Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47101 * 2 1 4 4 H 1.08993 * 109.46831 * 185.24062 * 3 2 1 5 5 C 1.50704 * 109.46759 * 305.23757 * 3 2 1 6 6 H 1.08006 * 119.99491 * 120.00223 * 5 3 2 7 7 C 1.37866 * 120.00307 * 299.99587 * 5 3 2 8 8 N 1.31516 * 120.00315 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99985 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.47154 * 89.99846 * 9 7 5 11 11 H 1.48494 * 109.47290 * 209.99859 * 9 7 5 12 12 H 1.48499 * 109.47120 * 329.99955 * 9 7 5 13 13 N 1.46906 * 109.47024 * 65.23602 * 3 2 1 14 14 C 1.46899 * 110.99468 * 86.28323 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.94724 * 14 13 3 16 16 C 1.38256 * 120.00217 * 259.99977 * 15 14 13 17 17 C 1.38213 * 120.00237 * 180.02562 * 16 15 14 18 18 C 1.38263 * 119.99798 * 359.97438 * 17 16 15 19 19 C 1.38209 * 120.00065 * 359.97438 * 18 17 16 20 20 C 1.38216 * 120.00108 * 79.73039 * 15 14 13 21 21 C 1.50708 * 119.99817 * 359.97438 * 20 15 14 22 22 C 1.50699 * 109.47008 * 84.99743 * 21 20 15 23 23 O 1.20823 * 120.00113 * 0.02562 * 22 21 20 24 24 O 1.34234 * 119.99710 * 179.97438 * 22 21 20 25 25 C 1.45202 * 116.99744 * 180.02562 * 24 22 21 26 26 H 1.08997 * 109.46729 * 174.90676 * 1 2 3 27 27 H 1.08999 * 109.46957 * 54.90479 * 1 2 3 28 28 H 1.09001 * 109.46952 * 294.90806 * 1 2 3 29 29 H 1.09000 * 109.47265 * 119.99870 * 2 1 3 30 30 H 1.09001 * 109.47023 * 240.00117 * 2 1 3 31 31 H 0.97004 * 120.00056 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00076 * 322.33060 * 13 3 2 33 33 H 1.08995 * 109.47219 * 294.94555 * 14 13 3 34 34 H 1.08999 * 109.47280 * 54.95231 * 14 13 3 35 35 H 1.08004 * 119.99770 * 359.97438 * 16 15 14 36 36 H 1.08001 * 119.99840 * 179.97438 * 17 16 15 37 37 H 1.07998 * 119.99546 * 179.97438 * 18 17 16 38 38 H 1.08001 * 120.00234 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.46903 * 205.00042 * 21 20 15 40 40 H 1.09001 * 109.47072 * 324.99748 * 21 20 15 41 41 H 1.09003 * 109.46759 * 60.00435 * 25 24 22 42 42 H 1.09002 * 109.46986 * 180.02562 * 25 24 22 43 43 H 1.09001 * 109.47039 * 300.00182 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1260 1.4439 -0.0939 5 6 1.4346 2.1893 -1.1605 6 1 0.8256 3.0632 -0.9816 7 6 1.6580 1.7571 -2.4505 8 7 1.1300 2.4091 -3.4633 9 14 2.7108 0.2453 -2.7598 10 1 1.8495 -0.9645 -2.7682 11 1 3.3923 0.3768 -4.0726 12 1 3.7275 0.1216 -1.6845 13 7 1.6563 2.0976 1.2577 14 6 2.6508 1.8431 2.3084 15 6 2.2897 2.6290 3.5426 16 6 2.9347 3.8207 3.8168 17 6 2.6039 4.5411 4.9489 18 6 1.6274 4.0703 5.8071 19 6 0.9818 2.8795 5.5325 20 6 1.3096 2.1611 4.3976 21 6 0.6018 0.8654 4.0953 22 6 1.4138 -0.2868 4.6282 23 8 2.4597 -0.0774 5.1957 24 8 0.9746 -1.5457 4.4733 25 6 1.8080 -2.6056 5.0122 26 1 -0.3633 -1.0236 -0.0912 27 1 -0.3633 0.5908 -0.8408 28 1 -0.3633 0.4328 0.9321 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.2870 2.1048 -4.3709 32 1 0.7365 1.8050 1.5518 33 1 2.6644 0.7795 2.5460 34 1 3.6363 2.1498 1.9580 35 1 3.6978 4.1882 3.1466 36 1 3.1082 5.4718 5.1633 37 1 1.3692 4.6330 6.6920 38 1 0.2193 2.5114 6.2030 39 1 -0.3796 0.8684 4.5696 40 1 0.4839 0.7588 3.0170 41 1 1.9236 -2.4659 6.0871 42 1 1.3388 -3.5704 4.8192 43 1 2.7873 -2.5762 4.5345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846984603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -56.912534 kcal Electronic energy + Delta-G solvation = -24010.997344 eV Core-core repulsion = 20635.373471 eV Total energy + Delta-G solvation = -3375.623873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72454 -39.27575 -36.83047 -36.50793 -33.51508 -32.61749 -31.67098 -30.00901 -28.82885 -27.11516 -26.81356 -24.41240 -23.22582 -22.36705 -21.33604 -20.24740 -19.58982 -17.70805 -16.89997 -16.77056 -16.48119 -15.94211 -15.52180 -15.21260 -14.89986 -14.42065 -13.86533 -13.61589 -13.50127 -13.21813 -13.14084 -12.91515 -12.74639 -12.46731 -12.19722 -12.14171 -12.06815 -11.84561 -11.26664 -11.01573 -10.90658 -10.86971 -10.72075 -10.56553 -10.50594 -10.33765 -9.90209 -9.42644 -9.15614 -8.68867 -8.58102 -8.48859 -7.46038 -6.04541 -4.00462 1.37623 1.56415 2.15472 2.70720 3.25184 3.34903 3.37532 3.90778 4.40272 4.53323 4.79523 4.88866 4.95972 4.99806 5.03611 5.11713 5.16761 5.24335 5.30253 5.37342 5.39699 5.54012 5.67571 5.81897 5.90182 5.93461 5.97007 6.12547 6.18149 6.22006 6.30668 6.49815 6.55295 6.62603 6.74332 6.77162 6.83127 6.95542 7.13250 7.25484 7.68629 7.69723 7.86329 8.25256 8.68586 9.07408 9.58211 11.08736 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.005495 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.739367 B = 5094.458020 C = 6388.346394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.160 4.160 3 C 0.184 3.816 4 H 0.034 0.966 5 C -0.489 4.489 6 H 0.083 0.917 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.662 5.662 14 C 0.089 3.911 15 C -0.044 4.044 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.077 4.077 21 C -0.078 4.078 22 C 0.463 3.537 23 O -0.497 6.497 24 O -0.360 6.360 25 C 0.036 3.964 26 H 0.032 0.968 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.329 0.671 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 -4.868 18.568 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.199 4.199 3 C 0.075 3.925 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.101 0.899 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.709 3.291 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.196 1.196 13 N -0.294 5.294 14 C -0.040 4.040 15 C -0.044 4.044 16 C -0.120 4.120 17 C -0.133 4.133 18 C -0.146 4.146 19 C -0.123 4.123 20 C -0.078 4.078 21 C -0.116 4.116 22 C 0.305 3.695 23 O -0.383 6.383 24 O -0.277 6.277 25 C -0.058 4.058 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.162 -4.224 18.354 18.835 hybrid contribution 0.570 -2.029 -0.019 2.108 sum 0.732 -6.253 18.335 19.386 Atomic orbital electron populations 1.21667 0.95639 0.99797 1.02407 1.22520 0.97380 1.01027 0.98980 1.19764 0.96139 0.88226 0.88336 0.94823 1.20869 1.31175 1.12732 0.87959 0.89909 1.24874 0.95502 0.96545 0.96167 1.69878 1.44982 1.40174 0.98826 0.87003 0.81204 0.83981 0.76890 1.20603 1.22424 1.19596 1.60762 1.03521 1.62682 1.02436 1.20969 0.97980 0.95498 0.89588 1.19764 0.94391 0.95179 0.95104 1.21034 0.99986 0.94045 0.96896 1.21134 0.97693 0.99647 0.94818 1.20990 0.97362 0.96489 0.99796 1.20864 1.00023 0.95362 0.96075 1.19035 0.97778 0.94872 0.96083 1.20417 0.98884 0.87902 1.04388 1.23695 0.85227 0.83819 0.76750 1.90680 1.23329 1.85278 1.39058 1.86524 1.51290 1.16177 1.73680 1.23249 0.95303 0.88204 0.99046 0.94867 0.89838 0.94279 0.95082 0.93139 0.92716 0.85055 0.95825 0.90352 0.85709 0.86206 0.86327 0.86434 0.86698 0.86671 0.92016 0.88134 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.41 37.16 0.35 -2.32 16 2 C -0.16 -3.36 5.22 -26.73 -0.14 -3.49 16 3 C 0.18 4.22 1.93 -68.86 -0.13 4.09 16 4 H 0.03 0.82 6.76 -51.93 -0.35 0.47 16 5 C -0.49 -13.27 7.83 -34.44 -0.27 -13.54 16 6 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 7 C 0.07 1.98 5.42 -17.82 -0.10 1.88 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 9 Si 0.88 21.61 24.32 -169.99 -4.13 17.48 16 10 H -0.28 -6.69 6.92 56.52 0.39 -6.30 16 11 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 13 N -0.66 -13.19 6.20 -109.22 -0.68 -13.86 16 14 C 0.09 1.56 4.91 -4.97 -0.02 1.54 16 15 C -0.04 -0.70 5.44 -104.62 -0.57 -1.26 16 16 C -0.10 -1.49 9.67 -39.58 -0.38 -1.87 16 17 C -0.11 -1.45 10.05 -39.58 -0.40 -1.85 16 18 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 19 C -0.11 -1.32 9.68 -39.59 -0.38 -1.70 16 20 C -0.08 -1.09 4.37 -104.62 -0.46 -1.55 16 21 C -0.08 -1.00 5.29 -29.03 -0.15 -1.15 16 22 C 0.46 6.49 7.17 36.01 0.26 6.75 16 23 O -0.50 -8.18 15.78 -18.75 -0.30 -8.48 16 24 O -0.36 -4.58 10.57 -39.27 -0.41 -4.99 16 25 C 0.04 0.35 10.56 101.05 1.07 1.41 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.86 6.85 -51.93 -0.36 1.50 16 28 H 0.04 0.66 6.21 -51.93 -0.32 0.34 16 29 H 0.03 0.59 7.52 -51.93 -0.39 0.19 16 30 H 0.05 1.13 3.42 -51.93 -0.18 0.96 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.33 6.13 4.78 -39.29 -0.19 5.94 16 33 H 0.02 0.42 6.12 -51.93 -0.32 0.10 16 34 H 0.08 1.40 7.79 -51.93 -0.40 0.99 16 35 H 0.12 1.73 8.04 -52.48 -0.42 1.31 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.11 1.10 8.05 -51.93 -0.42 0.68 16 40 H 0.12 1.55 4.92 -51.93 -0.26 1.30 16 41 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -31.84 341.92 -7.49 -39.33 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.16 Total: 6.60 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.73 Total: -14.99 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.10 Total: -40.10 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.71 Total: -13.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.13 Total: 17.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.84 -7.49 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.582 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds