Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 N 1.46507 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00249 * 89.99753 * 4 3 2 6 6 O 1.21592 * 120.00224 * 356.12391 * 5 4 3 7 7 C 1.47537 * 119.99978 * 176.12696 * 5 4 3 8 8 C 1.39668 * 120.19596 * 54.99021 * 7 5 4 9 9 C 1.37830 * 119.91560 * 179.97438 * 8 7 5 10 10 C 1.38570 * 120.32609 * 0.02625 * 9 8 7 11 11 C 1.38025 * 120.40202 * 359.97438 * 10 9 8 12 12 C 1.38834 * 120.07036 * 359.96020 * 11 10 9 13 13 O 1.35524 * 120.16339 * 180.02562 * 12 11 10 14 14 C 1.34817 * 116.99620 * 354.02809 * 13 12 11 15 15 H 1.08001 * 120.00192 * 5.04711 * 14 13 12 16 16 C 1.38703 * 119.99897 * 185.04733 * 14 13 12 17 17 N 1.31519 * 119.99945 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99935 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47276 * 59.99600 * 18 16 14 20 20 H 1.48495 * 109.46933 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46870 * 299.99911 * 18 16 14 22 22 C 1.46502 * 119.99646 * 270.00110 * 4 3 2 23 23 C 1.53000 * 109.47149 * 305.54553 * 22 4 3 24 24 C 1.53002 * 109.47155 * 65.54167 * 22 4 3 25 25 H 1.09007 * 109.46624 * 299.99943 * 1 2 3 26 26 H 1.09003 * 109.47169 * 59.99400 * 1 2 3 27 27 H 1.08994 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47195 * 240.00531 * 2 1 3 29 29 H 1.08998 * 109.47204 * 120.00093 * 2 1 3 30 30 H 1.08999 * 109.47585 * 60.00240 * 3 2 1 31 31 H 1.09003 * 109.47644 * 300.00309 * 3 2 1 32 32 H 1.07997 * 120.03911 * 0.27929 * 8 7 5 33 33 H 1.08002 * 119.83325 * 180.02562 * 9 8 7 34 34 H 1.07996 * 119.80179 * 179.97438 * 10 9 8 35 35 H 1.07997 * 119.96785 * 179.97438 * 11 10 9 36 36 H 0.96993 * 119.99799 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.47242 * 185.53818 * 22 4 3 38 38 H 1.08997 * 109.47180 * 59.99766 * 23 22 4 39 39 H 1.09004 * 109.46991 * 180.02562 * 23 22 4 40 40 H 1.09001 * 109.47014 * 299.99534 * 23 22 4 41 41 H 1.09000 * 109.47043 * 59.99835 * 24 22 4 42 42 H 1.09004 * 109.47063 * 179.97438 * 24 22 4 43 43 H 1.08997 * 109.47201 * 300.00251 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.4427 -1.1680 6 8 3.5722 1.3716 -2.2197 7 6 5.6513 1.5291 -1.1700 8 6 6.4100 0.6071 -0.4455 9 6 7.7856 0.6929 -0.4519 10 6 8.4211 1.6905 -1.1737 11 6 7.6844 2.6087 -1.8943 12 6 6.2979 2.5369 -1.9006 13 8 5.5727 3.4371 -2.6079 14 6 6.2492 4.4512 -3.1835 15 1 7.3281 4.4747 -3.1390 16 6 5.5598 5.4645 -3.8330 17 7 4.2460 5.4357 -3.8876 18 14 6.4973 6.8693 -4.6311 19 1 7.4063 6.3287 -5.6735 20 1 5.5364 7.8150 -5.2536 21 1 7.2943 7.5813 -3.6002 22 6 4.2380 1.4424 1.2679 23 6 3.7670 2.6159 2.1292 24 6 3.9761 0.1292 2.0081 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.9196 -0.1750 0.1149 33 1 8.3711 -0.0211 0.1085 34 1 9.4995 1.7501 -1.1724 35 1 8.1869 3.3836 -2.4540 36 1 3.7639 6.1441 -4.3421 37 1 5.3054 1.5417 1.0707 38 1 2.6996 2.5166 2.3263 39 1 4.3127 2.6160 3.0728 40 1 3.9536 3.5515 1.6019 41 1 4.3116 -0.7069 1.3944 42 1 4.5218 0.1289 2.9516 43 1 2.9087 0.0298 2.2052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847174209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -40.043410 kcal Electronic energy + Delta-G solvation = -24257.809456 eV Core-core repulsion = 20882.917083 eV Total energy + Delta-G solvation = -3374.892373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00543 -38.50389 -36.39398 -36.22351 -33.74830 -32.35686 -31.04966 -30.42280 -28.96634 -27.18002 -26.27545 -25.35887 -23.00714 -21.72966 -21.33760 -21.03778 -18.85306 -18.06360 -17.37940 -16.40533 -15.62603 -14.96811 -14.84557 -14.56001 -14.21801 -14.06787 -13.99465 -13.68047 -13.59419 -13.12907 -13.00851 -12.69212 -12.52832 -12.39597 -11.99613 -11.92714 -11.73826 -11.46199 -11.37263 -11.28567 -11.06807 -11.01087 -10.92711 -10.79114 -10.53565 -10.48284 -10.27866 -9.60117 -8.96859 -8.88596 -8.23113 -8.14663 -7.33262 -6.47189 -4.07418 1.83627 2.28659 3.11042 3.12686 3.15493 3.42868 3.58248 3.92620 4.48163 4.93136 5.03391 5.06479 5.12194 5.14132 5.23577 5.31293 5.41007 5.49631 5.53720 5.60738 5.66794 5.73412 5.77882 5.81401 5.95925 5.98671 6.01458 6.03173 6.13835 6.17164 6.23258 6.34864 6.40617 6.51903 6.56752 6.66576 6.94412 7.03692 7.10103 7.24881 7.28926 7.67581 7.90707 8.00779 8.94155 8.97637 9.63711 10.68452 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.005662 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.715461 B = 4943.725952 C = 6079.779741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.117 3.883 4 N -0.610 5.610 5 C 0.578 3.422 6 O -0.521 6.521 7 C -0.215 4.215 8 C -0.046 4.046 9 C -0.223 4.223 10 C -0.056 4.056 11 C -0.234 4.234 12 C 0.187 3.813 13 O -0.150 6.150 14 C -0.400 4.400 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.846 5.846 18 Si 0.942 3.058 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.269 1.269 22 C 0.121 3.879 23 C -0.162 4.162 24 C -0.164 4.164 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.272 0.728 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -7.504 12.181 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C -0.006 4.006 4 N -0.344 5.344 5 C 0.367 3.633 6 O -0.395 6.395 7 C -0.219 4.219 8 C -0.065 4.065 9 C -0.242 4.242 10 C -0.075 4.075 11 C -0.253 4.253 12 C 0.129 3.871 13 O -0.050 6.050 14 C -0.475 4.475 15 H 0.111 0.889 16 C -0.163 4.163 17 N -0.478 5.478 18 Si 0.766 3.234 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.194 1.194 22 C 0.017 3.983 23 C -0.220 4.220 24 C -0.222 4.222 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.787 -7.333 11.415 13.590 hybrid contribution 0.579 0.696 -0.345 0.969 sum -0.208 -6.637 11.070 12.909 Atomic orbital electron populations 1.21691 0.95694 1.01391 1.01807 1.22062 0.95683 0.97946 1.02531 1.21380 0.79954 0.96377 1.02873 1.47900 1.05823 1.75051 1.05613 1.18198 0.87182 0.75000 0.82874 1.90771 1.69830 1.47945 1.30994 1.18761 0.92264 1.02597 1.08294 1.20750 0.93775 0.96238 0.95707 1.20478 0.93912 1.02561 1.07292 1.20877 0.98656 0.93464 0.94481 1.21131 0.93315 1.03833 1.07018 1.19195 0.90038 0.89376 0.88488 1.84018 1.34701 1.31647 1.54656 1.21363 0.91883 0.99822 1.34475 0.88892 1.25356 0.95832 0.98166 0.96949 1.70064 1.06204 1.32707 1.38866 0.85773 0.78761 0.79539 0.79314 1.19348 1.20183 1.19400 1.21316 0.98627 0.94642 0.83689 1.22152 1.01335 0.98908 0.99652 1.22330 1.02161 0.97551 1.00188 0.92956 0.92465 0.92899 0.91596 0.91664 0.91036 0.90006 0.86648 0.87168 0.87152 0.85070 0.91795 0.87658 0.92503 0.91772 0.91826 0.92398 0.91825 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.14 -1.93 6.00 -26.73 -0.16 -2.09 16 3 C 0.12 1.85 4.94 -4.04 -0.02 1.83 16 4 N -0.61 -10.78 2.40 -167.32 -0.40 -11.18 16 5 C 0.58 13.09 6.81 -12.47 -0.08 13.00 16 6 O -0.52 -14.09 16.41 3.14 0.05 -14.04 16 7 C -0.21 -4.72 4.84 -104.81 -0.51 -5.23 16 8 C -0.05 -0.81 7.40 -39.20 -0.29 -1.10 16 9 C -0.22 -3.66 10.02 -39.61 -0.40 -4.06 16 10 C -0.06 -0.99 10.03 -39.54 -0.40 -1.39 16 11 C -0.23 -5.01 9.16 -39.44 -0.36 -5.37 16 12 C 0.19 4.63 6.65 -38.60 -0.26 4.38 16 13 O -0.15 -4.42 8.98 -1.36 -0.01 -4.43 16 14 C -0.40 -11.28 9.49 30.90 0.29 -10.98 16 15 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 16 C 0.04 1.21 5.49 -17.51 -0.10 1.11 16 17 N -0.85 -25.37 13.67 55.48 0.76 -24.61 16 18 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 22 C 0.12 1.71 2.51 -67.93 -0.17 1.54 16 23 C -0.16 -2.05 9.06 37.16 0.34 -1.72 16 24 C -0.16 -1.79 8.25 37.16 0.31 -1.48 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.77 5.42 -51.93 -0.28 0.49 16 30 H 0.07 0.95 6.15 -51.93 -0.32 0.63 16 31 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 32 H 0.12 1.72 6.36 -52.49 -0.33 1.39 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.11 1.61 4.63 -51.93 -0.24 1.37 16 38 H 0.06 0.65 6.51 -51.93 -0.34 0.31 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.65 7.25 -51.93 -0.38 0.27 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.63 5.99 -51.93 -0.31 0.32 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -33.61 344.97 -6.96 -40.57 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.10 Total: 5.85 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.44 Total: -12.86 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.36 Total: -35.79 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.04 Total: -18.47 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.61 -6.96 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847174209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.529 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds