Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47341 * 2 1 4 4 H 1.09000 * 109.47540 * 183.89985 * 3 2 1 5 5 C 1.50707 * 109.47087 * 303.90205 * 3 2 1 6 6 H 1.07997 * 120.00060 * 115.37111 * 5 3 2 7 7 C 1.37878 * 119.99626 * 295.36750 * 5 3 2 8 8 N 1.31512 * 119.99853 * 354.17774 * 7 5 3 9 9 Si 1.86794 * 119.99770 * 174.17567 * 7 5 3 10 10 H 1.48504 * 109.46996 * 269.99950 * 9 7 5 11 11 H 1.48496 * 109.47482 * 30.00058 * 9 7 5 12 12 H 1.48503 * 109.47233 * 149.99946 * 9 7 5 13 13 N 1.46902 * 109.47123 * 63.89572 * 3 2 1 14 14 C 1.46899 * 110.99771 * 80.81014 * 13 3 2 15 15 C 1.53000 * 109.47392 * 184.79581 * 14 13 3 16 16 O 1.45202 * 109.46979 * 64.99860 * 15 14 13 17 17 C 1.34228 * 116.99778 * 179.97438 * 16 15 14 18 18 O 1.20821 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00079 * 180.02562 * 17 16 15 20 20 C 1.50696 * 109.47345 * 180.02562 * 19 17 16 21 21 C 1.38235 * 119.99642 * 269.72752 * 20 19 17 22 22 C 1.38232 * 119.99905 * 179.76697 * 21 20 19 23 23 C 1.38240 * 119.99988 * 0.50409 * 22 21 20 24 24 C 1.38233 * 119.99718 * 359.75131 * 23 22 21 25 25 C 1.38226 * 120.00372 * 89.99959 * 20 19 17 26 26 H 1.09002 * 109.47148 * 304.86434 * 1 2 3 27 27 H 1.09002 * 109.47327 * 64.87009 * 1 2 3 28 28 H 1.09002 * 109.46748 * 184.86610 * 1 2 3 29 29 H 1.08999 * 109.47047 * 239.99930 * 2 1 3 30 30 H 1.08996 * 109.47352 * 120.00520 * 2 1 3 31 31 H 0.96994 * 120.00726 * 354.16551 * 8 7 5 32 32 H 1.00902 * 110.99829 * 316.86245 * 13 3 2 33 33 H 1.08994 * 109.47396 * 304.79484 * 14 13 3 34 34 H 1.08999 * 109.46755 * 64.79799 * 14 13 3 35 35 H 1.08997 * 109.47614 * 185.00642 * 15 14 13 36 36 H 1.09011 * 109.46885 * 305.00431 * 15 14 13 37 37 H 1.09005 * 109.46754 * 300.00358 * 19 17 16 38 38 H 1.08996 * 109.46838 * 60.00109 * 19 17 16 39 39 H 1.08010 * 120.00129 * 359.97438 * 21 20 19 40 40 H 1.08000 * 120.00177 * 180.22767 * 22 21 20 41 41 H 1.07995 * 119.99748 * 179.72340 * 23 22 21 42 42 H 1.08001 * 120.00058 * 179.97438 * 24 23 22 43 43 H 1.08008 * 120.00215 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1278 1.4432 -0.0699 5 6 1.4603 2.1802 -1.1793 6 1 0.7875 3.0098 -1.0197 7 6 1.7890 1.7961 -2.4621 8 7 2.6948 0.8629 -2.6573 9 14 0.9477 2.6013 -3.9226 10 1 -0.2758 1.8359 -4.2729 11 1 0.5759 3.9958 -3.5728 12 1 1.8740 2.6123 -5.0832 13 7 1.6287 2.1072 1.2437 14 6 2.5284 1.7562 2.3506 15 6 2.0016 2.3687 3.6500 16 8 0.7247 1.7651 3.9867 17 6 0.1241 2.1951 5.1075 18 8 0.6478 3.0478 5.7845 19 6 -1.2035 1.6142 5.5214 20 6 -1.6577 2.2626 6.8037 21 6 -1.3042 1.7102 8.0205 22 6 -1.7168 2.3077 9.1968 23 6 -2.4916 3.4518 9.1561 24 6 -2.8495 4.0012 7.9392 25 6 -2.4325 3.4066 6.7630 26 1 -0.3633 0.5875 0.8432 27 1 -0.3634 0.4364 -0.9304 28 1 -0.3633 -1.0240 0.0872 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.1921 0.5048 -1.9055 32 1 0.6711 1.8863 1.4722 33 1 2.5736 0.6719 2.4523 34 1 3.5262 2.1437 2.1447 35 1 2.7141 2.1839 4.4539 36 1 1.8724 3.4431 3.5189 37 1 -1.9405 1.7993 4.7400 38 1 -1.0982 0.5401 5.6745 39 1 -0.7028 0.8136 8.0523 40 1 -1.4375 1.8782 10.1475 41 1 -2.8177 3.9160 10.0751 42 1 -3.4553 4.8948 7.9074 43 1 -2.7121 3.8360 5.8122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846988938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -73.940010 kcal Electronic energy + Delta-G solvation = -22642.093933 eV Core-core repulsion = 19265.731693 eV Total energy + Delta-G solvation = -3376.362240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59191 -39.23906 -37.19433 -36.16561 -33.31649 -32.94535 -31.13330 -30.98986 -28.84799 -27.74817 -25.29397 -23.54593 -22.83707 -22.82339 -21.57403 -20.61826 -19.50531 -17.71224 -17.15637 -16.83376 -16.56659 -16.09172 -15.41801 -15.32757 -14.90421 -14.16057 -13.71700 -13.66331 -13.61761 -13.35052 -13.29576 -13.09359 -12.66258 -12.50157 -12.29682 -11.89724 -11.85808 -11.41626 -11.25406 -11.19915 -11.02277 -10.76326 -10.54350 -10.48590 -10.19575 -10.08053 -10.03826 -9.82745 -9.14099 -9.01386 -8.58671 -8.27995 -7.35712 -6.28725 -3.98360 1.03664 1.18283 2.21424 2.73855 3.45981 3.49718 3.61559 3.65478 4.32426 4.54444 4.55491 4.75808 4.82768 4.87212 4.96350 4.99419 5.19265 5.20904 5.27722 5.39101 5.40463 5.47992 5.67027 5.72023 5.79318 6.05328 6.10178 6.14941 6.18387 6.20329 6.26889 6.31660 6.34852 6.53424 6.72322 6.75444 6.98375 7.06147 7.27975 7.30247 7.78213 7.90015 8.26855 8.46225 8.65139 8.93518 9.69537 11.07068 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.002780 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.831334 B =10070.943107 C =10373.224875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.152 4.152 3 C 0.203 3.797 4 H 0.025 0.975 5 C -0.570 4.570 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.057 3.943 15 C 0.071 3.929 16 O -0.354 6.354 17 C 0.462 3.538 18 O -0.505 6.505 19 C -0.077 4.077 20 C -0.074 4.074 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.102 4.102 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.268 0.732 32 H 0.335 0.665 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 0.533 20.975 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.192 4.192 3 C 0.094 3.906 4 H 0.043 0.957 5 C -0.608 4.608 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.896 3.104 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.309 5.309 14 C -0.073 4.073 15 C -0.002 4.002 16 O -0.271 6.271 17 C 0.304 3.696 18 O -0.393 6.393 19 C -0.114 4.114 20 C -0.074 4.074 21 C -0.122 4.122 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.138 4.138 25 C -0.120 4.120 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.005 1.352 19.350 21.385 hybrid contribution 0.085 -0.824 1.911 2.083 sum -8.919 0.528 21.261 23.062 Atomic orbital electron populations 1.21532 0.96757 0.98248 1.01906 1.22201 0.96213 1.01275 0.99462 1.19330 0.95369 0.88549 0.87331 0.95699 1.21857 1.30365 1.17618 0.91003 0.92673 1.25698 0.96695 0.95969 1.00163 1.70760 1.22492 1.26814 1.35383 0.83573 0.75781 0.75512 0.75539 1.21587 1.21496 1.21280 1.60902 1.05459 1.62137 1.02408 1.22048 0.97982 0.97905 0.89352 1.23307 0.81122 0.98660 0.97151 1.86485 1.36478 1.62751 1.41358 1.23456 0.87091 0.80333 0.78683 1.90675 1.65229 1.30286 1.53071 1.20327 0.92579 1.01856 0.96639 1.19299 0.98457 0.96258 0.93430 1.21015 0.99148 1.00065 0.91960 1.21107 0.98471 0.96265 0.98032 1.21173 0.98380 0.96258 0.97892 1.21128 1.00286 0.99923 0.92423 1.21057 0.97455 0.94753 0.98730 0.94383 0.91492 0.95513 0.91335 0.96109 0.92036 0.84563 0.95056 0.89619 0.91431 0.90338 0.86519 0.86787 0.86098 0.86000 0.86104 0.85909 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.38 37.16 0.35 -2.28 16 2 C -0.15 -3.44 5.46 -26.73 -0.15 -3.58 16 3 C 0.20 4.93 1.95 -68.86 -0.13 4.79 16 4 H 0.03 0.66 7.31 -51.93 -0.38 0.29 16 5 C -0.57 -15.51 7.42 -34.44 -0.26 -15.76 16 6 H 0.05 1.55 7.82 -52.49 -0.41 1.14 16 7 C 0.02 0.50 5.27 -17.82 -0.09 0.41 16 8 N -0.92 -26.87 12.88 55.43 0.71 -26.16 16 9 Si 1.07 25.01 29.91 -169.99 -5.08 19.93 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.68 -14.26 6.25 -107.95 -0.67 -14.93 16 14 C 0.06 0.99 5.93 -3.82 -0.02 0.97 16 15 C 0.07 1.09 5.79 37.16 0.21 1.31 16 16 O -0.35 -5.30 9.68 -39.25 -0.38 -5.68 16 17 C 0.46 6.33 7.95 36.01 0.29 6.62 16 18 O -0.50 -8.30 15.78 -18.75 -0.30 -8.59 16 19 C -0.08 -0.75 5.94 -29.03 -0.17 -0.93 16 20 C -0.07 -0.78 4.37 -104.63 -0.46 -1.24 16 21 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 25 C -0.10 -1.04 9.70 -39.59 -0.38 -1.42 16 26 H 0.04 0.72 6.24 -51.93 -0.32 0.40 16 27 H 0.07 1.52 7.30 -51.93 -0.38 1.14 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.72 6.27 -51.93 -0.33 1.39 16 30 H 0.02 0.43 7.04 -51.93 -0.37 0.06 16 31 H 0.27 7.82 6.04 -40.82 -0.25 7.57 16 32 H 0.34 6.87 5.95 -39.29 -0.23 6.64 16 33 H 0.03 0.55 7.00 -51.93 -0.36 0.18 16 34 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 37 H 0.12 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.11 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -31.71 354.82 -9.24 -40.95 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.47 Total: 6.05 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.39 Total: -16.91 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.04 Total: -41.09 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.68 Total: -14.28 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.71 -9.24 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.993 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds