Wall clock time and date at job start Tue Mar 31 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47341 * 2 1 4 4 H 1.09000 * 109.47540 * 183.89985 * 3 2 1 5 5 C 1.50707 * 109.47087 * 303.90205 * 3 2 1 6 6 H 1.07997 * 120.00060 * 115.37111 * 5 3 2 7 7 C 1.37878 * 119.99626 * 295.36750 * 5 3 2 8 8 N 1.31512 * 119.99853 * 354.17774 * 7 5 3 9 9 Si 1.86794 * 119.99770 * 174.17567 * 7 5 3 10 10 H 1.48504 * 109.46996 * 269.99950 * 9 7 5 11 11 H 1.48496 * 109.47482 * 30.00058 * 9 7 5 12 12 H 1.48503 * 109.47233 * 149.99946 * 9 7 5 13 13 N 1.46902 * 109.47123 * 63.89572 * 3 2 1 14 14 C 1.46899 * 110.99771 * 80.81014 * 13 3 2 15 15 C 1.53000 * 109.47392 * 184.79581 * 14 13 3 16 16 O 1.45202 * 109.46979 * 64.99860 * 15 14 13 17 17 C 1.34228 * 116.99778 * 179.97438 * 16 15 14 18 18 O 1.20821 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00079 * 180.02562 * 17 16 15 20 20 C 1.50696 * 109.47345 * 180.02562 * 19 17 16 21 21 C 1.38235 * 119.99642 * 269.72752 * 20 19 17 22 22 C 1.38232 * 119.99905 * 179.76697 * 21 20 19 23 23 C 1.38240 * 119.99988 * 0.50409 * 22 21 20 24 24 C 1.38233 * 119.99718 * 359.75131 * 23 22 21 25 25 C 1.38226 * 120.00372 * 89.99959 * 20 19 17 26 26 H 1.09002 * 109.47148 * 304.86434 * 1 2 3 27 27 H 1.09002 * 109.47327 * 64.87009 * 1 2 3 28 28 H 1.09002 * 109.46748 * 184.86610 * 1 2 3 29 29 H 1.08999 * 109.47047 * 239.99930 * 2 1 3 30 30 H 1.08996 * 109.47352 * 120.00520 * 2 1 3 31 31 H 0.96994 * 120.00726 * 354.16551 * 8 7 5 32 32 H 1.00902 * 110.99829 * 316.86245 * 13 3 2 33 33 H 1.08994 * 109.47396 * 304.79484 * 14 13 3 34 34 H 1.08999 * 109.46755 * 64.79799 * 14 13 3 35 35 H 1.08997 * 109.47614 * 185.00642 * 15 14 13 36 36 H 1.09011 * 109.46885 * 305.00431 * 15 14 13 37 37 H 1.09005 * 109.46754 * 300.00358 * 19 17 16 38 38 H 1.08996 * 109.46838 * 60.00109 * 19 17 16 39 39 H 1.08010 * 120.00129 * 359.97438 * 21 20 19 40 40 H 1.08000 * 120.00177 * 180.22767 * 22 21 20 41 41 H 1.07995 * 119.99748 * 179.72340 * 23 22 21 42 42 H 1.08001 * 120.00058 * 179.97438 * 24 23 22 43 43 H 1.08008 * 120.00215 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1278 1.4432 -0.0699 5 6 1.4603 2.1802 -1.1793 6 1 0.7875 3.0098 -1.0197 7 6 1.7890 1.7961 -2.4621 8 7 2.6948 0.8629 -2.6573 9 14 0.9477 2.6013 -3.9226 10 1 -0.2758 1.8359 -4.2729 11 1 0.5759 3.9958 -3.5728 12 1 1.8740 2.6123 -5.0832 13 7 1.6287 2.1072 1.2437 14 6 2.5284 1.7562 2.3506 15 6 2.0016 2.3687 3.6500 16 8 0.7247 1.7651 3.9867 17 6 0.1241 2.1951 5.1075 18 8 0.6478 3.0478 5.7845 19 6 -1.2035 1.6142 5.5214 20 6 -1.6577 2.2626 6.8037 21 6 -1.3042 1.7102 8.0205 22 6 -1.7168 2.3077 9.1968 23 6 -2.4916 3.4518 9.1561 24 6 -2.8495 4.0012 7.9392 25 6 -2.4325 3.4066 6.7630 26 1 -0.3633 0.5875 0.8432 27 1 -0.3634 0.4364 -0.9304 28 1 -0.3633 -1.0240 0.0872 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.1921 0.5048 -1.9055 32 1 0.6711 1.8863 1.4722 33 1 2.5736 0.6719 2.4523 34 1 3.5262 2.1437 2.1447 35 1 2.7141 2.1839 4.4539 36 1 1.8724 3.4431 3.5189 37 1 -1.9405 1.7993 4.7400 38 1 -1.0982 0.5401 5.6745 39 1 -0.7028 0.8136 8.0523 40 1 -1.4375 1.8782 10.1475 41 1 -2.8177 3.9160 10.0751 42 1 -3.4553 4.8948 7.9074 43 1 -2.7121 3.8360 5.8122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846988938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:45 Heat of formation + Delta-G solvation = -91.443816 kcal Electronic energy + Delta-G solvation = -22642.852955 eV Core-core repulsion = 19265.731693 eV Total energy + Delta-G solvation = -3377.121262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65561 -39.99942 -38.80266 -37.51469 -34.85385 -33.98563 -32.78271 -31.79541 -30.19916 -28.77963 -27.16961 -25.44773 -23.92617 -23.50727 -22.74922 -21.61065 -21.31309 -18.87866 -18.74882 -17.86524 -17.74546 -17.17278 -16.64771 -16.06275 -16.02390 -15.83945 -15.48622 -15.23300 -14.71131 -14.51593 -14.29114 -14.20804 -13.99561 -13.57761 -13.50859 -13.33602 -13.07477 -12.97507 -12.65920 -12.58156 -12.07631 -12.02329 -11.94728 -11.89965 -11.88866 -11.68934 -11.65394 -11.54868 -10.59748 -10.39173 -9.82418 -9.71342 -9.07704 -8.48873 -6.19010 0.32515 0.49909 1.16075 1.56610 1.64244 1.71874 1.81661 2.61307 2.89649 3.26982 3.43805 3.56637 3.86174 3.89380 3.90739 4.13733 4.15262 4.27167 4.27325 4.32382 4.36916 4.40385 4.53539 4.56662 4.62645 4.71791 4.74314 4.74672 4.98193 5.07096 5.13501 5.14095 5.25004 5.42334 5.44538 5.53702 5.55555 5.60644 5.61610 5.96978 6.10013 6.22075 6.54374 6.69648 6.75414 6.80017 7.56117 8.87103 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.002780 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.831334 B =10070.943107 C =10373.224875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.144 4.144 3 C 0.206 3.794 4 H -0.004 1.004 5 C -0.575 4.575 6 H 0.043 0.957 7 C -0.028 4.028 8 N -0.940 5.940 9 Si 1.109 2.891 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.289 1.289 13 N -0.684 5.684 14 C 0.060 3.940 15 C 0.079 3.921 16 O -0.360 6.360 17 C 0.463 3.537 18 O -0.536 6.536 19 C -0.070 4.070 20 C -0.092 4.092 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.258 0.742 32 H 0.339 0.661 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.862 0.375 22.319 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.184 4.184 3 C 0.097 3.903 4 H 0.014 0.986 5 C -0.614 4.614 6 H 0.062 0.938 7 C -0.225 4.225 8 N -0.579 5.579 9 Si 0.933 3.067 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.215 1.215 13 N -0.316 5.316 14 C -0.069 4.069 15 C 0.006 3.994 16 O -0.277 6.277 17 C 0.307 3.693 18 O -0.425 6.425 19 C -0.107 4.107 20 C -0.092 4.092 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.159 0.841 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.462 1.189 20.720 23.242 hybrid contribution 0.544 -0.747 1.613 1.859 sum -9.917 0.442 22.334 24.440 Atomic orbital electron populations 1.21443 0.94987 0.99986 1.01259 1.22057 0.97700 0.99734 0.98889 1.19121 0.93431 0.89645 0.88150 0.98600 1.22104 1.29720 1.17281 0.92273 0.93815 1.26932 0.96671 0.95895 1.03043 1.70867 1.23764 1.28287 1.34967 0.83017 0.75399 0.75537 0.72777 1.20001 1.20151 1.21491 1.60759 1.06269 1.62129 1.02472 1.22048 0.97439 0.98323 0.89091 1.23104 0.82046 0.97784 0.96511 1.86486 1.36240 1.62823 1.42169 1.24224 0.87776 0.79651 0.77616 1.90661 1.66240 1.31793 1.53840 1.20454 0.90455 1.02900 0.96889 1.19466 0.99078 0.96764 0.93915 1.21292 0.99439 1.00722 0.92167 1.21449 0.98177 0.96355 0.98742 1.21525 0.97900 0.96173 0.98676 1.21436 1.00433 1.00551 0.92430 1.21293 0.98022 0.95120 0.99476 0.92781 0.93920 0.92961 0.94229 0.94232 0.93176 0.84108 0.94603 0.89593 0.89602 0.91322 0.84837 0.84357 0.84952 0.83968 0.83869 0.84241 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 9.38 71.98 0.68 -4.08 16 2 C -0.14 -6.46 5.46 30.59 0.17 -6.30 16 3 C 0.21 10.08 1.95 44.17 0.09 10.16 16 4 H 0.00 -0.21 7.31 -2.39 -0.02 -0.23 16 5 C -0.58 -31.54 7.42 25.60 0.19 -31.35 16 6 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 7 C -0.03 -1.54 5.27 84.66 0.45 -1.09 16 8 N -0.94 -55.99 12.88 21.45 0.28 -55.72 16 9 Si 1.11 50.22 29.91 68.60 2.05 52.27 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 13 N -0.68 -28.44 6.25 -495.45 -3.10 -31.54 16 14 C 0.06 2.05 5.93 86.30 0.51 2.56 16 15 C 0.08 2.33 5.79 71.98 0.42 2.75 16 16 O -0.36 -10.19 9.68 -51.40 -0.50 -10.69 16 17 C 0.46 12.02 7.95 71.24 0.57 12.58 16 18 O -0.54 -17.16 15.78 21.98 0.35 -16.81 16 19 C -0.07 -1.24 5.94 29.10 0.17 -1.07 16 20 C -0.09 -1.81 4.37 -19.87 -0.09 -1.89 16 21 C -0.12 -2.14 9.70 22.27 0.22 -1.92 16 22 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 23 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 24 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 25 C -0.12 -2.35 9.70 22.27 0.22 -2.13 16 26 H 0.05 1.95 6.24 -2.39 -0.01 1.94 16 27 H 0.04 1.89 7.30 -2.39 -0.02 1.87 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 2.00 6.27 -2.39 -0.01 1.99 16 30 H 0.04 1.60 7.04 -2.39 -0.02 1.58 16 31 H 0.26 15.48 6.04 -92.71 -0.56 14.92 16 32 H 0.34 13.49 5.95 -89.69 -0.53 12.96 16 33 H 0.04 1.20 7.00 -2.39 -0.02 1.18 16 34 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.09 2.23 8.13 -2.39 -0.02 2.21 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.13 1.90 8.09 -2.38 -0.02 1.88 16 38 H 0.14 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -68.26 354.82 4.00 -64.26 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.67 Total: 25.55 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 4.25 Total: -27.31 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.82 Total: -87.26 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.15 Total: -27.50 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -68.26 4.00 -64.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.186 kcal (2) G-P(sol) polarization free energy of solvation -68.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds