Wall clock time and date at job start Tue Mar 31 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47449 * 2 1 4 4 H 1.09004 * 109.46762 * 305.64485 * 3 2 1 5 5 C 1.50694 * 109.47469 * 185.64405 * 3 2 1 6 6 H 1.07998 * 120.00155 * 239.99534 * 5 3 2 7 7 C 1.37878 * 120.00029 * 59.99735 * 5 3 2 8 8 N 1.31513 * 120.00182 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00226 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47277 * 90.00107 * 9 7 5 11 11 H 1.48498 * 109.47288 * 210.00294 * 9 7 5 12 12 H 1.48504 * 109.47049 * 330.00048 * 9 7 5 13 13 N 1.46902 * 109.47112 * 65.64149 * 3 2 1 14 14 C 1.46903 * 111.00020 * 205.22448 * 13 3 2 15 15 C 1.52999 * 109.46922 * 185.20255 * 14 13 3 16 16 O 1.45201 * 109.47196 * 64.99903 * 15 14 13 17 17 C 1.34230 * 116.99493 * 179.97438 * 16 15 14 18 18 O 1.20819 * 120.00337 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99617 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47438 * 180.02562 * 19 17 16 21 21 C 1.38237 * 119.99732 * 269.73102 * 20 19 17 22 22 C 1.38237 * 119.99841 * 179.76399 * 21 20 19 23 23 C 1.38238 * 119.99982 * 0.50153 * 22 21 20 24 24 C 1.38242 * 119.99841 * 359.74978 * 23 22 21 25 25 C 1.38230 * 120.00041 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.47064 * 294.41076 * 1 2 3 27 27 H 1.08999 * 109.47388 * 54.41087 * 1 2 3 28 28 H 1.09001 * 109.47602 * 174.41657 * 1 2 3 29 29 H 1.09005 * 109.47490 * 239.99986 * 2 1 3 30 30 H 1.09001 * 109.47788 * 119.99983 * 2 1 3 31 31 H 0.96994 * 120.00455 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99675 * 329.17389 * 13 3 2 33 33 H 1.09003 * 109.47189 * 305.19983 * 14 13 3 34 34 H 1.08999 * 109.47280 * 65.19927 * 14 13 3 35 35 H 1.09001 * 109.46602 * 185.00096 * 15 14 13 36 36 H 1.09003 * 109.46918 * 304.99651 * 15 14 13 37 37 H 1.09007 * 109.47311 * 300.00018 * 19 17 16 38 38 H 1.09004 * 109.47257 * 59.99602 * 19 17 16 39 39 H 1.07998 * 119.99980 * 359.97438 * 21 20 19 40 40 H 1.07995 * 120.00096 * 180.22591 * 22 21 20 41 41 H 1.07994 * 120.00038 * 179.72268 * 23 22 21 42 42 H 1.07995 * 120.00033 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99936 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5404 1.4448 -0.1397 6 1 4.1539 1.8865 0.6315 7 6 4.1301 0.8830 -1.2523 8 7 3.3830 0.3456 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5465 -0.3472 -0.8148 11 1 6.3528 0.9330 -2.8651 12 1 6.5494 2.0765 -0.7357 13 7 1.6647 2.0946 1.2617 14 6 1.5790 3.5517 1.0961 15 6 1.3147 4.2047 2.4543 16 8 2.4535 3.9836 3.3274 17 6 2.3808 4.4971 4.5655 18 8 1.3980 5.1105 4.9084 19 6 3.5246 4.3075 5.5282 20 6 3.1943 4.9745 6.8385 21 6 3.5457 6.2946 7.0500 22 6 3.2383 6.9079 8.2501 23 6 2.5888 6.1981 9.2427 24 6 2.2420 4.8764 9.0331 25 6 2.5443 4.2648 7.8309 26 1 -0.3633 0.4247 0.9358 27 1 -0.3634 0.5981 -0.8357 28 1 -0.3634 -1.0228 -0.1000 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7978 -0.0493 -2.9746 32 1 0.7986 1.7197 1.6188 33 1 2.5180 3.9270 0.6891 34 1 0.7648 3.7925 0.4125 35 1 1.1628 5.2756 2.3191 36 1 0.4231 3.7649 2.9014 37 1 3.6873 3.2425 5.6939 38 1 4.4281 4.7524 5.1112 39 1 4.0573 6.8478 6.2763 40 1 3.5096 7.9403 8.4140 41 1 2.3527 6.6759 10.1820 42 1 1.7349 4.3216 9.8087 43 1 2.2737 3.2321 7.6673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846988939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:49 Heat of formation + Delta-G solvation = -70.482387 kcal Electronic energy + Delta-G solvation = -22499.064689 eV Core-core repulsion = 19122.852383 eV Total energy + Delta-G solvation = -3376.212306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39771 -39.11112 -36.81006 -35.85029 -33.15794 -32.69594 -31.38015 -31.04996 -28.79329 -27.68205 -25.96921 -23.03970 -22.74858 -22.41316 -21.26716 -20.43015 -19.56231 -17.55476 -17.00786 -16.42943 -16.25435 -16.01140 -15.26710 -15.24512 -14.77366 -14.33053 -14.02668 -13.58069 -13.36758 -13.20426 -13.07719 -12.83356 -12.59143 -12.37904 -12.23396 -11.88279 -11.58414 -11.30921 -11.24526 -11.16162 -10.92458 -10.78028 -10.58319 -10.32255 -10.26612 -9.94606 -9.68739 -9.58134 -9.07887 -9.05908 -8.91616 -8.33159 -7.23513 -5.95353 -3.99095 1.13343 1.26479 2.40004 2.94449 3.33903 3.40249 3.44423 3.71541 4.46197 4.46437 4.66147 4.83704 4.94070 5.02392 5.07530 5.12101 5.32168 5.34129 5.36704 5.42412 5.48144 5.53039 5.79947 5.87976 5.89750 6.09650 6.14825 6.16347 6.28223 6.34520 6.39846 6.41943 6.48032 6.75237 6.83674 6.84868 7.06742 7.18114 7.46982 7.77816 7.93680 7.99924 8.27877 8.39660 8.75049 9.09740 9.65837 11.10171 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.003061 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.419758 B = 9145.523915 C = 9883.345201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.064 3.936 15 C 0.077 3.923 16 O -0.329 6.329 17 C 0.459 3.541 18 O -0.515 6.515 19 C -0.078 4.078 20 C -0.071 4.071 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.103 4.103 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.259 0.741 32 H 0.315 0.685 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 9.180 17.470 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.312 5.312 14 C -0.066 4.066 15 C 0.003 3.997 16 O -0.244 6.244 17 C 0.302 3.698 18 O -0.404 6.404 19 C -0.115 4.115 20 C -0.071 4.071 21 C -0.122 4.122 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.586 9.282 17.571 19.935 hybrid contribution -0.070 0.079 -0.749 0.756 sum -1.656 9.361 16.823 19.323 Atomic orbital electron populations 1.21884 0.99646 0.99752 0.99481 1.21767 0.91179 1.00340 1.03130 1.19172 0.95640 0.90012 0.84055 0.98120 1.21232 0.91232 1.36315 1.04177 0.91837 1.24969 0.98110 0.95709 0.95867 1.69870 1.34673 1.39688 1.09599 0.86540 0.85808 0.78420 0.76869 1.20790 1.21524 1.19940 1.60677 1.35955 1.01447 1.33152 1.21925 1.01851 0.91124 0.91668 1.23212 0.86575 0.99803 0.90144 1.86667 1.44641 1.70161 1.22952 1.23499 0.88143 0.75819 0.82378 1.90650 1.33176 1.38891 1.77657 1.20316 0.96506 1.04305 0.90366 1.19344 0.99158 0.94430 0.94179 1.21032 0.99772 0.94012 0.97390 1.21101 0.99256 0.99808 0.93743 1.21153 0.98906 0.94680 0.99148 1.21111 1.00210 0.95226 0.97309 1.21051 0.97608 1.00095 0.93325 0.94667 0.93904 0.94362 0.88206 0.93996 0.93128 0.86777 0.89446 0.94290 0.91706 0.91932 0.86517 0.86744 0.86047 0.86060 0.86201 0.86020 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.65 37.15 0.36 -2.51 16 2 C -0.13 -2.93 5.36 -26.73 -0.14 -3.07 16 3 C 0.22 5.34 2.02 -68.86 -0.14 5.20 16 4 H 0.00 0.03 7.85 -51.93 -0.41 -0.38 16 5 C -0.49 -13.38 8.55 -34.44 -0.29 -13.68 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.36 11.29 55.43 0.63 -24.73 16 9 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.21 6.22 -107.95 -0.67 -14.88 16 14 C 0.06 1.18 5.85 -3.82 -0.02 1.15 16 15 C 0.08 1.23 5.78 37.16 0.21 1.44 16 16 O -0.33 -5.53 10.17 -39.26 -0.40 -5.93 16 17 C 0.46 6.87 7.95 36.01 0.29 7.15 16 18 O -0.51 -8.85 15.78 -18.74 -0.30 -9.15 16 19 C -0.08 -0.87 5.94 -29.04 -0.17 -1.04 16 20 C -0.07 -0.81 4.37 -104.62 -0.46 -1.27 16 21 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 26 H 0.03 0.60 6.65 -51.93 -0.35 0.25 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.32 6.02 6.65 -39.29 -0.26 5.76 16 33 H 0.09 1.75 7.92 -51.93 -0.41 1.34 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 36 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 37 H 0.12 1.15 8.09 -51.92 -0.42 0.73 16 38 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -31.08 361.07 -9.51 -40.60 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.77 Total: 5.21 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.43 Total: -12.89 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.05 Total: -39.61 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.70 Total: -15.07 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.08 -9.51 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.885 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds