Wall clock time and date at job start Tue Mar 31 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 N 1.46507 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00249 * 89.99753 * 4 3 2 6 6 O 1.21592 * 120.00224 * 356.12391 * 5 4 3 7 7 C 1.47537 * 119.99978 * 176.12696 * 5 4 3 8 8 C 1.39668 * 120.19596 * 54.99021 * 7 5 4 9 9 C 1.37830 * 119.91560 * 179.97438 * 8 7 5 10 10 C 1.38570 * 120.32609 * 0.02625 * 9 8 7 11 11 C 1.38025 * 120.40202 * 359.97438 * 10 9 8 12 12 C 1.38834 * 120.07036 * 359.96020 * 11 10 9 13 13 O 1.35524 * 120.16339 * 180.02562 * 12 11 10 14 14 C 1.34817 * 116.99620 * 354.02809 * 13 12 11 15 15 H 1.08001 * 120.00192 * 5.04711 * 14 13 12 16 16 C 1.38703 * 119.99897 * 185.04733 * 14 13 12 17 17 N 1.31519 * 119.99945 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99935 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47276 * 59.99600 * 18 16 14 20 20 H 1.48495 * 109.46933 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46870 * 299.99911 * 18 16 14 22 22 C 1.46502 * 119.99646 * 270.00110 * 4 3 2 23 23 C 1.53000 * 109.47149 * 305.54553 * 22 4 3 24 24 C 1.53002 * 109.47155 * 65.54167 * 22 4 3 25 25 H 1.09007 * 109.46624 * 299.99943 * 1 2 3 26 26 H 1.09003 * 109.47169 * 59.99400 * 1 2 3 27 27 H 1.08994 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47195 * 240.00531 * 2 1 3 29 29 H 1.08998 * 109.47204 * 120.00093 * 2 1 3 30 30 H 1.08999 * 109.47585 * 60.00240 * 3 2 1 31 31 H 1.09003 * 109.47644 * 300.00309 * 3 2 1 32 32 H 1.07997 * 120.03911 * 0.27929 * 8 7 5 33 33 H 1.08002 * 119.83325 * 180.02562 * 9 8 7 34 34 H 1.07996 * 119.80179 * 179.97438 * 10 9 8 35 35 H 1.07997 * 119.96785 * 179.97438 * 11 10 9 36 36 H 0.96993 * 119.99799 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.47242 * 185.53818 * 22 4 3 38 38 H 1.08997 * 109.47180 * 59.99766 * 23 22 4 39 39 H 1.09004 * 109.46991 * 180.02562 * 23 22 4 40 40 H 1.09001 * 109.47014 * 299.99534 * 23 22 4 41 41 H 1.09000 * 109.47043 * 59.99835 * 24 22 4 42 42 H 1.09004 * 109.47063 * 179.97438 * 24 22 4 43 43 H 1.08997 * 109.47201 * 300.00251 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.4427 -1.1680 6 8 3.5722 1.3716 -2.2197 7 6 5.6513 1.5291 -1.1700 8 6 6.4100 0.6071 -0.4455 9 6 7.7856 0.6929 -0.4519 10 6 8.4211 1.6905 -1.1737 11 6 7.6844 2.6087 -1.8943 12 6 6.2979 2.5369 -1.9006 13 8 5.5727 3.4371 -2.6079 14 6 6.2492 4.4512 -3.1835 15 1 7.3281 4.4747 -3.1390 16 6 5.5598 5.4645 -3.8330 17 7 4.2460 5.4357 -3.8876 18 14 6.4973 6.8693 -4.6311 19 1 7.4063 6.3287 -5.6735 20 1 5.5364 7.8150 -5.2536 21 1 7.2943 7.5813 -3.6002 22 6 4.2380 1.4424 1.2679 23 6 3.7670 2.6159 2.1292 24 6 3.9761 0.1292 2.0081 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.9196 -0.1750 0.1149 33 1 8.3711 -0.0211 0.1085 34 1 9.4995 1.7501 -1.1724 35 1 8.1869 3.3836 -2.4540 36 1 3.7639 6.1441 -4.3421 37 1 5.3054 1.5417 1.0707 38 1 2.6996 2.5166 2.3263 39 1 4.3127 2.6160 3.0728 40 1 3.9536 3.5515 1.6019 41 1 4.3116 -0.7069 1.3944 42 1 4.5218 0.1289 2.9516 43 1 2.9087 0.0298 2.2052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847174209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:08 Heat of formation + Delta-G solvation = -61.969146 kcal Electronic energy + Delta-G solvation = -24258.760227 eV Core-core repulsion = 20882.917083 eV Total energy + Delta-G solvation = -3375.843144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.61550 -40.18714 -38.10373 -37.78454 -34.88239 -34.36106 -32.47915 -31.84495 -30.62135 -28.16263 -27.68849 -27.20463 -24.51583 -23.29512 -22.61722 -22.39073 -20.33359 -19.92627 -18.91761 -18.12741 -17.14632 -16.63040 -16.46302 -16.01601 -15.75917 -15.47334 -15.40778 -15.33596 -14.95043 -14.54786 -14.46642 -14.04932 -13.93419 -13.58003 -13.53957 -13.21158 -12.99412 -12.91133 -12.70307 -12.54852 -12.44710 -12.42048 -12.35360 -12.17008 -12.03734 -11.74025 -11.46159 -11.40662 -10.84742 -10.70507 -9.78470 -9.61028 -9.06949 -8.49299 -6.20016 0.24647 0.68295 1.30993 1.43682 1.48951 1.77473 2.12221 2.14376 2.79313 3.12763 3.39439 3.64572 3.88446 4.01438 4.05603 4.08434 4.24589 4.25466 4.33202 4.42057 4.48025 4.52395 4.60564 4.68224 4.76969 4.82227 4.90394 4.95270 4.98655 5.04184 5.06372 5.09446 5.12911 5.22541 5.23245 5.39013 5.47216 5.49541 5.57873 5.68187 5.75300 5.93904 6.14526 6.46607 6.91996 7.30180 7.74161 8.72665 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.005662 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.715461 B = 4943.725952 C = 6079.779741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.112 3.888 4 N -0.600 5.600 5 C 0.565 3.435 6 O -0.587 6.587 7 C -0.230 4.230 8 C -0.039 4.039 9 C -0.190 4.190 10 C -0.046 4.046 11 C -0.248 4.248 12 C 0.143 3.857 13 O -0.215 6.215 14 C -0.421 4.421 15 H 0.108 0.892 16 C -0.024 4.024 17 N -0.916 5.916 18 Si 1.023 2.977 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.251 1.251 22 C 0.111 3.889 23 C -0.159 4.159 24 C -0.156 4.156 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.125 0.875 36 H 0.272 0.728 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.027 0.973 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -9.678 15.944 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.010 4.010 4 N -0.332 5.332 5 C 0.355 3.645 6 O -0.467 6.467 7 C -0.234 4.234 8 C -0.057 4.057 9 C -0.208 4.208 10 C -0.064 4.064 11 C -0.267 4.267 12 C 0.090 3.910 13 O -0.120 6.120 14 C -0.497 4.497 15 H 0.125 0.875 16 C -0.222 4.222 17 N -0.553 5.553 18 Si 0.841 3.159 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.175 1.175 22 C 0.009 3.991 23 C -0.217 4.217 24 C -0.214 4.214 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.055 0.945 32 H 0.168 0.832 33 H 0.183 0.817 34 H 0.174 0.826 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.822 -9.562 15.280 18.117 hybrid contribution -0.082 1.060 -1.213 1.613 sum 1.740 -8.502 14.067 16.529 Atomic orbital electron populations 1.21683 0.93794 1.02682 1.02073 1.21969 0.97274 0.95611 1.02217 1.21540 0.79076 0.98276 1.02091 1.48033 1.06672 1.72797 1.05709 1.18593 0.87921 0.74601 0.83399 1.90723 1.71038 1.51360 1.33605 1.19145 0.92453 1.03004 1.08811 1.21184 0.94573 0.95424 0.94560 1.21167 0.93435 1.01601 1.04611 1.21402 1.00784 0.91863 0.92385 1.21292 0.92134 1.05175 1.08145 1.19916 0.91826 0.89818 0.89441 1.84007 1.36495 1.33584 1.57884 1.21926 0.92740 1.00283 1.34730 0.87487 1.26756 0.96792 1.01163 0.97475 1.70257 1.08614 1.34458 1.41967 0.84601 0.77316 0.75382 0.78565 1.17983 1.19832 1.17513 1.21671 0.97596 0.97566 0.82287 1.22146 1.02832 0.96458 1.00246 1.22276 1.03469 0.94741 1.00875 0.90725 0.94226 0.91060 0.94778 0.88879 0.87980 0.94536 0.83236 0.81676 0.82622 0.85748 0.91956 0.88813 0.91031 0.88484 0.95344 0.92434 0.88646 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.13 -3.51 6.00 30.59 0.18 -3.33 16 3 C 0.11 3.68 4.94 86.38 0.43 4.10 16 4 N -0.60 -21.74 2.40 -801.54 -1.92 -23.66 16 5 C 0.56 27.21 6.81 86.70 0.59 27.80 16 6 O -0.59 -34.96 16.41 -1.96 -0.03 -34.99 16 7 C -0.23 -10.38 4.84 -19.99 -0.10 -10.48 16 8 C -0.04 -1.27 7.40 22.52 0.17 -1.10 16 9 C -0.19 -5.19 10.02 22.25 0.22 -4.97 16 10 C -0.05 -1.45 10.03 22.30 0.22 -1.22 16 11 C -0.25 -10.67 9.16 22.36 0.20 -10.46 16 12 C 0.14 7.49 6.65 22.91 0.15 7.64 16 13 O -0.22 -13.83 8.98 -18.08 -0.16 -13.99 16 14 C -0.42 -25.53 9.49 67.93 0.64 -24.89 16 15 H 0.11 5.80 5.21 -2.91 -0.02 5.79 16 16 C -0.02 -1.41 5.49 84.85 0.47 -0.95 16 17 N -0.92 -59.91 13.67 21.62 0.30 -59.62 16 18 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 22 C 0.11 2.91 2.51 44.99 0.11 3.02 16 23 C -0.16 -3.72 9.06 71.98 0.65 -3.07 16 24 C -0.16 -2.68 8.25 71.98 0.59 -2.09 16 25 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.09 1.94 5.42 -2.39 -0.01 1.92 16 30 H 0.10 2.65 6.15 -2.39 -0.01 2.64 16 31 H 0.04 1.52 7.48 -2.39 -0.02 1.50 16 32 H 0.15 3.80 6.36 -2.91 -0.02 3.78 16 33 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 36 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 37 H 0.09 2.67 4.63 -2.39 -0.01 2.66 16 38 H 0.07 1.45 6.51 -2.39 -0.02 1.43 16 39 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 1.02 7.25 -2.39 -0.02 1.00 16 42 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.07 1.12 5.99 -2.39 -0.01 1.11 16 Total: -1.00 -87.22 344.97 6.48 -80.75 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 1.01 Total: 27.59 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 5.26 Total: -22.37 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.63 Total: -83.27 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -0.19 Total: -48.99 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -87.22 6.48 -80.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847174209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.777 kcal (2) G-P(sol) polarization free energy of solvation -87.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds