Wall clock time and date at job start Tue Mar 31 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47101 * 2 1 4 4 H 1.08993 * 109.46831 * 185.24062 * 3 2 1 5 5 C 1.50704 * 109.46759 * 305.23757 * 3 2 1 6 6 H 1.08006 * 119.99491 * 120.00223 * 5 3 2 7 7 C 1.37866 * 120.00307 * 299.99587 * 5 3 2 8 8 N 1.31516 * 120.00315 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99985 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.47154 * 89.99846 * 9 7 5 11 11 H 1.48494 * 109.47290 * 209.99859 * 9 7 5 12 12 H 1.48499 * 109.47120 * 329.99955 * 9 7 5 13 13 N 1.46906 * 109.47024 * 65.23602 * 3 2 1 14 14 C 1.46899 * 110.99468 * 86.28323 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.94724 * 14 13 3 16 16 C 1.38256 * 120.00217 * 259.99977 * 15 14 13 17 17 C 1.38213 * 120.00237 * 180.02562 * 16 15 14 18 18 C 1.38263 * 119.99798 * 359.97438 * 17 16 15 19 19 C 1.38209 * 120.00065 * 359.97438 * 18 17 16 20 20 C 1.38216 * 120.00108 * 79.73039 * 15 14 13 21 21 C 1.50708 * 119.99817 * 359.97438 * 20 15 14 22 22 C 1.50699 * 109.47008 * 84.99743 * 21 20 15 23 23 O 1.20823 * 120.00113 * 0.02562 * 22 21 20 24 24 O 1.34234 * 119.99710 * 179.97438 * 22 21 20 25 25 C 1.45202 * 116.99744 * 180.02562 * 24 22 21 26 26 H 1.08997 * 109.46729 * 174.90676 * 1 2 3 27 27 H 1.08999 * 109.46957 * 54.90479 * 1 2 3 28 28 H 1.09001 * 109.46952 * 294.90806 * 1 2 3 29 29 H 1.09000 * 109.47265 * 119.99870 * 2 1 3 30 30 H 1.09001 * 109.47023 * 240.00117 * 2 1 3 31 31 H 0.97004 * 120.00056 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00076 * 322.33060 * 13 3 2 33 33 H 1.08995 * 109.47219 * 294.94555 * 14 13 3 34 34 H 1.08999 * 109.47280 * 54.95231 * 14 13 3 35 35 H 1.08004 * 119.99770 * 359.97438 * 16 15 14 36 36 H 1.08001 * 119.99840 * 179.97438 * 17 16 15 37 37 H 1.07998 * 119.99546 * 179.97438 * 18 17 16 38 38 H 1.08001 * 120.00234 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.46903 * 205.00042 * 21 20 15 40 40 H 1.09001 * 109.47072 * 324.99748 * 21 20 15 41 41 H 1.09003 * 109.46759 * 60.00435 * 25 24 22 42 42 H 1.09002 * 109.46986 * 180.02562 * 25 24 22 43 43 H 1.09001 * 109.47039 * 300.00182 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1260 1.4439 -0.0939 5 6 1.4346 2.1893 -1.1605 6 1 0.8256 3.0632 -0.9816 7 6 1.6580 1.7571 -2.4505 8 7 1.1300 2.4091 -3.4633 9 14 2.7108 0.2453 -2.7598 10 1 1.8495 -0.9645 -2.7682 11 1 3.3923 0.3768 -4.0726 12 1 3.7275 0.1216 -1.6845 13 7 1.6563 2.0976 1.2577 14 6 2.6508 1.8431 2.3084 15 6 2.2897 2.6290 3.5426 16 6 2.9347 3.8207 3.8168 17 6 2.6039 4.5411 4.9489 18 6 1.6274 4.0703 5.8071 19 6 0.9818 2.8795 5.5325 20 6 1.3096 2.1611 4.3976 21 6 0.6018 0.8654 4.0953 22 6 1.4138 -0.2868 4.6282 23 8 2.4597 -0.0774 5.1957 24 8 0.9746 -1.5457 4.4733 25 6 1.8080 -2.6056 5.0122 26 1 -0.3633 -1.0236 -0.0912 27 1 -0.3633 0.5908 -0.8408 28 1 -0.3633 0.4328 0.9321 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.2870 2.1048 -4.3709 32 1 0.7365 1.8050 1.5518 33 1 2.6644 0.7795 2.5460 34 1 3.6363 2.1498 1.9580 35 1 3.6978 4.1882 3.1466 36 1 3.1082 5.4718 5.1633 37 1 1.3692 4.6330 6.6920 38 1 0.2193 2.5114 6.2030 39 1 -0.3796 0.8684 4.5696 40 1 0.4839 0.7588 3.0170 41 1 1.9236 -2.4659 6.0871 42 1 1.3388 -3.5704 4.8192 43 1 2.7873 -2.5762 4.5345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846984603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:28 Heat of formation + Delta-G solvation = -77.019144 kcal Electronic energy + Delta-G solvation = -24011.869232 eV Core-core repulsion = 20635.373471 eV Total energy + Delta-G solvation = -3376.495761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75972 -40.33445 -38.45780 -37.52482 -34.98026 -33.93066 -33.39777 -31.32170 -29.78223 -28.79339 -27.82296 -25.84744 -25.01370 -23.37324 -22.43384 -21.45862 -21.22790 -18.73000 -18.56067 -17.79582 -17.75980 -17.17590 -16.91556 -16.70596 -16.13362 -15.74816 -15.37860 -14.97789 -14.62765 -14.52724 -14.45202 -14.21637 -14.19273 -14.01588 -13.33278 -13.22413 -13.09987 -12.97501 -12.89727 -12.63508 -12.48503 -12.28167 -11.90734 -11.83205 -11.74595 -11.67316 -11.62989 -11.29195 -11.12999 -10.68264 -9.70253 -9.60067 -9.05973 -8.23387 -6.22699 0.36497 0.53137 1.11862 1.28681 1.34292 1.42459 1.79968 2.33201 2.86834 3.11025 3.47034 3.65796 3.87319 3.96029 3.98627 4.07451 4.23077 4.27307 4.27827 4.28746 4.33056 4.37322 4.44850 4.49660 4.60568 4.66897 4.70634 4.80952 4.86683 5.04195 5.12668 5.15090 5.17098 5.24589 5.33998 5.57012 5.59130 5.63515 5.71259 5.75222 5.99719 6.14975 6.65737 6.67943 6.70408 6.82573 7.40094 8.93738 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.005495 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.739367 B = 5094.458020 C = 6388.346394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C 0.189 3.811 4 H 0.021 0.979 5 C -0.483 4.483 6 H 0.039 0.961 7 C 0.018 3.982 8 N -0.948 5.948 9 Si 0.937 3.063 10 H -0.264 1.264 11 H -0.301 1.301 12 H -0.257 1.257 13 N -0.670 5.670 14 C 0.099 3.901 15 C -0.072 4.072 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.125 4.125 19 C -0.109 4.109 20 C -0.086 4.086 21 C -0.078 4.078 22 C 0.465 3.535 23 O -0.528 6.528 24 O -0.364 6.364 25 C 0.028 3.972 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.263 0.737 32 H 0.337 0.663 33 H 0.024 0.976 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.131 0.869 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -6.327 21.160 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.196 4.196 3 C 0.079 3.921 4 H 0.039 0.961 5 C -0.521 4.521 6 H 0.058 0.942 7 C -0.179 4.179 8 N -0.589 5.589 9 Si 0.765 3.235 10 H -0.190 1.190 11 H -0.229 1.229 12 H -0.182 1.182 13 N -0.302 5.302 14 C -0.030 4.030 15 C -0.072 4.072 16 C -0.141 4.141 17 C -0.137 4.137 18 C -0.143 4.143 19 C -0.127 4.127 20 C -0.087 4.087 21 C -0.115 4.115 22 C 0.309 3.691 23 O -0.416 6.416 24 O -0.280 6.280 25 C -0.065 4.065 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.167 0.833 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.149 0.851 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.307 -5.699 20.973 21.735 hybrid contribution 0.677 -1.492 -0.706 1.784 sum 0.370 -7.191 20.266 21.508 Atomic orbital electron populations 1.21596 0.94437 1.00948 1.02087 1.22421 0.98470 0.99150 0.99543 1.19520 0.94906 0.89374 0.88285 0.96092 1.21028 1.29907 1.11463 0.89741 0.94241 1.25589 0.96847 0.99520 0.95903 1.70025 1.47203 1.42368 0.99334 0.86043 0.79951 0.80833 0.76683 1.19022 1.22874 1.18207 1.60586 1.04611 1.62749 1.02296 1.20836 0.96599 0.95889 0.89658 1.19713 0.96338 0.95991 0.95158 1.21186 1.00436 0.94402 0.98083 1.21443 0.97927 1.00261 0.94032 1.21437 0.96195 0.96315 1.00319 1.21267 1.00421 0.95292 0.95726 1.19243 0.97406 0.95636 0.96392 1.20490 1.00164 0.86850 1.04037 1.23914 0.84730 0.84458 0.76033 1.90668 1.24598 1.85737 1.40645 1.86515 1.51717 1.16168 1.73608 1.23535 0.95083 0.88603 0.99287 0.92298 0.93407 0.92036 0.92552 0.94305 0.92740 0.84152 0.95774 0.91609 0.86224 0.83862 0.83111 0.83555 0.83318 0.87535 0.91446 0.85065 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.41 71.98 0.68 -4.26 16 2 C -0.16 -6.32 5.22 30.60 0.16 -6.16 16 3 C 0.19 8.66 1.93 44.17 0.09 8.74 16 4 H 0.02 1.02 6.76 -2.39 -0.02 1.01 16 5 C -0.48 -27.01 7.83 25.60 0.20 -26.81 16 6 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 7 C 0.02 1.05 5.42 84.65 0.46 1.51 16 8 N -0.95 -58.85 13.96 21.44 0.30 -58.55 16 9 Si 0.94 44.82 24.32 68.60 1.67 46.49 16 10 H -0.26 -11.95 6.92 99.48 0.69 -11.26 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 12 H -0.26 -11.66 6.53 99.48 0.65 -11.01 16 13 N -0.67 -26.77 6.20 -499.45 -3.09 -29.87 16 14 C 0.10 3.48 4.91 85.56 0.42 3.90 16 15 C -0.07 -2.23 5.44 -19.86 -0.11 -2.34 16 16 C -0.12 -3.57 9.67 22.27 0.22 -3.35 16 17 C -0.12 -2.78 10.05 22.27 0.22 -2.55 16 18 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 19 C -0.11 -2.41 9.68 22.27 0.22 -2.19 16 20 C -0.09 -2.29 4.37 -19.86 -0.09 -2.38 16 21 C -0.08 -1.80 5.29 29.10 0.15 -1.65 16 22 C 0.46 12.10 7.17 71.24 0.51 12.61 16 23 O -0.53 -16.67 15.78 21.97 0.35 -16.33 16 24 O -0.36 -8.34 10.57 -51.46 -0.54 -8.89 16 25 C 0.03 0.48 10.56 113.37 1.20 1.68 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 2.11 6.85 -2.39 -0.02 2.10 16 28 H 0.06 1.96 6.21 -2.39 -0.01 1.94 16 29 H 0.06 1.99 7.52 -2.39 -0.02 1.97 16 30 H 0.04 1.66 3.42 -2.39 -0.01 1.65 16 31 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 32 H 0.34 12.37 4.78 -89.69 -0.43 11.94 16 33 H 0.02 0.84 6.12 -2.39 -0.01 0.82 16 34 H 0.07 2.41 7.79 -2.39 -0.02 2.39 16 35 H 0.12 3.43 8.04 -2.91 -0.02 3.41 16 36 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.15 2.32 8.05 -2.39 -0.02 2.30 16 40 H 0.11 2.65 4.92 -2.39 -0.01 2.64 16 41 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 42 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 Total: -1.00 -71.04 341.92 3.74 -67.31 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.51 Total: 25.44 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 4.55 Total: -25.61 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.80 Total: -88.42 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.20 Total: -25.21 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.67 Total: 46.49 kcal Total: -71.04 3.74 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.711 kcal (2) G-P(sol) polarization free energy of solvation -71.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds