Wall clock time and date at job start Tue Mar 31 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47091 * 90.00278 * 9 7 5 11 11 H 1.48498 * 109.47348 * 210.00277 * 9 7 5 12 12 H 1.48503 * 109.46963 * 330.00474 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 C 1.50699 * 109.46991 * 180.02562 * 15 14 13 17 17 O 1.20829 * 120.00066 * 359.97438 * 16 15 14 18 18 O 1.34231 * 120.00219 * 180.02562 * 16 15 14 19 19 C 1.45200 * 117.00037 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.46729 * 180.02562 * 19 18 16 21 21 C 1.38234 * 119.99913 * 269.72145 * 20 19 18 22 22 C 1.38233 * 120.00057 * 179.77163 * 21 20 19 23 23 C 1.38234 * 119.99866 * 0.50664 * 22 21 20 24 24 C 1.38233 * 120.00034 * 359.74998 * 23 22 21 25 25 C 1.38234 * 120.00145 * 89.99973 * 20 19 18 26 26 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 27 27 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 28 28 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 29 29 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 30 30 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 31 31 H 0.96995 * 120.00210 * 179.97438 * 8 7 5 32 32 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 33 33 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 34 34 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 35 35 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 36 36 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 37 37 H 1.09004 * 109.46759 * 299.99412 * 19 18 16 38 38 H 1.08994 * 109.47620 * 59.99674 * 19 18 16 39 39 H 1.08001 * 120.00344 * 0.02562 * 21 20 19 40 40 H 1.08005 * 120.00446 * 180.23371 * 22 21 20 41 41 H 1.07998 * 120.00198 * 179.72793 * 23 22 21 42 42 H 1.08004 * 119.99691 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00464 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5465 -0.3473 -0.8149 11 1 6.3528 0.9331 -2.8652 12 1 6.5494 2.0765 -0.7357 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 6 1.2262 5.6993 2.2845 17 8 1.3614 6.1919 1.1895 18 8 0.9983 6.4836 3.3498 19 6 0.9261 7.9141 3.1118 20 6 0.6670 8.6274 4.4137 21 6 -0.6311 8.8693 4.8228 22 6 -0.8689 9.5194 6.0193 23 6 0.1915 9.9369 6.8017 24 6 1.4896 9.6997 6.3901 25 6 1.7274 9.0449 5.1961 26 1 -0.3633 0.5981 -0.8357 27 1 -0.3633 -1.0227 -0.1001 28 1 -0.3633 0.4248 0.9358 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.7978 -0.0492 -2.9747 32 1 0.7987 1.7197 1.6189 33 1 2.5182 3.9269 0.6894 34 1 0.7651 3.7925 0.4126 35 1 0.3756 3.8293 2.8612 36 1 2.1288 3.9637 3.1380 37 1 1.8697 8.2603 2.6898 38 1 0.1164 8.1259 2.4136 39 1 -1.4596 8.5468 4.2096 40 1 -1.8831 9.7051 6.3408 41 1 0.0058 10.4487 7.7344 42 1 2.3181 10.0263 7.0012 43 1 2.7416 8.8603 4.8742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846985061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:31 Heat of formation + Delta-G solvation = -89.487153 kcal Electronic energy + Delta-G solvation = -22087.950647 eV Core-core repulsion = 18710.914233 eV Total energy + Delta-G solvation = -3377.036415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64663 -40.08006 -38.37890 -37.54525 -34.96605 -33.54488 -33.11552 -31.84573 -30.93019 -28.46963 -27.46963 -25.09312 -23.81488 -23.53543 -22.29334 -21.77009 -21.30885 -18.80325 -18.39481 -18.06596 -17.78282 -17.15303 -16.68148 -16.44622 -16.02079 -15.90964 -15.53570 -14.95825 -14.72950 -14.42084 -14.33136 -14.02661 -13.92969 -13.70381 -13.37910 -13.31753 -13.12435 -12.97057 -12.65635 -12.52901 -12.21256 -12.10618 -12.08030 -11.98065 -11.70323 -11.66495 -11.52812 -11.39338 -11.03702 -10.42382 -9.86957 -9.84125 -9.08388 -8.07117 -6.18895 0.18262 0.45641 1.13497 1.41471 1.41836 1.52356 1.70255 2.44084 2.87111 3.18225 3.50639 3.71339 3.77239 3.79939 4.05636 4.10997 4.20465 4.22660 4.27050 4.42427 4.51939 4.57840 4.59189 4.59474 4.69075 4.72657 4.90172 4.99101 5.04238 5.11106 5.11828 5.26082 5.31633 5.38778 5.51227 5.57075 5.58007 5.60185 5.74413 5.90711 6.04089 6.33038 6.44212 6.69115 6.93455 6.99616 7.49711 8.96415 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.002615 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.270298 B =10705.668086 C =11465.999125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.223 3.777 4 H -0.035 1.035 5 C -0.513 4.513 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.920 5.920 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.084 3.916 15 C -0.096 4.096 16 C 0.470 3.530 17 O -0.542 6.542 18 O -0.351 6.351 19 C 0.104 3.896 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.128 4.128 23 C -0.113 4.113 24 C -0.129 4.129 25 C -0.110 4.110 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.260 0.740 32 H 0.334 0.666 33 H 0.048 0.952 34 H 0.015 0.985 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 16.716 18.225 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.115 3.885 4 H -0.017 1.017 5 C -0.552 4.552 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.560 5.560 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.313 5.313 14 C -0.046 4.046 15 C -0.134 4.134 16 C 0.314 3.686 17 O -0.432 6.432 18 O -0.268 6.268 19 C 0.031 3.969 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.146 4.146 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.128 4.128 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.329 16.830 17.971 25.992 hybrid contribution 0.317 0.106 -1.439 1.477 sum -8.012 16.936 16.532 24.987 Atomic orbital electron populations 1.21766 0.96141 1.01226 1.00648 1.21585 0.94339 0.98490 1.01480 1.18954 0.94150 0.90919 0.84506 1.01699 1.21483 0.92841 1.36541 1.04286 0.93090 1.25703 1.02393 0.95399 0.95586 1.70001 1.36232 1.39967 1.09845 0.85589 0.80736 0.78528 0.76961 1.19806 1.21060 1.19840 1.60511 1.37165 1.02411 1.31212 1.21444 0.99673 0.89090 0.94366 1.21305 1.07543 0.84659 0.99874 1.24103 0.71294 0.91406 0.81805 1.90680 1.47156 1.76930 1.28396 1.86580 1.82041 1.20203 1.37990 1.21922 1.03112 0.76222 0.95673 1.19561 0.94850 1.00842 0.96132 1.21316 0.95882 0.98091 0.97293 1.21491 1.00715 0.98211 0.94148 1.21624 0.92438 0.98583 1.00387 1.21479 0.98294 0.98775 0.96122 1.21315 0.98900 0.97691 0.94920 0.94822 0.92282 0.91840 0.91475 0.93913 0.93070 0.84690 0.93380 0.96682 0.84989 0.85637 0.90563 0.90151 0.85042 0.83479 0.83285 0.83680 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.65 71.98 0.69 -4.48 16 2 C -0.12 -5.65 5.36 30.60 0.16 -5.48 16 3 C 0.22 11.36 2.02 44.17 0.09 11.45 16 4 H -0.03 -2.00 7.85 -2.39 -0.02 -2.01 16 5 C -0.51 -29.15 8.55 25.60 0.22 -28.93 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.41 5.29 84.65 0.45 0.86 16 8 N -0.92 -54.01 11.29 21.45 0.24 -53.77 16 9 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.68 -28.09 6.27 -495.44 -3.11 -31.19 16 14 C 0.08 3.26 4.74 86.30 0.41 3.67 16 15 C -0.10 -2.69 6.11 29.85 0.18 -2.51 16 16 C 0.47 14.22 7.96 71.24 0.57 14.78 16 17 O -0.54 -20.30 15.73 21.95 0.35 -19.95 16 18 O -0.35 -9.22 10.20 -51.43 -0.52 -9.75 16 19 C 0.10 2.37 5.59 71.24 0.40 2.77 16 20 C -0.11 -2.24 5.52 -19.87 -0.11 -2.35 16 21 C -0.11 -1.81 9.70 22.27 0.22 -1.60 16 22 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 23 C -0.11 -1.37 10.05 22.27 0.22 -1.14 16 24 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 25 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.97 6.65 -2.39 -0.02 1.95 16 29 H 0.07 3.62 5.94 -2.39 -0.01 3.60 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.33 11.72 6.65 -89.69 -0.60 11.12 16 33 H 0.05 2.19 7.88 -2.39 -0.02 2.17 16 34 H 0.01 0.61 8.10 -2.39 -0.02 0.59 16 35 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 38 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 39 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -68.88 361.03 3.54 -65.34 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.39 Total: 19.86 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 4.16 Total: -17.73 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.86 Total: -84.96 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.18 Total: -29.70 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.88 3.54 -65.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846985061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.145 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds