Wall clock time and date at job start Tue Mar 31 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 H 1.09003 * 109.46913 * 183.89907 * 3 2 1 5 5 C 1.50700 * 109.47042 * 303.89968 * 3 2 1 6 6 H 1.08000 * 120.00014 * 115.36533 * 5 3 2 7 7 C 1.37874 * 120.00191 * 295.35546 * 5 3 2 8 8 N 1.31515 * 120.00080 * 354.19681 * 7 5 3 9 9 Si 1.86798 * 119.99986 * 174.19347 * 7 5 3 10 10 H 1.48507 * 109.47056 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47560 * 300.00204 * 9 7 5 12 12 H 1.48498 * 109.47052 * 60.00617 * 9 7 5 13 13 N 1.46896 * 109.47135 * 63.90002 * 3 2 1 14 14 C 1.46899 * 110.99857 * 80.80501 * 13 3 2 15 15 C 1.53010 * 109.46868 * 184.83675 * 14 13 3 16 16 C 1.50700 * 109.46889 * 180.02562 * 15 14 13 17 17 O 1.20828 * 120.00174 * 0.02562 * 16 15 14 18 18 O 1.34225 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.45202 * 117.00171 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.46732 * 179.97438 * 19 18 16 21 21 C 1.38232 * 119.99689 * 269.71705 * 20 19 18 22 22 C 1.38245 * 119.99817 * 179.76834 * 21 20 19 23 23 C 1.38232 * 119.99712 * 0.51253 * 22 21 20 24 24 C 1.38238 * 120.00091 * 359.74583 * 23 22 21 25 25 C 1.38233 * 120.00184 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.47483 * 64.86845 * 1 2 3 27 27 H 1.08999 * 109.47210 * 184.86683 * 1 2 3 28 28 H 1.09003 * 109.47338 * 304.86327 * 1 2 3 29 29 H 1.09003 * 109.46846 * 240.00223 * 2 1 3 30 30 H 1.08994 * 109.47484 * 120.00578 * 2 1 3 31 31 H 0.97001 * 120.00049 * 354.16763 * 8 7 5 32 32 H 1.00898 * 111.00085 * 316.85394 * 13 3 2 33 33 H 1.09003 * 109.47152 * 304.83386 * 14 13 3 34 34 H 1.08991 * 109.47653 * 64.83747 * 14 13 3 35 35 H 1.08996 * 109.47254 * 299.99487 * 15 14 13 36 36 H 1.09001 * 109.47023 * 60.00183 * 15 14 13 37 37 H 1.08993 * 109.46862 * 299.99185 * 19 18 16 38 38 H 1.08993 * 109.47376 * 59.99483 * 19 18 16 39 39 H 1.08005 * 120.00429 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.99927 * 180.23644 * 22 21 20 41 41 H 1.08003 * 119.99844 * 179.72393 * 23 22 21 42 42 H 1.08001 * 119.99446 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00226 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1277 1.4432 -0.0699 5 6 1.4602 2.1802 -1.1793 6 1 0.7873 3.0097 -1.0197 7 6 1.7891 1.7964 -2.4621 8 7 2.6948 0.8630 -2.6574 9 14 0.9481 2.6019 -3.9226 10 1 1.4743 2.0162 -5.1817 11 1 -0.5160 2.3672 -3.8422 12 1 1.2171 4.0622 -3.9051 13 7 1.6287 2.1072 1.2437 14 6 2.5284 1.7561 2.3506 15 6 2.0010 2.3678 3.6502 16 6 2.9243 2.0082 4.7856 17 8 3.9039 1.3324 4.5768 18 8 2.6585 2.4385 6.0289 19 6 3.5914 2.0543 7.0730 20 6 3.1334 2.6248 8.3906 21 6 3.5675 3.8748 8.7907 22 6 3.1436 4.4002 9.9971 23 6 2.2941 3.6711 10.8081 24 6 1.8643 2.4189 10.4104 25 6 2.2836 1.8959 9.2014 26 1 -0.3634 0.4365 -0.9304 27 1 -0.3633 -1.0239 0.0872 28 1 -0.3634 0.5874 0.8432 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1920 0.5047 -1.9055 32 1 0.6711 1.8864 1.4722 33 1 2.5740 0.6717 2.4518 34 1 3.5260 2.1441 2.1451 35 1 1.9554 3.4521 3.5491 36 1 1.0034 1.9797 3.8557 37 1 3.6321 0.9673 7.1419 38 1 4.5824 2.4406 6.8350 39 1 4.2345 4.4427 8.1590 40 1 3.4796 5.3783 10.3080 41 1 1.9665 4.0797 11.7527 42 1 1.2010 1.8492 11.0443 43 1 1.9482 0.9175 8.8909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846985054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:28 Heat of formation + Delta-G solvation = -91.199217 kcal Electronic energy + Delta-G solvation = -22131.748725 eV Core-core repulsion = 18754.638069 eV Total energy + Delta-G solvation = -3377.110655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70639 -40.10717 -38.81481 -37.64973 -35.23904 -33.37537 -32.98199 -31.86296 -30.91643 -28.05106 -27.22100 -25.50841 -24.38203 -23.55468 -22.33836 -21.76838 -21.43545 -18.91515 -18.73444 -18.06709 -17.85987 -17.12917 -16.70740 -16.13185 -16.03021 -15.69380 -15.47216 -15.43938 -14.75055 -14.48097 -14.37916 -14.34141 -13.98644 -13.89201 -13.48647 -13.27844 -13.10363 -12.85029 -12.60123 -12.55542 -12.13434 -12.11056 -12.04255 -11.90999 -11.86254 -11.73784 -11.69908 -11.60241 -10.62253 -10.39660 -9.88668 -9.86135 -9.12753 -8.49459 -6.19992 0.15990 0.43898 1.07218 1.57957 1.64916 1.65355 1.83944 2.62814 2.84863 3.26956 3.43708 3.62645 3.71572 3.74907 3.94922 4.05654 4.15250 4.18666 4.24566 4.31144 4.34567 4.35642 4.49981 4.53725 4.57115 4.67209 4.78016 4.86658 4.96399 4.97473 5.09296 5.11901 5.20772 5.26950 5.41343 5.49347 5.54015 5.55273 5.56037 5.93934 6.02275 6.19707 6.51334 6.62382 6.74737 6.76179 7.56500 8.85978 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.002320 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.532704 B =12068.626257 C =12180.649388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 C 0.206 3.794 4 H -0.012 1.012 5 C -0.574 4.574 6 H 0.051 0.949 7 C -0.032 4.032 8 N -0.941 5.941 9 Si 1.110 2.890 10 H -0.291 1.291 11 H -0.269 1.269 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.074 3.926 15 C -0.100 4.100 16 C 0.471 3.529 17 O -0.541 6.541 18 O -0.351 6.351 19 C 0.105 3.895 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.108 4.108 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.340 0.660 33 H 0.020 0.980 34 H 0.050 0.950 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 4.682 27.492 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.187 4.187 3 C 0.097 3.903 4 H 0.006 0.994 5 C -0.612 4.612 6 H 0.070 0.930 7 C -0.229 4.229 8 N -0.580 5.580 9 Si 0.933 3.067 10 H -0.217 1.217 11 H -0.194 1.194 12 H -0.201 1.201 13 N -0.308 5.308 14 C -0.056 4.056 15 C -0.137 4.137 16 C 0.316 3.684 17 O -0.431 6.431 18 O -0.268 6.268 19 C 0.031 3.969 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.130 4.130 24 C -0.146 4.146 25 C -0.126 4.126 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.160 0.840 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.982 5.033 25.693 26.351 hybrid contribution 0.672 -1.279 1.554 2.122 sum -2.309 3.754 27.248 27.602 Atomic orbital electron populations 1.21462 0.94491 1.00095 1.01690 1.22085 0.98034 0.99801 0.98742 1.19103 0.93177 0.89685 0.88319 0.99400 1.22075 1.29769 1.17399 0.91964 0.93031 1.27052 0.96658 0.95867 1.03329 1.70905 1.23835 1.28380 1.34845 0.83010 0.75757 0.75333 0.72561 1.21674 1.19383 1.20073 1.60673 1.05919 1.62111 1.02093 1.21607 0.96924 0.97125 0.89936 1.21315 0.98944 1.05635 0.87814 1.23995 0.84877 0.75655 0.83910 1.90676 1.30014 1.37677 1.84730 1.86579 1.52567 1.70435 1.17203 1.21932 0.91699 1.00296 0.82927 1.19563 1.01012 0.96503 0.94393 1.21319 0.99717 0.94317 0.97354 1.21487 0.98025 1.01043 0.94099 1.21628 0.96455 0.94470 1.00466 1.21488 1.00319 0.96539 0.96281 1.21312 0.96063 1.00387 0.94858 0.93549 0.93068 0.92269 0.94314 0.94737 0.93459 0.83969 0.96176 0.93127 0.85287 0.85237 0.90199 0.90333 0.85250 0.83637 0.83322 0.83574 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 9.38 71.98 0.68 -4.09 16 2 C -0.15 -6.78 5.46 30.59 0.17 -6.62 16 3 C 0.21 10.34 1.95 44.17 0.09 10.42 16 4 H -0.01 -0.68 7.31 -2.39 -0.02 -0.70 16 5 C -0.57 -31.41 7.42 25.60 0.19 -31.22 16 6 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 7 C -0.03 -1.78 5.27 84.65 0.45 -1.33 16 8 N -0.94 -57.22 12.88 21.45 0.28 -56.94 16 9 Si 1.11 50.09 29.91 68.60 2.05 52.14 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.68 -27.60 6.25 -495.45 -3.10 -30.70 16 14 C 0.07 2.66 4.80 86.31 0.41 3.07 16 15 C -0.10 -2.60 6.02 29.85 0.18 -2.42 16 16 C 0.47 13.31 7.96 71.24 0.57 13.87 16 17 O -0.54 -18.91 15.73 21.96 0.35 -18.56 16 18 O -0.35 -8.67 10.20 -51.37 -0.52 -9.20 16 19 C 0.10 2.23 5.59 71.24 0.40 2.63 16 20 C -0.11 -2.14 5.52 -19.86 -0.11 -2.25 16 21 C -0.11 -1.80 9.70 22.27 0.22 -1.58 16 22 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 23 C -0.11 -1.30 10.05 22.27 0.22 -1.08 16 24 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 25 C -0.11 -1.75 9.70 22.27 0.22 -1.53 16 26 H 0.05 2.04 7.30 -2.38 -0.02 2.02 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 2.04 6.24 -2.39 -0.01 2.03 16 29 H 0.04 2.02 6.27 -2.39 -0.01 2.01 16 30 H 0.03 1.47 7.04 -2.39 -0.02 1.45 16 31 H 0.26 15.82 6.04 -92.71 -0.56 15.26 16 32 H 0.34 12.39 6.44 -89.70 -0.58 11.81 16 33 H 0.02 0.76 6.96 -2.39 -0.02 0.75 16 34 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 38 H 0.08 1.66 8.07 -2.39 -0.02 1.64 16 39 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -69.11 355.60 3.80 -65.31 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.63 Total: 22.92 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.12 Total: -24.98 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.82 Total: -87.64 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.18 Total: -27.76 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.05 Total: 52.14 kcal Total: -69.11 3.80 -65.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846985054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.886 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds