Wall clock time and date at job start Tue Mar 31 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47091 * 90.00278 * 9 7 5 11 11 H 1.48498 * 109.47348 * 210.00277 * 9 7 5 12 12 H 1.48503 * 109.46963 * 330.00474 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 C 1.50699 * 109.46991 * 180.02562 * 15 14 13 17 17 O 1.20829 * 120.00066 * 359.97438 * 16 15 14 18 18 O 1.34231 * 120.00219 * 180.02562 * 16 15 14 19 19 C 1.45200 * 117.00037 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.46729 * 180.02562 * 19 18 16 21 21 C 1.38234 * 119.99913 * 269.72145 * 20 19 18 22 22 C 1.38233 * 120.00057 * 179.77163 * 21 20 19 23 23 C 1.38234 * 119.99866 * 0.50664 * 22 21 20 24 24 C 1.38233 * 120.00034 * 359.74998 * 23 22 21 25 25 C 1.38234 * 120.00145 * 89.99973 * 20 19 18 26 26 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 27 27 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 28 28 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 29 29 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 30 30 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 31 31 H 0.96995 * 120.00210 * 179.97438 * 8 7 5 32 32 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 33 33 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 34 34 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 35 35 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 36 36 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 37 37 H 1.09004 * 109.46759 * 299.99412 * 19 18 16 38 38 H 1.08994 * 109.47620 * 59.99674 * 19 18 16 39 39 H 1.08001 * 120.00344 * 0.02562 * 21 20 19 40 40 H 1.08005 * 120.00446 * 180.23371 * 22 21 20 41 41 H 1.07998 * 120.00198 * 179.72793 * 23 22 21 42 42 H 1.08004 * 119.99691 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00464 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5465 -0.3473 -0.8149 11 1 6.3528 0.9331 -2.8652 12 1 6.5494 2.0765 -0.7357 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 6 1.2262 5.6993 2.2845 17 8 1.3614 6.1919 1.1895 18 8 0.9983 6.4836 3.3498 19 6 0.9261 7.9141 3.1118 20 6 0.6670 8.6274 4.4137 21 6 -0.6311 8.8693 4.8228 22 6 -0.8689 9.5194 6.0193 23 6 0.1915 9.9369 6.8017 24 6 1.4896 9.6997 6.3901 25 6 1.7274 9.0449 5.1961 26 1 -0.3633 0.5981 -0.8357 27 1 -0.3633 -1.0227 -0.1001 28 1 -0.3633 0.4248 0.9358 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.7978 -0.0492 -2.9747 32 1 0.7987 1.7197 1.6189 33 1 2.5182 3.9269 0.6894 34 1 0.7651 3.7925 0.4126 35 1 0.3756 3.8293 2.8612 36 1 2.1288 3.9637 3.1380 37 1 1.8697 8.2603 2.6898 38 1 0.1164 8.1259 2.4136 39 1 -1.4596 8.5468 4.2096 40 1 -1.8831 9.7051 6.3408 41 1 0.0058 10.4487 7.7344 42 1 2.3181 10.0263 7.0012 43 1 2.7416 8.8603 4.8742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846985061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:32 Heat of formation + Delta-G solvation = -72.178600 kcal Electronic energy + Delta-G solvation = -22087.200092 eV Core-core repulsion = 18710.914233 eV Total energy + Delta-G solvation = -3376.285860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49145 -39.36891 -36.81408 -36.15302 -33.21447 -32.43156 -31.55868 -31.23871 -29.43599 -26.94447 -26.14802 -23.40532 -22.92101 -22.25260 -21.53125 -20.37222 -19.51845 -17.56461 -17.31756 -16.69551 -16.31545 -16.11188 -15.36094 -15.24395 -14.74874 -14.52832 -13.93652 -13.76329 -13.60680 -13.38491 -13.24126 -12.82180 -12.65789 -12.45845 -12.08142 -11.76455 -11.58291 -11.41538 -11.37853 -11.13180 -10.82089 -10.73913 -10.65302 -10.57200 -10.37320 -9.94029 -9.69225 -9.61512 -9.25003 -9.17044 -9.06583 -8.31705 -7.27097 -5.94158 -3.98120 0.86666 1.07465 2.35860 2.73875 3.35246 3.41396 3.45775 3.55966 4.36490 4.47822 4.48188 4.66360 4.78836 4.90910 4.93259 5.16032 5.20850 5.23606 5.31094 5.35981 5.39208 5.61585 5.70325 5.77987 5.84425 6.09368 6.16245 6.16669 6.17219 6.24306 6.34589 6.41853 6.49241 6.63691 6.67490 6.85066 7.09593 7.19193 7.48862 7.79021 7.87523 7.93350 8.27482 8.40216 8.74956 9.09091 9.66592 11.11454 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.002615 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.270298 B =10705.668086 C =11465.999125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.079 3.921 15 C -0.109 4.109 16 C 0.463 3.537 17 O -0.504 6.504 18 O -0.356 6.356 19 C 0.106 3.894 20 C -0.094 4.094 21 C -0.096 4.096 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.095 4.095 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.259 0.741 32 H 0.317 0.683 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 16.171 15.766 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.318 5.318 14 C -0.051 4.051 15 C -0.147 4.147 16 C 0.305 3.695 17 O -0.391 6.391 18 O -0.273 6.273 19 C 0.032 3.968 20 C -0.094 4.094 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.113 4.113 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.043 0.957 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.628 16.280 15.474 23.721 hybrid contribution 0.138 0.187 -0.739 0.775 sum -7.490 16.467 14.735 23.332 Atomic orbital electron populations 1.21887 0.99596 0.99753 0.99558 1.21770 0.91236 1.00219 1.03159 1.19165 0.95602 0.89976 0.84057 0.97865 1.21197 0.91199 1.36501 1.04289 0.92041 1.24961 0.98152 0.95666 0.95822 1.69869 1.34678 1.39552 1.09549 0.86536 0.85754 0.78363 0.76963 1.20770 1.21436 1.19981 1.60664 1.36001 1.01627 1.33546 1.21602 1.01849 0.89917 0.91769 1.21469 1.05319 0.85243 1.02641 1.24077 0.72256 0.91039 0.82088 1.90686 1.45283 1.76238 1.26927 1.86596 1.82700 1.19006 1.39039 1.21762 1.03112 0.77486 0.94404 1.19566 0.93866 0.99687 0.96292 1.21117 0.96135 0.97692 0.96461 1.21164 0.99291 0.98985 0.94771 1.21237 0.92837 0.99369 0.99620 1.21175 0.97116 0.99350 0.96518 1.21139 0.98877 0.97090 0.94212 0.93872 0.94345 0.94606 0.88173 0.93961 0.93085 0.86652 0.89799 0.95742 0.88381 0.86965 0.90258 0.90353 0.85745 0.85754 0.85905 0.85715 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.65 37.16 0.36 -2.53 16 2 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 3 C 0.22 5.47 2.02 -68.86 -0.14 5.33 16 4 H 0.00 0.10 7.85 -51.93 -0.41 -0.30 16 5 C -0.49 -13.70 8.55 -34.44 -0.29 -13.99 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.73 11.29 55.43 0.63 -25.11 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -14.30 6.27 -107.95 -0.68 -14.98 16 14 C 0.08 1.51 4.74 -3.82 -0.02 1.49 16 15 C -0.11 -1.59 6.11 -27.88 -0.17 -1.77 16 16 C 0.46 7.09 7.96 36.01 0.29 7.38 16 17 O -0.50 -9.24 15.73 -18.75 -0.29 -9.54 16 18 O -0.36 -4.80 10.20 -39.26 -0.40 -5.20 16 19 C 0.11 1.21 5.59 36.00 0.20 1.41 16 20 C -0.09 -0.96 5.52 -104.63 -0.58 -1.53 16 21 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 22 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 23 C -0.11 -0.83 10.05 -39.58 -0.40 -1.23 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.60 6.65 -51.93 -0.35 0.26 16 29 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.32 5.85 6.65 -39.29 -0.26 5.59 16 33 H 0.08 1.84 7.88 -51.93 -0.41 1.43 16 34 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -31.08 361.03 -9.64 -40.72 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.76 Total: 4.29 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.55 Total: -12.35 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.05 Total: -40.08 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.70 Total: -14.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.08 -9.64 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846985061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.455 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds