12.95138 -12.85271 -12.74104 -12.54650 -12.46345 -12.31054 -12.11370 -11.71548 -11.59318 -11.30853 -11.19226 -11.05733 -11.01877 -10.57291 -9.82386 -9.21231 -9.14188 -8.58786 -6.26923 0.99995 1.14691 1.34793 1.47906 1.51772 1.93725 2.19508 2.41853 2.79837 3.48318 3.69871 3.79523 3.89135 4.16928 4.18362 4.26271 4.33484 4.42529 4.51696 4.57131 4.63115 4.71894 4.77771 4.80025 4.83406 4.92815 5.00922 5.08608 5.15114 5.20788 5.25948 5.33505 5.37862 5.52564 5.56446 5.71962 5.79691 6.05843 6.19120 6.23036 6.43933 6.72950 6.78386 6.81260 7.01445 7.13331 7.55995 8.37984 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.005643 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.460570 B = 4961.111433 C = 6277.641919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.113 3.887 4 H 0.072 0.928 5 N -0.719 5.719 6 C 0.518 3.482 7 O -0.561 6.561 8 C -0.072 4.072 9 C -0.184 4.184 10 C -0.092 4.092 11 C -0.243 4.243 12 C -0.118 4.118 13 C -0.194 4.194 14 C 0.098 3.902 15 C -0.476 4.476 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.827 5.827 19 Si 0.967 3.033 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.271 1.271 23 C 0.108 3.892 24 H 0.103 0.897 25 C -0.180 4.180 26 O -0.570 6.570 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.285 0.715 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.289 -4.560 -6.116 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.008 3.992 4 H 0.090 0.910 5 N -0.372 5.372 6 C 0.306 3.694 7 O -0.439 6.439 8 C -0.112 4.112 9 C -0.186 4.186 10 C -0.110 4.110 11 C -0.262 4.262 12 C -0.137 4.137 13 C -0.214 4.214 14 C 0.096 3.904 15 C -0.506 4.506 16 H 0.090 0.910 17 C -0.178 4.178 18 N -0.454 5.454 19 Si 0.788 3.212 20 H -0.183 1.183 21 H -0.186 1.186 22 H -0.196 1.196 23 C 0.048 3.952 24 H 0.121 0.879 25 C -0.238 4.238 26 O -0.378 6.378 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.247 0.753 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 14.826 -4.049 -6.469 16.676 hybrid contribution -0.924 -1.047 0.340 1.437 sum 13.902 -5.097 -6.129 16.026 Atomic orbital electron populations 1.21743 0.97064 1.00001 1.01405 1.21984 0.95100 0.96322 1.03505 1.21769 0.96290 0.93639 0.87503 0.90959 1.45921 1.16207 1.57976 1.17140 1.20922 0.81156 0.77614 0.89736 1.90670 1.51920 1.59467 1.41829 1.20285 0.94787 1.00811 0.95319 1.19529 0.93661 0.93926 1.11480 1.20719 0.96503 0.94857 0.98962 1.20692 0.92781 0.99492 1.13242 1.20937 0.97900 0.94494 1.00346 1.21291 0.97589 0.95593 1.06879 1.17712 0.91186 0.93167 0.88376 1.19619 1.04340 0.96355 1.30246 0.90956 1.26643 0.93718 1.04703 0.92730 1.69892 1.13274 1.39408 1.22822 0.85388 0.79276 0.77438 0.79087 1.18287 1.18637 1.19572 1.22082 0.88650 0.96168 0.88260 0.87893 1.22473 1.02959 1.02475 0.95913 1.86552 1.72136 1.26000 1.53066 0.94278 0.93329 0.94703 0.88575 0.90496 0.75283 0.87504 0.88973 0.86739 0.86837 0.87847 0.88658 0.90479 0.91167 0.90611 0.90770 0.76374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 8.52 71.99 0.61 -4.18 16 2 C -0.13 -2.95 4.89 30.60 0.15 -2.80 16 3 C 0.11 2.63 2.13 44.99 0.10 2.73 16 4 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 5 N -0.72 -19.72 5.01 -442.53 -2.22 -21.93 16 6 C 0.52 19.48 6.03 87.66 0.53 20.00 16 7 O -0.56 -26.02 13.17 -3.04 -0.04 -26.06 16 8 C -0.07 -2.80 5.18 29.10 0.15 -2.65 16 9 C -0.18 -8.94 4.43 -19.41 -0.09 -9.02 16 10 C -0.09 -4.22 9.66 22.22 0.21 -4.00 16 11 C -0.24 -11.25 10.05 22.46 0.23 -11.02 16 12 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 13 C -0.19 -10.87 8.69 22.73 0.20 -10.68 16 14 C 0.10 5.40 5.56 -21.29 -0.12 5.28 16 15 C -0.48 -25.73 8.15 23.46 0.19 -25.54 16 16 H 0.07 3.81 6.34 -2.91 -0.02 3.79 16 17 C 0.04 1.87 5.16 85.26 0.44 2.31 16 18 N -0.83 -44.39 10.97 21.82 0.24 -44.15 16 19 Si 0.97 39.46 29.59 68.60 2.03 41.49 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 C 0.11 1.79 3.49 30.60 0.11 1.89 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 C -0.18 -2.25 9.30 71.98 0.67 -1.58 16 26 O -0.57 -9.42 12.98 -148.98 -1.93 -11.36 16 27 H 0.04 1.40 7.85 -2.39 -0.02 1.38 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.03 1.42 5.31 -2.39 -0.01 1.41 16 30 H 0.10 1.61 6.34 -2.39 -0.02 1.59 16 31 H 0.08 1.52 7.00 -2.39 -0.02 1.51 16 32 H 0.41 9.34 8.38 -92.71 -0.78 8.56 16 33 H 0.11 3.35 8.05 -2.38 -0.02 3.33 16 34 H 0.09 3.60 7.06 -2.39 -0.02 3.58 16 35 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 36 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.10 5.60 6.21 -2.91 -0.02 5.58 16 39 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.79 6.46 -2.39 -0.02 0.77 16 43 H 0.39 4.42 7.31 -74.06 -0.54 3.88 16 Total: -1.00 -68.72 343.23 1.39 -67.32 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.28 Total: 39.67 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 3.60 Total: -44.98 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -1.98 Total: -66.09 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.97 Total: -37.41 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -68.72 1.39 -67.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836862130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.975 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds