Wall clock time and date at job start Tue Mar 31 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47449 * 2 1 4 4 H 1.09004 * 109.46762 * 305.64485 * 3 2 1 5 5 C 1.50694 * 109.47469 * 185.64405 * 3 2 1 6 6 H 1.07998 * 120.00155 * 239.99534 * 5 3 2 7 7 C 1.37878 * 120.00029 * 59.99735 * 5 3 2 8 8 N 1.31513 * 120.00182 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00226 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47277 * 90.00107 * 9 7 5 11 11 H 1.48498 * 109.47288 * 210.00294 * 9 7 5 12 12 H 1.48504 * 109.47049 * 330.00048 * 9 7 5 13 13 N 1.46902 * 109.47112 * 65.64149 * 3 2 1 14 14 C 1.46903 * 111.00020 * 205.22448 * 13 3 2 15 15 C 1.52999 * 109.46922 * 185.20255 * 14 13 3 16 16 O 1.45201 * 109.47196 * 64.99903 * 15 14 13 17 17 C 1.34230 * 116.99493 * 179.97438 * 16 15 14 18 18 O 1.20819 * 120.00337 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99617 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47438 * 180.02562 * 19 17 16 21 21 C 1.38237 * 119.99732 * 269.73102 * 20 19 17 22 22 C 1.38237 * 119.99841 * 179.76399 * 21 20 19 23 23 C 1.38238 * 119.99982 * 0.50153 * 22 21 20 24 24 C 1.38242 * 119.99841 * 359.74978 * 23 22 21 25 25 C 1.38230 * 120.00041 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.47064 * 294.41076 * 1 2 3 27 27 H 1.08999 * 109.47388 * 54.41087 * 1 2 3 28 28 H 1.09001 * 109.47602 * 174.41657 * 1 2 3 29 29 H 1.09005 * 109.47490 * 239.99986 * 2 1 3 30 30 H 1.09001 * 109.47788 * 119.99983 * 2 1 3 31 31 H 0.96994 * 120.00455 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99675 * 329.17389 * 13 3 2 33 33 H 1.09003 * 109.47189 * 305.19983 * 14 13 3 34 34 H 1.08999 * 109.47280 * 65.19927 * 14 13 3 35 35 H 1.09001 * 109.46602 * 185.00096 * 15 14 13 36 36 H 1.09003 * 109.46918 * 304.99651 * 15 14 13 37 37 H 1.09007 * 109.47311 * 300.00018 * 19 17 16 38 38 H 1.09004 * 109.47257 * 59.99602 * 19 17 16 39 39 H 1.07998 * 119.99980 * 359.97438 * 21 20 19 40 40 H 1.07995 * 120.00096 * 180.22591 * 22 21 20 41 41 H 1.07994 * 120.00038 * 179.72268 * 23 22 21 42 42 H 1.07995 * 120.00033 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99936 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5404 1.4448 -0.1397 6 1 4.1539 1.8865 0.6315 7 6 4.1301 0.8830 -1.2523 8 7 3.3830 0.3456 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5465 -0.3472 -0.8148 11 1 6.3528 0.9330 -2.8651 12 1 6.5494 2.0765 -0.7357 13 7 1.6647 2.0946 1.2617 14 6 1.5790 3.5517 1.0961 15 6 1.3147 4.2047 2.4543 16 8 2.4535 3.9836 3.3274 17 6 2.3808 4.4971 4.5655 18 8 1.3980 5.1105 4.9084 19 6 3.5246 4.3075 5.5282 20 6 3.1943 4.9745 6.8385 21 6 3.5457 6.2946 7.0500 22 6 3.2383 6.9079 8.2501 23 6 2.5888 6.1981 9.2427 24 6 2.2420 4.8764 9.0331 25 6 2.5443 4.2648 7.8309 26 1 -0.3633 0.4247 0.9358 27 1 -0.3634 0.5981 -0.8357 28 1 -0.3634 -1.0228 -0.1000 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7978 -0.0493 -2.9746 32 1 0.7986 1.7197 1.6188 33 1 2.5180 3.9270 0.6891 34 1 0.7648 3.7925 0.4125 35 1 1.1628 5.2756 2.3191 36 1 0.4231 3.7649 2.9014 37 1 3.6873 3.2425 5.6939 38 1 4.4281 4.7524 5.1112 39 1 4.0573 6.8478 6.2763 40 1 3.5096 7.9403 8.4140 41 1 2.3527 6.6759 10.1820 42 1 1.7349 4.3216 9.8087 43 1 2.2737 3.2321 7.6673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846988939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:48 Heat of formation + Delta-G solvation = -87.401309 kcal Electronic energy + Delta-G solvation = -22499.798349 eV Core-core repulsion = 19122.852383 eV Total energy + Delta-G solvation = -3376.945966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54357 -39.94474 -38.38593 -37.31262 -34.61928 -33.94457 -33.15329 -31.77357 -30.18813 -28.82718 -27.77369 -24.75688 -23.60223 -23.48009 -22.56261 -21.47067 -21.43384 -18.77398 -18.30483 -17.81744 -17.63208 -17.16129 -16.74793 -16.11034 -16.08968 -15.78263 -15.66549 -14.80362 -14.62589 -14.32284 -14.24750 -14.06860 -13.94121 -13.64595 -13.35575 -13.19311 -13.12857 -12.93597 -12.74336 -12.52990 -12.35015 -12.03539 -11.94646 -11.87566 -11.62606 -11.55980 -11.49732 -11.31245 -11.01304 -10.40053 -9.80211 -9.68557 -8.99016 -8.03935 -6.15307 0.35976 0.52116 1.24011 1.44003 1.45005 1.55282 1.85177 2.46917 2.92917 3.21151 3.55552 3.62323 3.91259 3.92792 4.05099 4.16159 4.17211 4.29409 4.34880 4.49824 4.51185 4.57654 4.58223 4.65226 4.68128 4.72541 4.76856 4.96257 5.09596 5.11593 5.16518 5.24823 5.38570 5.54911 5.55931 5.61349 5.62513 5.65052 5.77674 5.91470 6.12392 6.37704 6.50190 6.81306 6.97709 7.00547 7.53574 8.99274 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.003061 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.419758 B = 9145.523915 C = 9883.345201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.224 3.776 4 H -0.028 1.028 5 C -0.508 4.508 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.683 5.683 14 C 0.068 3.932 15 C 0.083 3.917 16 O -0.347 6.347 17 C 0.460 3.540 18 O -0.539 6.539 19 C -0.072 4.072 20 C -0.090 4.090 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.121 4.121 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.259 0.741 32 H 0.327 0.673 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 9.719 19.056 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.116 3.884 4 H -0.011 1.011 5 C -0.547 4.547 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.562 5.562 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.315 5.315 14 C -0.062 4.062 15 C 0.009 3.991 16 O -0.263 6.263 17 C 0.305 3.695 18 O -0.430 6.430 19 C -0.109 4.109 20 C -0.090 4.090 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.139 4.139 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.560 9.827 19.174 21.602 hybrid contribution -0.105 -0.046 -1.188 1.194 sum -1.665 9.781 17.985 20.540 Atomic orbital electron populations 1.21752 0.96266 1.01144 1.00519 1.21594 0.94222 0.98982 1.01207 1.18946 0.94172 0.90702 0.84542 1.01056 1.21478 0.92827 1.36342 1.04038 0.93102 1.25676 1.02211 0.95424 0.95626 1.69996 1.36185 1.40119 1.09895 0.85604 0.80924 0.78509 0.76859 1.20278 1.21136 1.19528 1.60539 1.36902 1.02878 1.31225 1.21886 1.01212 0.89586 0.93515 1.23098 0.86674 1.00492 0.88846 1.86665 1.44977 1.70704 1.23950 1.24167 0.88696 0.74767 0.81880 1.90630 1.34416 1.40038 1.77870 1.20418 0.95551 1.05378 0.89572 1.19463 1.00183 0.95020 0.94297 1.21284 1.00187 0.94032 0.98299 1.21442 0.98896 1.00928 0.93415 1.21524 0.98097 0.94595 1.00059 1.21436 1.00068 0.95777 0.97418 1.21283 0.98011 1.00638 0.93946 0.92374 0.94352 0.92515 0.91379 0.94544 0.93145 0.85452 0.91740 0.92939 0.90093 0.91170 0.85213 0.84970 0.85215 0.83969 0.83744 0.84060 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.65 71.98 0.69 -4.44 16 2 C -0.12 -5.68 5.36 30.59 0.16 -5.51 16 3 C 0.22 11.13 2.02 44.17 0.09 11.21 16 4 H -0.03 -1.53 7.85 -2.38 -0.02 -1.55 16 5 C -0.51 -28.15 8.55 25.60 0.22 -27.93 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.47 5.29 84.66 0.45 0.92 16 8 N -0.92 -52.82 11.29 21.45 0.24 -52.57 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.68 -28.31 6.22 -495.43 -3.08 -31.40 16 14 C 0.07 2.46 5.85 86.30 0.50 2.96 16 15 C 0.08 2.57 5.78 71.98 0.42 2.98 16 16 O -0.35 -11.43 10.17 -51.42 -0.52 -11.95 16 17 C 0.46 13.41 7.95 71.24 0.57 13.98 16 18 O -0.54 -18.14 15.78 21.99 0.35 -17.80 16 19 C -0.07 -1.55 5.94 29.10 0.17 -1.38 16 20 C -0.09 -1.96 4.37 -19.87 -0.09 -2.05 16 21 C -0.12 -2.43 9.70 22.27 0.22 -2.21 16 22 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 25 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 26 H 0.06 1.86 6.65 -2.38 -0.02 1.84 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 3.64 5.94 -2.38 -0.01 3.62 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.33 12.10 6.65 -89.69 -0.60 11.51 16 33 H 0.06 2.63 7.92 -2.39 -0.02 2.61 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.25 8.13 -2.39 -0.02 2.23 16 36 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 37 H 0.13 2.41 8.09 -2.38 -0.02 2.39 16 38 H 0.13 2.32 8.08 -2.38 -0.02 2.30 16 39 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -66.89 361.07 3.69 -63.20 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.39 Total: 24.15 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 4.29 Total: -19.69 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.84 Total: -83.97 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.18 Total: -29.75 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.89 3.69 -63.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.204 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds