Wall clock time and date at job start Tue Mar 31 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 H 1.09003 * 109.46913 * 183.89907 * 3 2 1 5 5 C 1.50700 * 109.47042 * 303.89968 * 3 2 1 6 6 H 1.08000 * 120.00014 * 115.36533 * 5 3 2 7 7 C 1.37874 * 120.00191 * 295.35546 * 5 3 2 8 8 N 1.31515 * 120.00080 * 354.19681 * 7 5 3 9 9 Si 1.86798 * 119.99986 * 174.19347 * 7 5 3 10 10 H 1.48507 * 109.47056 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47560 * 300.00204 * 9 7 5 12 12 H 1.48498 * 109.47052 * 60.00617 * 9 7 5 13 13 N 1.46896 * 109.47135 * 63.90002 * 3 2 1 14 14 C 1.46899 * 110.99857 * 80.80501 * 13 3 2 15 15 C 1.53010 * 109.46868 * 184.83675 * 14 13 3 16 16 C 1.50700 * 109.46889 * 180.02562 * 15 14 13 17 17 O 1.20828 * 120.00174 * 0.02562 * 16 15 14 18 18 O 1.34225 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.45202 * 117.00171 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.46732 * 179.97438 * 19 18 16 21 21 C 1.38232 * 119.99689 * 269.71705 * 20 19 18 22 22 C 1.38245 * 119.99817 * 179.76834 * 21 20 19 23 23 C 1.38232 * 119.99712 * 0.51253 * 22 21 20 24 24 C 1.38238 * 120.00091 * 359.74583 * 23 22 21 25 25 C 1.38233 * 120.00184 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.47483 * 64.86845 * 1 2 3 27 27 H 1.08999 * 109.47210 * 184.86683 * 1 2 3 28 28 H 1.09003 * 109.47338 * 304.86327 * 1 2 3 29 29 H 1.09003 * 109.46846 * 240.00223 * 2 1 3 30 30 H 1.08994 * 109.47484 * 120.00578 * 2 1 3 31 31 H 0.97001 * 120.00049 * 354.16763 * 8 7 5 32 32 H 1.00898 * 111.00085 * 316.85394 * 13 3 2 33 33 H 1.09003 * 109.47152 * 304.83386 * 14 13 3 34 34 H 1.08991 * 109.47653 * 64.83747 * 14 13 3 35 35 H 1.08996 * 109.47254 * 299.99487 * 15 14 13 36 36 H 1.09001 * 109.47023 * 60.00183 * 15 14 13 37 37 H 1.08993 * 109.46862 * 299.99185 * 19 18 16 38 38 H 1.08993 * 109.47376 * 59.99483 * 19 18 16 39 39 H 1.08005 * 120.00429 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.99927 * 180.23644 * 22 21 20 41 41 H 1.08003 * 119.99844 * 179.72393 * 23 22 21 42 42 H 1.08001 * 119.99446 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00226 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1277 1.4432 -0.0699 5 6 1.4602 2.1802 -1.1793 6 1 0.7873 3.0097 -1.0197 7 6 1.7891 1.7964 -2.4621 8 7 2.6948 0.8630 -2.6574 9 14 0.9481 2.6019 -3.9226 10 1 1.4743 2.0162 -5.1817 11 1 -0.5160 2.3672 -3.8422 12 1 1.2171 4.0622 -3.9051 13 7 1.6287 2.1072 1.2437 14 6 2.5284 1.7561 2.3506 15 6 2.0010 2.3678 3.6502 16 6 2.9243 2.0082 4.7856 17 8 3.9039 1.3324 4.5768 18 8 2.6585 2.4385 6.0289 19 6 3.5914 2.0543 7.0730 20 6 3.1334 2.6248 8.3906 21 6 3.5675 3.8748 8.7907 22 6 3.1436 4.4002 9.9971 23 6 2.2941 3.6711 10.8081 24 6 1.8643 2.4189 10.4104 25 6 2.2836 1.8959 9.2014 26 1 -0.3634 0.4365 -0.9304 27 1 -0.3633 -1.0239 0.0872 28 1 -0.3634 0.5874 0.8432 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1920 0.5047 -1.9055 32 1 0.6711 1.8864 1.4722 33 1 2.5740 0.6717 2.4518 34 1 3.5260 2.1441 2.1451 35 1 1.9554 3.4521 3.5491 36 1 1.0034 1.9797 3.8557 37 1 3.6321 0.9673 7.1419 38 1 4.5824 2.4406 6.8350 39 1 4.2345 4.4427 8.1590 40 1 3.4796 5.3783 10.3080 41 1 1.9665 4.0797 11.7527 42 1 1.2010 1.8492 11.0443 43 1 1.9482 0.9175 8.8909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846985054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:29 Heat of formation + Delta-G solvation = -73.640087 kcal Electronic energy + Delta-G solvation = -22130.987304 eV Core-core repulsion = 18754.638069 eV Total energy + Delta-G solvation = -3376.349234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61112 -39.43643 -37.14620 -36.42742 -33.51628 -32.51074 -31.28899 -31.26733 -29.40792 -26.93315 -25.58656 -23.57428 -22.97349 -22.96946 -21.63825 -20.55811 -19.54491 -17.67454 -17.42000 -16.81143 -16.75204 -16.17182 -15.49508 -15.28861 -14.88006 -14.06646 -14.00024 -13.77941 -13.65262 -13.45733 -13.27657 -13.17155 -12.68597 -12.60601 -12.51502 -11.73208 -11.52447 -11.47314 -11.30164 -11.22823 -11.08560 -10.80535 -10.75305 -10.50397 -10.22566 -10.06613 -10.01748 -9.84150 -9.29960 -9.23272 -8.58942 -8.26791 -7.37606 -6.27382 -3.97313 0.80939 1.02474 2.22295 2.63201 3.47689 3.49075 3.49867 3.67803 4.29092 4.42301 4.56174 4.61178 4.73928 4.79409 4.86314 5.04918 5.09891 5.14917 5.20659 5.26323 5.41647 5.55627 5.59124 5.65133 5.67542 6.04167 6.09347 6.11963 6.13181 6.18368 6.19636 6.29571 6.34146 6.41197 6.58546 6.70186 6.99661 7.05916 7.27711 7.29596 7.73586 7.89805 8.25517 8.43958 8.64494 8.94014 9.70750 11.08282 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.002320 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.532704 B =12068.626257 C =12180.649388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.154 4.154 3 C 0.205 3.795 4 H 0.027 0.973 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.068 3.932 15 C -0.111 4.111 16 C 0.464 3.536 17 O -0.506 6.506 18 O -0.354 6.354 19 C 0.106 3.894 20 C -0.095 4.095 21 C -0.095 4.095 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.095 4.095 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.269 0.731 32 H 0.328 0.672 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 3.669 25.509 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.194 4.194 3 C 0.096 3.904 4 H 0.045 0.955 5 C -0.609 4.609 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.308 5.308 14 C -0.062 4.062 15 C -0.149 4.149 16 C 0.307 3.693 17 O -0.393 6.393 18 O -0.272 6.272 19 C 0.033 3.967 20 C -0.095 4.095 21 C -0.113 4.113 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.142 4.142 25 C -0.114 4.114 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.948 4.005 23.662 24.017 hybrid contribution 0.011 -0.990 2.018 2.248 sum -0.938 3.015 25.680 25.873 Atomic orbital electron populations 1.21543 0.96781 0.98243 1.01917 1.22225 0.96102 1.01367 0.99667 1.19315 0.95588 0.88453 0.87000 0.95501 1.21815 1.30468 1.17681 0.90976 0.92645 1.25714 0.96716 0.95980 1.00181 1.70790 1.22391 1.26687 1.35410 0.83596 0.75586 0.75576 0.75827 1.21020 1.21561 1.21525 1.60851 1.04857 1.62531 1.02569 1.21737 0.98216 0.97497 0.88740 1.21459 0.98146 1.04979 0.90284 1.23993 0.85569 0.76468 0.83277 1.90680 1.28546 1.35959 1.84156 1.86595 1.52154 1.70894 1.17548 1.21777 0.92014 1.00036 0.82878 1.19552 0.99601 0.95631 0.94758 1.21132 0.99313 0.94407 0.96461 1.21179 0.98237 1.00101 0.94622 1.21248 0.97290 0.94750 0.99687 1.21172 1.00319 0.96111 0.96572 1.21117 0.96000 0.99988 0.94254 0.91320 0.95473 0.94602 0.91192 0.96045 0.92010 0.85346 0.95221 0.90855 0.86860 0.88083 0.90314 0.90247 0.85676 0.85683 0.85856 0.85713 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.38 37.16 0.35 -2.28 16 2 C -0.15 -3.54 5.46 -26.73 -0.15 -3.68 16 3 C 0.20 5.04 1.95 -68.87 -0.13 4.91 16 4 H 0.03 0.74 7.31 -51.93 -0.38 0.36 16 5 C -0.57 -15.55 7.42 -34.44 -0.26 -15.80 16 6 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 7 C 0.02 0.49 5.27 -17.82 -0.09 0.39 16 8 N -0.92 -27.11 12.88 55.43 0.71 -26.40 16 9 Si 1.07 24.99 29.91 -169.99 -5.08 19.90 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.04 6.25 -107.95 -0.67 -14.72 16 14 C 0.07 1.23 4.80 -3.82 -0.02 1.21 16 15 C -0.11 -1.54 6.02 -27.88 -0.17 -1.71 16 16 C 0.46 6.73 7.96 36.01 0.29 7.02 16 17 O -0.51 -8.77 15.73 -18.75 -0.29 -9.06 16 18 O -0.35 -4.55 10.20 -39.24 -0.40 -4.95 16 19 C 0.11 1.15 5.59 36.01 0.20 1.35 16 20 C -0.10 -0.92 5.52 -104.62 -0.58 -1.50 16 21 C -0.10 -0.83 9.70 -39.58 -0.38 -1.22 16 22 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 23 C -0.11 -0.79 10.05 -39.58 -0.40 -1.19 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 25 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 26 H 0.07 1.56 7.30 -51.93 -0.38 1.18 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.66 6.24 -51.93 -0.32 0.34 16 29 H 0.07 1.78 6.27 -51.93 -0.33 1.46 16 30 H 0.02 0.45 7.04 -51.93 -0.37 0.09 16 31 H 0.27 7.96 6.04 -40.82 -0.25 7.71 16 32 H 0.33 6.31 6.44 -39.29 -0.25 6.06 16 33 H 0.03 0.56 6.96 -51.93 -0.36 0.20 16 34 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 35 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.08 0.82 8.07 -51.93 -0.42 0.41 16 39 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -31.47 355.60 -9.38 -40.85 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.48 Total: 5.38 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.52 Total: -16.35 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.04 Total: -41.12 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.70 Total: -14.02 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.47 -9.38 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846985054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.789 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds